Gene

KWMTBOMO04652  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005511

Annotation

cytochrome_c_oxidase_subunit_6A1?_mitochondrial-like_[Bombyx_mori]

Location

Bomo_Chr8(+):11486801-11489046      View in EpiBrowser

Full name

Cytochrome c oxidase subunit 6A, mitochondrial      

Alternative Name

Cytochrome c oxidase polypeptide VIa

Location in the cell

Mitochondrial   Reliability : 3.307

CDS

ATGACTTCGATTCTGCGAAGAGCTGCTATTTCTTTCTTAAAAACAAATGCGCGTGCTTCTTCGCATGCTGCTACTGCTGGTGGGCATGGAGGTGGCTACATATTATGGAAAAGGATGTCCTTCTTCGTTGCATTCCCAGCTATTGCTCTCGGAATGCTAAATGCCTACTTAGCTCACCAAGAGGAACACCATGAACGTCCGCCATTTGTACCTTATGAATACATGCGCATTCGTACAAAGCGTTTCCCATGGGGTGATGGACAGAAGTCCCTTTTCCACAACCCTCATGTGAATGCCCTTCCCAGCGGTTATGAAGATGACCACTAA

Protein

MTSILRRAAISFLKTNARASSHAATAGGHGGGYILWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHNPHVNALPSGYEDDH

Similarity

Belongs to the cytochrome c oxidase subunit 6A family.

Uniprot

A9XIJ9   A0A076FFU3   A0A194QSS3   A0A194PQB4   A0A212FL96   A0A0K8TK37   + More
A0A3S2TNI6   A0A2A4J501   A0A2H1V0U9   A0A2S3SGH9   D6WXC3   A0A0K8TP64   A0A1J1IK85   A0A084WFD8   A0A1W4WEY1   Q7Q4V9   A0A182KBP8   A0A182WZ81   A0A182TW60   A0A182HMQ0   A0A1Q3FV63   A0A182R240   A0A182SCE5   A0A1Y1JWU0   A0A182XYC5   A0A182N131   A0A182MR24   A0A182UNB8   A0A182PUB5   T1E9Q9   A0A0P5ASL8   W5JT15   A0A0P4WX50   A0A2M4A7Z5   A0A0P5GUG1   A0A2M3YZP7   A0A0P5DJK6   A0A2M4C462   A0A2M4C3F5   A0A0P4WT14   W8C3X6   A0A2M4AF88   E9GDM0   A0A0P5BHP3   A0A0P5XMK0   A0A1L8E006   A0A023EF26   A0A182GD61   T1I7I4   A0A0P4VI22   A0A182NP46   A0A0N8BQC7   A0A182VVH1   A0A1B0CWT8   A0A0P5MPS0  

Pubmed

26354079    22118469    29358930    18362917    19820115    26369729    + More
24438588    12364791    14747013    17210077    28004739    25244985    20920257    23761445    24495485    21292972    24945155    26483478    27129103   

EMBL

EF434171    ABQ43785.1    KF803649    AII16890.1    KQ461154    KPJ08563.1    + More
KQ459595    KPI95636.1    AGBW02007817    OWR54511.1    GBRD01000046    JAG65775.1    RSAL01000041    RVE50890.1    NWSH01003215    PCG66758.1    ODYU01000166    SOQ34475.1    PDGJ01000160    POC56833.1    KQ971361    EFA09254.1    GDAI01001431    JAI16172.1    CVRI01000054    CRL00170.1    ATLV01023334    KE525342    KFB48932.1    AAAB01008963    EAA12143.4    APCN01004856    GFDL01003617    JAV31428.1    GEZM01102587    JAV51855.1    AXCM01003937    GAMD01001112    JAB00479.1    GDIP01209002    JAJ14400.1    ADMH02000457    ETN66413.1    GDIP01253746    JAI69655.1    GGFK01003531    MBW36852.1    GDIQ01236310    LRGB01000687    JAK15415.1    KZS16675.1    GGFM01000982    MBW21733.1    GDIP01155335    JAJ68067.1    GGFJ01010647    MBW59788.1    GGFJ01010648    MBW59789.1    GDIP01253550    JAI69851.1    GAMC01009921    JAB96634.1    GGFK01006086    MBW39407.1    GL732540    EFX82455.1    GDIP01184356    JAJ39046.1    GDIP01071522    JAM32193.1    GFDF01002105    JAV11979.1    GAPW01006213    JAC07385.1    JXUM01055231    KQ561857    KXJ77308.1    ACPB03005591    GDKW01003175    JAI53420.1    GDIQ01155243    JAK96482.1    AJWK01032855    GDIQ01155242    JAK96483.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000283053    UP000218220    UP000237283    + More
UP000007266    UP000183832    UP000030765    UP000192223    UP000007062    UP000075881    UP000076407    UP000075902    UP000075840    UP000075900    UP000075901    UP000076408    UP000075884    UP000075883    UP000075903    UP000075885    UP000000673    UP000076858    UP000000305    UP000069940    UP000249989    UP000015103    UP000075920    UP000092461   

