Gene

KWMTBOMO04675  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005288

Annotation

PREDICTED:_FACT_complex_subunit_Ssrp1_[Amyelois_transitella]

Location

Bomo_Chr8(-):11938721-11950218      View in EpiBrowser

Full name

FACT complex subunit SSRP1      

Transcription factor

HMG

Location in the cell

Nuclear   Reliability : 3.903

CDS

ATGGTACCAGGGAGGTTAAAAATGACAGACCAAAACATAATTTTCAAGAATAGTAAAACCGGCAAAGTTGAACAAATATCAGCTAATGACATTGAGCTGGTGAATTTCCAGAAGTTCATTGGTTCGTGGGGCTTACGTTTGTTTCTCAAAAATGGTACTTTGCACAGATACGGAGGTTTTAAAGAAGGTGAGCAAGAGAAGGTTGCAAAATTCTTCAAAGCCAATTATAATAAAGACATGCTAGAGAAAGAGTTATCTCTAAAAGGTTGGAACTGGGGTACAGCTAAATTTAATGGAGCAGTACTAAGTTTCAATGTTGGTACAAACACCGCTTTTGAAATACCATTGCATTATGTCTCTCAATGCAATACAGGAAAGAATGAAGTCACACTCGAATTTCATCAGAATGATGACACACCTGTATCATTGATGGAAATGCGCTTCCACATTCCCACCAGTGAAGTGGCCAATGATTTGGATGCAGTTGAAGCATTCCACCAACAAGTAATGAACAAAGCGAGTGTTATTTCAGTTTCTGGTGATGCTATTGCTATATTCAGAGAACTACAATGTTTGACACCTCGTGGTCGTTATGATATCAAGGTATTCCAGACATTCTTTCAGCTTCACGGTAAAACCTTTGACTACAAGATCCCTATGTCGACAGTTCTCCGTTTATTCTTATTGCCTCACAAGGATACGAGGCAAATGTTCTTTGTCGTTTCCTTGGATCCACCGATCAAACAGGGTCAAACAAGGTACCATTATTTAGTGCTGTTGTTTGGTATTGAGGAGGAGACAACTGTAGAACTTCCTTTTACAGAGGAAGAATTGAAAGACAAATATGAAGGTAAAATAACAAAGGAATTATCTGGACCGACATACGAAGTTCTAGCCAAAATCATGAAGGTCATCATCAATAGAAGGGTAACAGGTCCTGGTGACTTTTTAGGACACCACAAGACCCCGGCCATAGCGTGTTCATACAAGGCGGCGGCAGGCTATCTGTATCCCCTAGACAAAGGTTTCATATACGTTCACAAGCCACCAGTACACATACGATTTGAGGAGATTGCGTCTGTGAACTTCGCTCGAGGGGGCGCTTCGTCGACGAAATCATTTGATTTCGAAATAGAATTGAAGTTGGGCAGCGTGCACACGTTTAGCAGTATCGAGAAGGGAGAATATGACAAACTATTCAATTATATATCTTCGAAGAAATTACATGTCAAGAATACTGGAAAGAATGACAAAGCCCTGTACGACGATGACTTCGGCGACTCGGACACGGAGAAGGAACCGGACGCGTATCTGGAGCGCGTGAAGGCGGAGGCGAAGGAGCGCGAGTCGGACGACAGCGACGGCTCCGACGAGAGCACCGACGAGGACTTCAACCCCGACAAGGCCAAGGAGAGCGACGTCGCTGAAGAATACGACACGAACGCCTCATCTTCAGAGGACTCCGACGCGTCAGGCGGCTCCGGCTCCGGTGATAGCAAGAAGGAGAAAGAAAAAGAAAAGAAGAAAGAGAAAAAACCTAAGAAAGCTAAGACTATTTCCGAAGCGCCACGTAAGCGTAAAGAGAAGTCTAAGAAACGCGAGAAGGACGTGAACGCGCCAAAGCGGCCGGCGACCGCCTTCATGCTGTGGCTCAACGAAAACAGAAAGAAAATCATTGAAGAGAACCCCGGGATCAAGGTCACAGAGGTCGCCAAGCGCGCGGGAGAACTCTGGAGGGACCTGAAAGACAAATCGGAATGGGAAGAGAAAGCCAACAAAGCGAAAGAAGAATACAATGCCGCAATGAAGAAGTATAAAGACAGCGGCGCGGCCGACGAGTTCAAACAGAAAAAGAAACAGGCTGAAAAAGAACGAAAGACAGCAGAGAAGAAGACCAAAGCTCCTCCAGCAAAGAAGACTCCTGCCGCCGTTCCCACCGGGAAGTTCACCAGCAAAGAGTTTATAGAAGACGACGATAGCTCCTCCGACTCCGACAGCAATAAGAAGAAGGAGAAGAAGGACACTAAAGACACAAAGAAAGATAAAGAAAAATCTAAGAGTTCGTCTTCCGAAGCCGAGGCATCATCGGCGTCTGGAAACGACAGCGGCAGTGATAGTAATTAA

