Gene

KWMTBOMO04672

Pre Gene Modal

BGIBMGA005520

Annotation

PREDICTED:_ADP-ribosylation_factor-binding_protein_GGA1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr8(+):11920019-11924870      View in EpiBrowser

Location in the cell

Golgi   Reliability : 1.396 Nuclear   Reliability : 1.97

CDS

ATGAATATTACACAAACAAGCTTAGAAGCACTTATTTTAAAAGCTACTCACGAATCATTACCGGCTCCCGATGCAGCGGCTGTAGAAGCATTCTGCACGATTATGCGAGACTCTGCCGAAGGTCCCCAACTGGCAGCGCAAGCTCTGGCCACACGTATCCACAGTCCGAAGGCCCGTGAAGCGCTACTTGCATTGATGATGTTAGATCGCTGTATGCGGCGATGCGACACGCCTTTCCATGCGGAAATCGGAAAATTTCGCTTTCTTAATGAAATGATAAAATTAGTGTCACCAAAATATTATGCAGATCGTACAGCGCCAGAAGTAAAGACAAGGGTTTTGCAGTTGTTCCATGCATGGTCTATAGAATATCATAAGGAGTTTAAATTCAAAGTAGCATATGAGATGTTAAAAAATCAAGGTGTGATAAGAGAGACACCTCCTCCTTTACCGCCAGATGATACACCTCCAGTACATAATCGAGCAAAAAGTACTATATTTGAAGATGAAGAGAAATCTAAACTGTTACAAAAATTATTACAAAGTAAAAAATCAGAAGATTTACAACATGCCAATAGACTTATAAAAACTATGGTTAGAGAGGTAGAACGTCAGAATGAGGCAAACAGCAGACGCGCACAAGAAGTTAGTGCGGCTCTAGATAGTGCCGGGCTATTACGTGACATGCTACTGGCAGCCAGTGATGCTTCATCGGACGAGGAGCAACTGATCCACGAGCTACACTCAACTTGCATTAGACTTAGGCCCATTCTGCAGCAACTGGCTGACAATGACACACAAGCAGAATATCTTAGTGATATTTTACATGCCAGTGATGTGATAGATGAAGTCTGCGAGAGGTACAATGTTTTCTTAATTCAGAAAAAAGCAAATGAACAAATGACAGAACAGGCATCGTTGAGCGGTGAAAGCTTACTTGATTTTGCTGGAGCAAGTACTACTTACATTCGAAAGAATGTGGCCCCGAAGAAAGATGAAAAGCCAGCAAATGTTATTGATGAACTAGGCGATATATTCGCTGCTAGCAGTGAAAGCACTAATAATATTGCTGAACCATTAAAGCCTGTTGCATTGATGCCCACTGCAGATGATGTCGACTTGTTGGGAGACAGATCTAATAAACATGAAGGTTGGAACGAATTGGATTCCCTTGGAGAAGAACTATTAAAACAATCTCTACCAGAGAATGCTAAACGGATTGAAAACTTTAATAGTAAAACATCAACAAAGGTACCAATGAACGCATTGGCCTCACCAAAACATGATGTGAATTTACAGAACAACGGCGCATTACTAGATTTAGATTTCTTCACCAAGAAACCTCAGGAATGTAAACCTGTAACTGCGTCAACTTCTAAAGATGTGACACCCAGCGATGACATCATGGTGGATATTAGCACAGACGTTACTGATGCAACTCTCGTTTTGAACAACAATACTGAGTGTAATTTAAATAATATATTGGATTTCGGATTAGACAATGCCAAAAGTGAAACAGTAATTGATAAGGAAACTAGTGTTATTGAAAAGAAAGAAGTAAATCATAAGAATAACGAAGTGAAACCGTTGACTGATATAAATGTTACGTTGCAAAACGTAAGACCCAGTAAATTACAGCCGCTTACAGTGTTTGAAGAGGAAGAAGGTGTGACAGTTGTTTTACATTTCTGCCAAGATAAACCGAGGCAAGATGTTAATGTTTTAGTCATATCGACTACAAGTAAGAATAAATTGCCCATCGAAGATTATAAATTCCAAAGTGTAGTTCCTAAAGGTTGTAAAGTTCGGCTACTGACACCGTCGGGGACGTCACTGCCGGCGTACAATCCGTTCCTGCCGCCGCCAGCCCTGACGCAGGTCATGCTGCTCGCGAGGCCGCCTTCTATGAATAACATCAGCCTGAAATTCGTTATCACGTACACGTGCGACGAGGAGGTGTATTCAGAAATTGGCGAAGTCAAAGAACTGCCTCTAGAGAAAATCTAA