PRIDE

A9XIJ9   

Pfam

PF02046   COX6A        + More
PF11976   Rad60-SLD

Interpro

IPR001349   Cyt_c_oxidase_su6a        + More
IPR018507   Cyt_c_oxidase_su6a_CS       
IPR036418   Cyt_c_oxidase_su6a_sf       
IPR029055   Ntn_hydrolases_N       
IPR000101   GGT_peptidase       
IPR022617   Rad60/SUMO-like_dom       
IPR029071   Ubiquitin-like_domsf       

SUPFAM

SSF81411   SSF81411        + More
SSF54236   SSF54236       
SSF56235   SSF56235       

Gene 3D

4.10.95.10    

CDD

cd00925  Cyt_c_Oxidase_VIa

ProteinModelPortal

A9XIJ9   A0A076FFU3   A0A194QSS3   A0A194PQB4   A0A212FL96   A0A0K8TK37   + More
A0A3S2TNI6   A0A2A4J501   A0A2H1V0U9   A0A2S3SGH9   D6WXC3   A0A0K8TP64   A0A1J1IK85   A0A084WFD8   A0A1W4WEY1   Q7Q4V9   A0A182KBP8   A0A182WZ81   A0A182TW60   A0A182HMQ0   A0A1Q3FV63   A0A182R240   A0A182SCE5   A0A1Y1JWU0   A0A182XYC5   A0A182N131   A0A182MR24   A0A182UNB8   A0A182PUB5   T1E9Q9   A0A0P5ASL8   W5JT15   A0A0P4WX50   A0A2M4A7Z5   A0A0P5GUG1   A0A2M3YZP7   A0A0P5DJK6   A0A2M4C462   A0A2M4C3F5   A0A0P4WT14   W8C3X6   A0A2M4AF88   E9GDM0   A0A0P5BHP3   A0A0P5XMK0   A0A1L8E006   A0A023EF26   A0A182GD61   T1I7I4   A0A0P4VI22   A0A182NP46   A0A0N8BQC7   A0A182VVH1   A0A1B0CWT8   A0A0P5MPS0  

PDB

5Z62     E-value=6.27076e-21,     Score=241

KEGG

101738548    K02266 cytochrome c oxidase subunit 6a | (RefSeq) cytochrome c oxidase subunit 6A1, mitochondrial-li

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0005751   GO:0004129   GO:0016021   GO:0006123   GO:0030234   GO:0009060   GO:0006751   GO:0036374   GO:0005743   GO:0006914   GO:0009058   GO:0005089   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

PANTHER

PTHR11504   PTHR11686  

Subcellular location

Mitochondrion inner membrane  

Length:

108

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

16.7371

Exp number, first 60 AAs:

16.71034

Total prob of N-in:

0.78052

POSSIBLE N-term signal

sequence

outside

1  -  108

 

 

Pi

205.440517

Theta

172.708138

Tajima's D

0.531048

CLR

0

CSRT

0.51842407879606

Interpretation

Uncertain