Protein

MVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTSEVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRGRYDIKVFQTFFQLHGKTFDYKIPMSTVLRLFLLPHKDTRQMFFVVSLDPPIKQGQTRYHYLVLLFGIEEETTVELPFTEEELKDKYEGKITKELSGPTYEVLAKIMKVIINRRVTGPGDFLGHHKTPAIACSYKAAAGYLYPLDKGFIYVHKPPVHIRFEEIASVNFARGGASSTKSFDFEIELKLGSVHTFSSIEKGEYDKLFNYISSKKLHVKNTGKNDKALYDDDFGDSDTEKEPDAYLERVKAEAKERESDDSDGSDESTDEDFNPDKAKESDVAEEYDTNASSSEDSDASGGSGSGDSKKEKEKEKKKEKKPKKAKTISEAPRKRKEKSKKREKDVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKANKAKEEYNAAMKKYKDSGAADEFKQKKKQAEKERKTAEKKTKAPPAKKTPAAVPTGKFTSKEFIEDDDSSSDSDSNKKKEKKDTKDTKKDKEKSKSSSSEAEASSASGNDSGSDSN

Description

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Similarity

Belongs to the SSRP1 family.

Uniprot

H9J6Z6   A0A2H1VJZ7   A0A2A4J926   A0A194QSY9   A0A194PQS3   A0A1E1W699   + More
A0A212ENB7   S4PXG7   E2AEI3   F4WJ99   A0A0J7L690   A0A067R232   A0A026W7R0   A0A158NEB6   D6X1B7   A0A0T6B816   A0A088ASB6   A0A2Z5U5X6   A0A2P8XHV6   A0A1Y1L9T7   E2BLQ9   A0A2A3ERW1   A0A310SQT6   A0A1L8DGV0   A0A232F9X2   K7J3D9   A0A0C9R8P1   A0A1B6EEE8   N6US47   A0A1W4X9F1   A0A1B6I9E0   A0A1B6FK22   A0A1B6G5T8   A0A0A9X2W4   Q0IEB2   A0A034WBT1   W8BD77   A0A0V0G502   A0A224X7K1   A0A0K8UFD2   A0A2S2P9X7   A0A1I8PFQ6   A0A2H8TUF8   A0A069DZJ5   R4FNX0   A0A151WSH0   A0A1B0G7P8   B3NPS4   B4PA67   A0A1I8MR81   T1PQ22   E0VDU0   A0A1S3DIE7   A0A1D2MYP6   A0A0P5IFZ6  

Pubmed

19121390    26354079    22118469    23622113    20798317    21719571    + More
24845553    24508170    30249741    21347285    18362917    19820115    26760975    29403074    28004739    28648823    20075255    23537049    25401762    17510324    25348373    24495485    26334808    17994087    17550304    25315136    20566863    27289101   

