Silkworm Genome Informatics Database

Gene

KWMTBOMO04643

Pre Gene Modal

BGIBMGA005303

Annotation

putative_cuticle_protein_CPH43_[Bombyx_mori]

Location

Bomo_Chr8(+):11317831-11322557 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 1.621

CDS

ATGGGGCTTCTAGCTGCATTAGTGGTAAACGCGGTCGGCGGTGCTGTAATATATGGCACTGGGGGTCTGTTGACTCCATTAGTGGCTCCCGTGCTCGGTTTCAGCTCAGCGGGAATAGCGGCAGGAAGCACAGCCGCTGCTGCACAAGCATACTACGGAAATTTAGTGGCCGGCAGCATTGTGTCACAGTTGACTGCTGCTGCCATGGTAGCCCCCACGCCATGA

Protein

MGLLAALVVNAVGGAVIYGTGGLLTPLVAPVLGFSSAGIAAGSTAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP

Uniprot

D0VEQ4 A7L9U7 A0A2H1VL21 Q5MGF5 S4NSE1 H9JW65 + More
I4DMV7 A0A194QSW7 A0A0L7KHC0 I4DKY7

Pubmed

19121390 16023793 23622113 22651552 26354079 26227816 + More

EMBL

BABH01014007 GU070728 ACY06938.1 BABH01014006 EF687857 EF710774 + More
GU070729 GU181279 ABS12245.1 ABS76464.1 ACY06939.1 ACZ67847.1 ODYU01003137 SOQ41517.1 AY829831 AAV91445.1 GAIX01012576 JAA79984.1 BABH01025342 BABH01025343 AK402625 BAM19247.1 KQ461154 KPJ08613.1 JTDY01009783 KOB62712.1 AK401955 KQ459595 BAM18577.1 KPI95687.1

Proteomes

UP000005204 UP000053240 UP000037510 UP000053268

PRIDE

D0VEQ4

Pfam

PF06140 Ifi-6-16

Interpro

IPR009311 IFI6/IFI27-like + More
IPR038213 IFI6/IFI27-like_sf

Gene 3D

1.10.246.160

ProteinModelPortal

D0VEQ4 A7L9U7 A0A2H1VL21 Q5MGF5 S4NSE1 H9JW65 + More
I4DMV7 A0A194QSW7 A0A0L7KHC0 I4DKY7

KEGG

101737792 no KO assigned | (RefSeq) uncharacterized LOC101737792

GO

GO:0016021

Length:

74

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

43.46186

Exp number, first 60 AAs:

37.81623

Total prob of N-in:

0.62186

POSSIBLE N-term signal

sequence

inside

1 - 6

TMhelix

7 - 29

outside

30 - 38

TMhelix

39 - 61

inside

62 - 74

Pi

68.908357

Theta

183.430748

Tajima's D

-0.260167

CLR

378.52308

CSRT

0.299235038248088

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree