Silkworm Genome Informatics Database

Gene

KWMTBOMO04638

Pre Gene Modal

BGIBMGA012933

Annotation

PREDICTED:_cellular_nucleic_acid-binding_protein-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr8(+):11282021-11283370 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.499 Mitochondrial Reliability : 1.046 Nuclear Reliability : 1.64

CDS

ATGCACAAAATTTTAAATTTATTGCCGGAAAAATTTAATACTTTCAAATCAATTTGGAACAATATAGACGTAGAAAAGAAAAATTTAGACGAATTAACCCGAAGAATTAAAAATGAATTGGAATTCATCAAAGAAGACTCTATCATAGAATCTCGAGAAATTTTAAAAGGAAACGAAAAGAGATGTTTCATCTGCAACAAACCAGGGCACATAGCAAGATTCTGTAAAAATAAAAAATGCGACCTCTGCGGCAAGTCGGGACATAGTACGGATGAGTGCTATAGAAACAAAATATGTACCAGGTGTAGTAAGAAAGGGCATATAAAGCAATTTTGTAGAACATATAATTCGGTTATAGAGGTTGAGAAGGCGTTTAAGGTTATTAAAGAGGTTGAGAAGGCGTTTAAGGTTATTAAAGAGGTTGAGAAGGCGTTTAAGGTTATTAAAGAGGTTGAGAAGGCGTTTAAGGTTATTAAAGAGGTTGAGAAGGCGTTTAAGGTTATTAAAGAGGTTGAGAAGGCGTTAAAAGTTTTAAATAAACTTGAAGAGTTTATGTAG

Protein

MHKILNLLPEKFNTFKSIWNNIDVEKKNLDELTRRIKNELEFIKEDSIIESREILKGNEKRCFICNKPGHIARFCKNKKCDLCGKSGHSTDECYRNKICTRCSKKGHIKQFCRTYNSVIEVEKAFKVIKEVEKAFKVIKEVEKAFKVIKEVEKAFKVIKEVEKAFKVIKEVEKALKVLNKLEEFM

Uniprot

A0A0J7K9W0 A0A2G8KHQ3 A0A2G8L1V2 A0A2G8LFL7 A0A2G8JED1 A0A2G8JCC6 + More
A0A2G8LND0 A0A2G8KRS8 A0A1B6CS98 A0A1B6DCP2 A0A2D0QHP7 A0A2J7R0F1

Pubmed

29023486

EMBL

LBMM01010801 KMQ87218.1 MRZV01000576 PIK47527.1 MRZV01000257 PIK54249.1 + More
MRZV01000094 PIK59046.1 MRZV01002287 PIK34104.1 MRZV01002588 PIK33392.1 MRZV01000025 PIK61761.1 MRZV01000407 PIK50709.1 GEDC01020902 JAS16396.1 GEDC01027393 GEDC01013837 JAS09905.1 JAS23461.1 NEVH01008243 PNF34313.1

Proteomes

UP000036403 UP000230750 UP000221080 UP000235965

Pfam

PF00098   zf-CCHC        + More
PF00665   rve
PF07727   RVT_2
PF13976   gag_pre-integrs

Interpro

IPR001584   Integrase_cat-core        + More
IPR039537   Retrotran_Ty1/copia-like
IPR036875   Znf_CCHC_sf
IPR012337   RNaseH-like_sf
IPR001878   Znf_CCHC
IPR013103   RVT_2
IPR025724   GAG-pre-integrase_dom
IPR036397   RNaseH_sf

SUPFAM

SSF53098 SSF53098 + More
SSF57756 SSF57756

Gene 3D

3.30.420.10

ProteinModelPortal

A0A0J7K9W0 A0A2G8KHQ3 A0A2G8L1V2 A0A2G8LFL7 A0A2G8JED1 A0A2G8JCC6 + More
A0A2G8LND0 A0A2G8KRS8 A0A1B6CS98 A0A1B6DCP2 A0A2D0QHP7 A0A2J7R0F1

PDB

5O2U E-value=0.00166165, Score=94

KEGG

105842432 K09250 cellular nucleic acid-binding protein | (RefSeq) cellular nucleic acid-binding protein-like

GO

GO:0008270 GO:0003676 GO:0000943 GO:0015074 GO:0006508 GO:0031012 GO:0005089 GO:0035023 GO:0005515 GO:0016742 GO:0003824

PANTHER

PTHR11439

Length:

185

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02609

outside

1 - 185

Pi

148.839776

Theta

178.116359

Tajima's D

-0.593021

CLR

0.021289

CSRT

0.222888855557222

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics