SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04643
Pre Gene Modal
BGIBMGA005303
Annotation
putative_cuticle_protein_CPH43_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.621
 

Sequence

CDS
ATGGGGCTTCTAGCTGCATTAGTGGTAAACGCGGTCGGCGGTGCTGTAATATATGGCACTGGGGGTCTGTTGACTCCATTAGTGGCTCCCGTGCTCGGTTTCAGCTCAGCGGGAATAGCGGCAGGAAGCACAGCCGCTGCTGCACAAGCATACTACGGAAATTTAGTGGCCGGCAGCATTGTGTCACAGTTGACTGCTGCTGCCATGGTAGCCCCCACGCCATGA
Protein
MGLLAALVVNAVGGAVIYGTGGLLTPLVAPVLGFSSAGIAAGSTAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP

Summary

Pfam
PF06140   Ifi-6-16
Interpro
IPR009311   IFI6/IFI27-like        + More
IPR038213   IFI6/IFI27-like_sf       
Gene 3D

Ontologies

Topology

Length:
74
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
43.46186
Exp number, first 60 AAs:
37.81623
Total prob of N-in:
0.62186
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  38
TMhelix
39  -  61
inside
62  -  74
 
 

Population Genetic Test Statistics

Pi
68.908357
Theta
183.430748
Tajima's D
-0.260167
CLR
378.52308
CSRT
0.299235038248088
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号