Gene

KWMTBOMO04621  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005311

Annotation

PREDICTED:_probable_RNA-binding_protein_19_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr8(-):10766232-10772616      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.764

CDS

ATGTCACGTCTTATTGTTAAAAATTTGCCTAACAAGGTTACAGTCGATCATCTTAGAGAATTGTTTGGTCAGAAAGGAGAGGTTACCGACGTACAGTTGAAATATACCAAAGATGGAAAATTCAGAAACTTCGGTTTCGTTGGTTATAGAACTGAGGAACAAGCGATAGCCGCCAAAGAATACTTTGATGGCACTTGCATACGTTCTATGAAAATTGAAGTTCAAACATGTGTTGATTTAGGAGATGAGAAAAAACCTAGAGCGTGGAGCAAATACGCTTCCGACAGTACAGCCTACAAGAAAATTCACAAAGATGAAATTGACACTGCCAAGGCACAAAAACAAGAAAGGAAAGTGAAAAAAAACAAGAATAAAATCAAAGAACTTTTGCAGAAGCACAAAGATGACCCATTATTTGCTGAATTCATTAATGCACACATCAATGACAAGACTGCATGGATAAAGGAAGCCTTTGAAGATGCTTCAAAATCTGATAATGACAGTGGTGTGGATGAAGAAACTGTTGCTAATGATGCTGAGAAACAGAAGGAAGTAGTGGTAGAAACTGACAATCCAAAAAAGAAGGATGAGAAAGTGGCAAACAAACATATCAGTGATTTAGAGTACATGAAATTATTGATGAAGAAAATCGATAGGAATACAGAAGAACCCCAAACGGAAACAGAGGAAATCAAGCCAAAAAAAGTTAGAAACAGAGAATTGTTCTATGTCAAAATAACAGGACTACCATTTAAATGTAAAAAAAAGGACATCAAGGAATTTTTCAGACCTCTTGTACCATTTTCAATAAGACTGCCACTTGGGAAAGGAAAAAAGCTTGCTGGATTTTGTTATGTTGGCTTCAGGACTGAAAAGGAATTGAAGAAAGCCCTGAACAAAGATAAATTATTTATAGGTAATCATCGTCTTCAAGTACATAAATATGAAAACAGAACAAAATTAGCAGCAGAGGAAGAAGAAAAACAAAACACAAAACGAAAACAAGAGCAAACAAATAACGAAGAAAGTATCGGTGAAAGTGGCAGTATATTCGTAAGGAATCTTCCATATGTGGTGTCCGAGGAAGAAGTTACTCAGCTATTCGAAAAGTATGGTCCCCTGACAGAAGTAAGCATGCCCATAGACCCTATTCTGCGCCAGCCGAAAGGTTTCGCCACCGTGACGTACATGATGCCCGAACACGCTGTAAAGGCCTATATGGAGCTCGACGGAACCGCATTCTGTGGCAGAATGCTACACCTTCTGCCCGCTAAAACTCAACACGTAGACTTGGAAAATGATGACGGTGGGCTGTGA

Protein

MSRLIVKNLPNKVTVDHLRELFGQKGEVTDVQLKYTKDGKFRNFGFVGYRTEEQAIAAKEYFDGTCIRSMKIEVQTCVDLGDEKKPRAWSKYASDSTAYKKIHKDEIDTAKAQKQERKVKKNKNKIKELLQKHKDDPLFAEFINAHINDKTAWIKEAFEDASKSDNDSGVDEETVANDAEKQKEVVVETDNPKKKDEKVANKHISDLEYMKLLMKKIDRNTEEPQTETEEIKPKKVRNRELFYVKITGLPFKCKKKDIKEFFRPLVPFSIRLPLGKGKKLAGFCYVGFRTEKELKKALNKDKLFIGNHRLQVHKYENRTKLAAEEEEKQNTKRKQEQTNNEESIGESGSIFVRNLPYVVSEEEVTQLFEKYGPLTEVSMPIDPILRQPKGFATVTYMMPEHAVKAYMELDGTAFCGRMLHLLPAKTQHVDLENDDGGL

