SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04647
Annotation
G_protein-coupled_receptor_[Danaus_plexippus]
Location in the cell
PlasmaMembrane   Reliability : 4.021
 

Sequence

CDS
ATGATTTCCTTAAATCTCACAGATTTCAAAAGTGAACTGCTGTATTTCTACCCTTCAGTACTTACCTTAGTTGTTGTAAACGTAATTCTTTTCTCCGTGACGGCGTATCGTATTAGATCTATCCGACAAGAAACAGCTATTTTAAAGGGATCTGAATCTTCGAGGAGTGATAAATTGAAAAAAGATAAGCAAAGGTATTCTTTATACTTGAAATTGTTTGTCGTTATGGGTGTGAATTGGACAATCGAGGTGATAGGCTTCGCAGTCGGCGGATCTAACTACTACTGGATTCTTATAGACATATCGAATATCGGGCTTGGAATCTTCATATTTTTAATATTCGTTTGGAAAAAGAAAGTCAGAAACCTAATAAGGAAAAGATTTCAACAAATCCGAGGTCAACGTGTTTCTTCTGACGGACCAGGAATAAAGTGGACCACCAGCTCTGCACCCACAGAGGACACACGCGTATCGGGCGACGAATCCCTGATAAGATTAAAGGAATTGCGTTAG
Protein
MISLNLTDFKSELLYFYPSVLTLVVVNVILFSVTAYRIRSIRQETAILKGSESSRSDKLKKDKQRYSLYLKLFVVMGVNWTIEVIGFAVGGSNYYWILIDISNIGLGIFIFLIFVWKKKVRNLIRKRFQQIRGQRVSSDGPGIKWTTSSAPTEDTRVSGDESLIRLKELR

Summary

Similarity
Belongs to the G-protein coupled receptor Fz/Smo family.
EMBL
AGBW02009085    OWR51711.1    GDQN01006455    JAT84599.1    KQ461154    KPJ08557.1    + More
KQ459595    KPI95630.1    GDQN01002620    JAT88434.1    GDQN01004782    JAT86272.1    KK854040    PTY10069.1    KPI95685.1    KPJ08612.1    KK853008    KDR12560.1    GEZM01065042    JAV68579.1    CVRI01000050    CRK99458.1    GFDF01007356    JAV06728.1    GFDF01007357    JAV06727.1    GGFL01000036    MBW64214.1    GGFL01000037    MBW64215.1    GEZM01065041    JAV68580.1    PYGN01000153    PSN52656.1    GGFK01009643    MBW42964.1    DS232324    EDS40048.1    GFDL01006627    JAV28418.1    GEBQ01007873    JAT32104.1    APCN01000032    GECZ01024998    JAS44771.1    ADMH02001746    ETN61224.1    GGFL01015103    MBW79281.1    AAAB01008960    EDO63835.1    KQ972625    KXZ75833.1    ODYU01006156    SOQ47762.1    GEZM01010671    JAV93926.1    GEDC01000202    JAS37096.1    KU363815    ANB32480.1    MH175213    AXC32921.1    MH175214    AXC32922.1    GEZM01007070    JAV95425.1    GEDC01020320    JAS16978.1    DS235289    EEB14456.1    GEDC01018212    GEDC01005937    GEDC01001428    JAS19086.1    JAS31361.1    JAS35870.1    GEZM01010670    JAV93927.1    GEDC01018773    GEDC01009262    GEDC01000043    JAS18525.1    JAS28036.1    JAS37255.1    KQ978023    KYM98041.1    JQ809653    AFW03960.1    RSAL01000041    RVE50936.1    HQ188200    AEM43035.1    GEZM01007068    JAV95430.1    GEZM01007069    JAV95427.1   
Pfam
PF00002   7tm_2        + More
PF06652   Methuselah_N
PF07666   MpPF26
PF05773   RWD
PF01534   Frizzled
Interpro
IPR036272   Methuselah_N_sf        + More
IPR000832   GPCR_2_secretin-like       
IPR017981   GPCR_2-like       
IPR010596   Methuselah_N_dom       
IPR011655   MpPF26       
IPR013083   Znf_RING/FYVE/PHD       
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR001841   Znf_RING       
IPR006575   RWD-domain       
IPR000539   Frizzled/Smoothened_TM       
IPR023311   Methusela_ecto_dom_2       
IPR017452   GPCR_Rhodpsn_7TM       
SUPFAM
SSF63877   SSF63877        + More
SSF54495   SSF54495       
Gene 3D

Ontologies

Topology

Length:
170
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
67.17359
Exp number, first 60 AAs:
21.59334
Total prob of N-in:
0.00018
POSSIBLE N-term signal
sequence
outside
1  -  12
TMhelix
13  -  35
inside
36  -  67
TMhelix
68  -  90
outside
91  -  93
TMhelix
94  -  116
inside
117  -  170
 
 

Population Genetic Test Statistics

Pi
129.850654
Theta
152.014715
Tajima's D
-0.5207
CLR
106.826291
CSRT
0.245887705614719
Interpretation
Uncertain
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