Protein

MNITQTSLEALILKATHESLPAPDAAAVEAFCTIMRDSAEGPQLAAQALATRIHSPKAREALLALMMLDRCMRRCDTPFHAEIGKFRFLNEMIKLVSPKYYADRTAPEVKTRVLQLFHAWSIEYHKEFKFKVAYEMLKNQGVIRETPPPLPPDDTPPVHNRAKSTIFEDEEKSKLLQKLLQSKKSEDLQHANRLIKTMVREVERQNEANSRRAQEVSAALDSAGLLRDMLLAASDASSDEEQLIHELHSTCIRLRPILQQLADNDTQAEYLSDILHASDVIDEVCERYNVFLIQKKANEQMTEQASLSGESLLDFAGASTTYIRKNVAPKKDEKPANVIDELGDIFAASSESTNNIAEPLKPVALMPTADDVDLLGDRSNKHEGWNELDSLGEELLKQSLPENAKRIENFNSKTSTKVPMNALASPKHDVNLQNNGALLDLDFFTKKPQECKPVTASTSKDVTPSDDIMVDISTDVTDATLVLNNNTECNLNNILDFGLDNAKSETVIDKETSVIEKKEVNHKNNEVKPLTDINVTLQNVRPSKLQPLTVFEEEEGVTVVLHFCQDKPRQDVNVLVISTTSKNKLPIEDYKFQSVVPKGCKVRLLTPSGTSLPAYNPFLPPPALTQVMLLARPPSMNNISLKFVITYTCDEEVYSEIGEVKELPLEKI

Uniprot

H9J7M8   A0A212ENF3   A0A2A4J111   A0A2H1VL39   A0A194PSC6   A0A2A4IYV8   + More
A0A2A4IZB5   A0A194QTE7   A0A1Y1L6Y5   A0A1Y1LBZ0   D6X0M6   A0A154P5A2   A0A0N0BJA1   E2BSS0   A0A224XL36   E0VCT8   U4U3C3   N6TMG5   A0A0T6BHI0   A0A146LR51   U4UEP3   N6TQ37   A0A1L8GNW8   A0A3Q2E3E2   A0A147A1Q6   A0A3Q3LGL8   Q28E38   A0A3Q3RX55   A0A3Q3LEB0   A0A3B5AQU4   A0A3Q1G8A3   A0A146MX01   A0A1A7YL76   A0A1A7WE35   A0A1A8M111   A0A1A8QXV8   A0A1A8LE52   A0A3Q0RL69   A0A1A8KDP0   A0A1A8GV29   A0A1A8FFW3   A0A1A8ADZ3   A0A2I4CYZ6   A0A2U3ZR41   A0A2U3YBB0   A0A3S2P8F2   A0A3Q1JLN3   A0A3B5BAQ4   A0A3Q1HUM1  

Pubmed

19121390    22118469    26354079    28004739    18362917    19820115    + More
20798317    20566863    23537049    26823975    27762356   