Uniprot

A0A212EYT9   A0A1E1W9U3   A0A194QSP4   A0A1Q3G5K5   A0A2H1V0F5   A0A194PS80   + More
A0A0L7KS24   A0A1B6DA95   A0A310SFN0   A0A0M9AAJ5   A0A026WHA4   A0A0L7QVE2   A0A2J7QFG1   A0A1B6H1H4   A0A154PSE7   A0A1I8MYH3   A0A087ZW87   A0A067RDW7   A0A0T6AWD8   A0A2A3ELB7   A0A0L0BZW2   B4M823   J9JLT0   A0A2S2PGI8   A0A0C9QVR2   A0A1Y1KRJ6   A0A2H8TTY7   B4HCI1   A0A1A9XLQ1   A0A1B0B6D8   A0A0J7P2V9   D6WFN0   E2ACU6   B5DKH5   A0A1A9VUG3   A0A1B0AC25   A0A034VGP5   B4N276   A0A1I8NPN5   A0A0J9RSQ3   B4L6E8   B4HL79   A0A2S2QI99   W8AG79   B3NCJ7   A0A1W4V9V3   A0A195BL35   Q8MYR4   Q9VT19   A0A0K8VFR1   A0A3B0K076   U5EZQ2   A0A158NJ81   E2C8C8   E0VMX2   A0A3B0K241   B4JKK6   B3MYP1   R4WD88   N6TRR6   Q95ZH1   B4PEF0   A0A232F1G7   A0A0A9WW76   K7J2N4   A0A151JNX8   A0A146LM56   A0A131XQ96   A0A0K8R7W1   A0A182GC97   A0A0K8SNM8   A0A0M4ET32   A0A1J1IPY6   A0A0N7Z940   A0A1B0GB28   A0A293M476   A0A3Q0J6R8   A0A023GG92   A0A131XR37   A0A224XJU3   F4WKP3   A0A151I7J3   A0A1S4F6L4   Q17DU7   A0A0V0G4J1   A0A069DX14   A0A023FBD9   A0A336LLS5   A0A1Z5L6D8   A0A1B0FY84   A0A336LQ43   E9FYZ2   E9J1R7   A0A0P5Y5Q7   T1HN71   A0A0P5WRZ5   A0A0P5TJ78   A0A0P5U444   A0A0P5YEG7  

Pubmed

22118469    26354079    26227816    24508170    30249741    25315136    + More
24845553    26108605    17994087    28004739    18362917    19820115    20798317    15632085    25348373    22936249    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    21347285    20566863    23691247    23537049    17550304    28648823    25401762    20075255    26823975    26483478    27129103    21719571    17510324    26334808    25474469    28528879    21292972    21282665   

EMBL

AGBW02011442    OWR46650.1    GDQN01007318    JAT83736.1    KQ461154    KPJ08538.1    + More
GEYN01000171    JAV44818.1    ODYU01000113    SOQ34338.1    KQ459595    KPI95609.1    JTDY01006628    KOB65819.1    GEDC01014684    JAS22614.1    KQ776210    OAD52210.1    KQ435713    KOX79323.1    KK107207    QOIP01000002    EZA55442.1    RLU25578.1    KQ414727    KOC62529.1    NEVH01015298    PNF27320.1    GECZ01001240    JAS68529.1    KQ435127    KZC14845.1    KK852529    KDR21962.1    LJIG01022662    KRT79377.1    KZ288215    PBC32500.1    JRES01001179    KNC24759.1    CH940653    EDW62299.1    ABLF02013592    GGMR01015930    MBY28549.1    GBYB01007824    JAG77591.1    GEZM01078271    JAV62800.1    GFXV01005614    MBW17419.1    CH479335    EDW26944.1    JXJN01009057    LBMM01000257    KMR02737.1    KQ971319    EFA00249.2    GL438582    EFN68744.1    CH379063    EDY72024.1    GAKP01017685    JAC41267.1    CH963925    EDW78465.1    CM002912    KMY98692.1    CH933812    EDW05944.1    CH480815    EDW40898.1    GGMS01008220    MBY77423.1    GAMC01019225    GAMC01019223    GAMC01019221    GAMC01019217    GAMC01019216    JAB87330.1    CH954178    EDV51227.1    KQ976453    KYM85392.1    AY113652    AAM29657.1    AE014296    AAF50237.1    GDHF01014570    JAI37744.1    OUUW01000011    SPP86733.1    GANO01000369    JAB59502.1    ADTU01017554    GL453652    EFN75799.1    DS235327    EEB14728.1    SPP86732.1    CH916370    EDW00109.1    CH902632    EDV32735.1    AK417478    BAN20693.1    APGK01057631    KB741280    KB632170    ENN70996.1    ERL89498.1    AJ314912    CAC42098.1    CM000159    EDW92988.1    NNAY01001352    OXU24267.1    GBHO01030887    JAG12717.1    KQ978858    KYN27928.1    GDHC01010737    JAQ07892.1    GEFM01006567    JAP69229.1    GADI01006667    JAA67141.1    JXUM01053996    KQ561800    KXJ77485.1    GBRD01010918    JAG54906.1    CP012528    ALC48638.1    CVRI01000056    CRL01786.1    GDKW01001611    JAI54984.1    CCAG010006530    GFWV01010377    MAA35106.1    GBBM01003633    JAC31785.1    GEFM01006699    JAP69097.1    GFTR01008147    JAW08279.1    GL888206    EGI65135.1    KQ978411    KYM94101.1    CH477291    EAT44565.1    GECL01003148    JAP02976.1    GBGD01000459    JAC88430.1    GBBI01000388    JAC18324.1    UFQT01000048    SSX19012.1    GFJQ02003994    JAW02976.1    AJVK01000800    SSX19011.1    GL732527    EFX87687.1    GL767674    EFZ13307.1    GDIP01062585    JAM41130.1    ACPB03020358    GDIP01082282    JAM21433.1    GDIP01127081    JAL76633.1    GDIP01135433    JAL68281.1    GDIP01060744    JAM42971.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000037510    UP000053105    UP000053097    + More
UP000279307    UP000053825    UP000235965    UP000076502    UP000095301    UP000005203    UP000027135    UP000242457    UP000037069    UP000008792    UP000007819    UP000008744    UP000092443    UP000092460    UP000036403    UP000007266    UP000000311    UP000001819    UP000078200    UP000092445    UP000007798    UP000095300    UP000009192    UP000001292    UP000008711    UP000192221    UP000078540    UP000000803    UP000268350    UP000005205    UP000008237    UP000009046    UP000001070    UP000007801    UP000019118    UP000030742    UP000002282    UP000215335    UP000002358    UP000078492    UP000069940    UP000249989    UP000092553    UP000183832    UP000092444    UP000079169    UP000007755    UP000078542    UP000008820    UP000092462    UP000000305    UP000015103   