EMBL

BABH01014064    ODYU01002808    SOQ40762.1    NWSH01002536    PCG68034.1    KQ461154    + More
KPJ08587.1    KQ459595    KPI95662.1    GDQN01008585    JAT82469.1    AGBW02013681    OWR42984.1    GAIX01005068    JAA87492.1    GL438862    EFN68140.1    GL888182    EGI65677.1    LBMM01000514    KMQ98166.1    KK853076    KDR11732.1    KK107356    QOIP01000010    EZA52038.1    RLU17467.1    ADTU01013241    ADTU01013242    KQ971372    EFA10605.2    LJIG01009371    KRT83213.1    FX985766    BBA93653.1    PYGN01002085    PSN31544.1    GEZM01066473    JAV67857.1    GL449036    EFN83393.1    KZ288191    PBC34430.1    KQ761155    OAD58135.1    GFDF01008489    JAV05595.1    NNAY01000645    OXU27223.1    GBYB01004505    GBYB01004508    GBYB01011733    JAG74272.1    JAG74275.1    JAG81500.1    GEDC01001005    JAS36293.1    APGK01018910    KB740085    ENN81542.1    GECU01024174    JAS83532.1    GECZ01019239    JAS50530.1    GECZ01011971    JAS57798.1    GBHO01029265    GBRD01005968    JAG14339.1    JAG59853.1    CH477764    EAT36499.1    GAKP01007190    JAC51762.1    GAMC01009923    JAB96632.1    GECL01003009    JAP03115.1    GFTR01008029    JAW08397.1    GDHF01026932    JAI25382.1    GGMR01013616    MBY26235.1    GFXV01006108    MBW17913.1    GBGD01000530    JAC88359.1    ACPB03000491    GAHY01000398    JAA77112.1    KQ982769    KYQ50820.1    CCAG010016890    CH954179    EDV56865.1    CM000158    EDW92393.1    KA650208    AFP64837.1    DS235088    EEB11546.1    LJIJ01000385    ODM98071.1    GDIQ01215237    JAK36488.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000000311    + More
UP000007755    UP000036403    UP000027135    UP000053097    UP000279307    UP000005205    UP000007266    UP000005203    UP000245037    UP000008237    UP000242457    UP000215335    UP000002358    UP000019118    UP000192223    UP000008820    UP000095300    UP000015103    UP000075809    UP000092444    UP000008711    UP000002282    UP000095301    UP000009046    UP000079169    UP000094527   

PRIDE

H9J6Z6   

Pfam

PF08512   Rtt106        + More
PF03531   SSrecog
PF17292   POB3_N
PF00505   HMG_box
PF14542   Acetyltransf_CG

Interpro

IPR011993   PH-like_dom_sf        + More
IPR038167   SSRP1_sf       
IPR035417   POB3_N       
IPR009071   HMG_box_dom       
IPR013719   DUF1747       
IPR036910   HMG_box_dom_sf       
IPR000969   SSrcognition       
IPR024954   SSRP1_dom       
IPR016181   Acyl_CoA_acyltransferase       
IPR031165   GNAT_YJDJ       

SUPFAM

SSF47095   SSF47095        + More
SSF55729   SSF55729       

Gene 3D

1.10.30.10     2.30.29.220     2.30.29.30    

ProteinModelPortal

H9J6Z6   A0A2H1VJZ7   A0A2A4J926   A0A194QSY9   A0A194PQS3   A0A1E1W699   + More
A0A212ENB7   S4PXG7   E2AEI3   F4WJ99   A0A0J7L690   A0A067R232   A0A026W7R0   A0A158NEB6   D6X1B7   A0A0T6B816   A0A088ASB6   A0A2Z5U5X6   A0A2P8XHV6   A0A1Y1L9T7   E2BLQ9   A0A2A3ERW1   A0A310SQT6   A0A1L8DGV0   A0A232F9X2   K7J3D9   A0A0C9R8P1   A0A1B6EEE8   N6US47   A0A1W4X9F1   A0A1B6I9E0   A0A1B6FK22   A0A1B6G5T8   A0A0A9X2W4   Q0IEB2   A0A034WBT1   W8BD77   A0A0V0G502   A0A224X7K1   A0A0K8UFD2   A0A2S2P9X7   A0A1I8PFQ6   A0A2H8TUF8   A0A069DZJ5   R4FNX0   A0A151WSH0   A0A1B0G7P8   B3NPS4   B4PA67   A0A1I8MR81   T1PQ22   E0VDU0   A0A1S3DIE7   A0A1D2MYP6   A0A0P5IFZ6  

PDB

5UMS     E-value=1.30676e-99,     Score=930

KEGG

NA   

GO

GO:0005694   GO:0006281   GO:0005634   GO:0006260   GO:0003677   GO:0035101   GO:0031491   GO:0000790   GO:0042393   GO:0030838   GO:0005705   GO:0046982   GO:0030707   GO:0043621   GO:0005703   GO:0001672   GO:0031492   GO:0001933   GO:0005730   GO:0070087   GO:0005829   GO:0051101   GO:0030131   GO:0005622   GO:0009058   GO:0005089   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

Subcellular location

Nucleus  
Chromosome  

Length:

707

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0119

Exp number, first 60 AAs:

0.00084

Total prob of N-in:

0.00073

outside

1  -  707

 

 

Pi

188.993158

Theta

180.359091

Tajima's D

0.138936

CLR

0.514907

CSRT

0.404029798510074

Interpretation

Uncertain