EMBL

BABH01014061    BABH01014062    AGBW02013681    OWR42981.1    NWSH01003929    PCG65671.1    + More
ODYU01003149    SOQ41535.1    KQ459595    KPI95659.1    NWSH01005084    PCG64454.1    PCG64453.1    KQ461154    KPJ08584.1    GEZM01062874    JAV69443.1    GEZM01062873    JAV69445.1    KQ971371    EFA10119.2    KQ434809    KZC06358.1    KQ435719    KOX78812.1    GL450241    EFN81316.1    GFTR01007687    JAW08739.1    DS235065    EEB11194.1    KB632056    ERL88369.1    APGK01059126    APGK01059127    APGK01059128    KB741292    ENN70430.1    LJIG01000238    KRT86702.1    GDHC01009462    JAQ09167.1    ERL88370.1    ENN70431.1    CM004472    OCT85547.1    GCES01060167    GCES01014241    JAR72082.1    CR848466    CAJ82212.1    GCES01162139    JAQ24183.1    HADX01008443    SBP30675.1    HADW01002394    SBP03794.1    HAEF01010478    SBR50458.1    HAEG01014725    SBR98352.1    HAEF01005495    SBR42877.1    HAEE01010368    SBR30418.1    HAEC01007608    SBQ75746.1    HAEB01011768    SBQ58295.1    HADY01013960    SBP52445.1    CM012444    RVE69152.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000007266    + More
UP000076502    UP000053105    UP000008237    UP000009046    UP000030742    UP000019118    UP000186698    UP000265020    UP000261640    UP000261400    UP000257200    UP000261340    UP000192220    UP000245340    UP000245341    UP000265040   

PRIDE

H9J7M8   

Pfam

PF03127   GAT        + More
PF02883   Alpha_adaptinC2
PF00790   VHS
PF18308   GGA_N-GAT
PF13405   EF-hand_6
PF13499   EF-hand_7

Interpro

IPR008152   Clathrin_a/b/g-adaptin_app_Ig        + More
IPR038425   GAT_sf       
IPR041198   GGA_N-GAT       
IPR013041   Clathrin_app_Ig-like_sf       
IPR004152   GAT_dom       
IPR002014   VHS_dom       
IPR008942   ENTH_VHS       
IPR008153   GAE_dom       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF48464   SSF48464        + More
SSF49348   SSF49348       
SSF47473   SSF47473       

Gene 3D

1.20.58.160     1.25.40.90    

CDD

cd00051  EFh

ProteinModelPortal

H9J7M8   A0A212ENF3   A0A2A4J111   A0A2H1VL39   A0A194PSC6   A0A2A4IYV8   + More
A0A2A4IZB5   A0A194QTE7   A0A1Y1L6Y5   A0A1Y1LBZ0   D6X0M6   A0A154P5A2   A0A0N0BJA1   E2BSS0   A0A224XL36   E0VCT8   U4U3C3   N6TMG5   A0A0T6BHI0   A0A146LR51   U4UEP3   N6TQ37   A0A1L8GNW8   A0A3Q2E3E2   A0A147A1Q6   A0A3Q3LGL8   Q28E38   A0A3Q3RX55   A0A3Q3LEB0   A0A3B5AQU4   A0A3Q1G8A3   A0A146MX01   A0A1A7YL76   A0A1A7WE35   A0A1A8M111   A0A1A8QXV8   A0A1A8LE52   A0A3Q0RL69   A0A1A8KDP0   A0A1A8GV29   A0A1A8FFW3   A0A1A8ADZ3   A0A2I4CYZ6   A0A2U3ZR41   A0A2U3YBB0   A0A3S2P8F2   A0A3Q1JLN3   A0A3B5BAQ4   A0A3Q1HUM1  

PDB

1LF8     E-value=7.42583e-30,     Score=328

KEGG

101738631    K12404 ADP-ribosylation factor-binding protein GGA | (RefSeq) ADP-ribosylation factor-binding protei

PATHWAY

04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0016192   GO:0005623   GO:0006886   GO:0005509   GO:0030131   GO:0005622   GO:0009058   GO:0005089   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

Length:

668

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00258

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00040

outside

1  -  668

 

 

Pi

202.710998

Theta

189.469863

Tajima's D

-0.483378

CLR

0.285478

CSRT

0.244287785610719

Interpretation

Possibly Positive selection