PRIDE

Q8MYR4    Q9VT19   

Pfam

PF00076   RRM_1        + More
PF10601   zf-LITAF-like

Interpro

IPR035979   RBD_domain_sf        + More
IPR034421   RBM19_RRM6       
IPR034423   RBM19_RRM5       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034418   RMB19_RRM1       
IPR034420   RBM19_RRM4       
IPR034419   RBM19_RRM3       
IPR003954   RRM_dom_euk       
IPR006629   LITAF       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12564  RRM1_RBM19
cd12318  RRM5_RBM19_like
cd12571  RRM6_RBM19
cd12569  RRM4_RBM19
cd12567  RRM3_RBM19

ProteinModelPortal

A0A212EYT9   A0A1E1W9U3   A0A194QSP4   A0A1Q3G5K5   A0A2H1V0F5   A0A194PS80   + More
A0A0L7KS24   A0A1B6DA95   A0A310SFN0   A0A0M9AAJ5   A0A026WHA4   A0A0L7QVE2   A0A2J7QFG1   A0A1B6H1H4   A0A154PSE7   A0A1I8MYH3   A0A087ZW87   A0A067RDW7   A0A0T6AWD8   A0A2A3ELB7   A0A0L0BZW2   B4M823   J9JLT0   A0A2S2PGI8   A0A0C9QVR2   A0A1Y1KRJ6   A0A2H8TTY7   B4HCI1   A0A1A9XLQ1   A0A1B0B6D8   A0A0J7P2V9   D6WFN0   E2ACU6   B5DKH5   A0A1A9VUG3   A0A1B0AC25   A0A034VGP5   B4N276   A0A1I8NPN5   A0A0J9RSQ3   B4L6E8   B4HL79   A0A2S2QI99   W8AG79   B3NCJ7   A0A1W4V9V3   A0A195BL35   Q8MYR4   Q9VT19   A0A0K8VFR1   A0A3B0K076   U5EZQ2   A0A158NJ81   E2C8C8   E0VMX2   A0A3B0K241   B4JKK6   B3MYP1   R4WD88   N6TRR6   Q95ZH1   B4PEF0   A0A232F1G7   A0A0A9WW76   K7J2N4   A0A151JNX8   A0A146LM56   A0A131XQ96   A0A0K8R7W1   A0A182GC97   A0A0K8SNM8   A0A0M4ET32   A0A1J1IPY6   A0A0N7Z940   A0A1B0GB28   A0A293M476   A0A3Q0J6R8   A0A023GG92   A0A131XR37   A0A224XJU3   F4WKP3   A0A151I7J3   A0A1S4F6L4   Q17DU7   A0A0V0G4J1   A0A069DX14   A0A023FBD9   A0A336LLS5   A0A1Z5L6D8   A0A1B0FY84   A0A336LQ43   E9FYZ2   E9J1R7   A0A0P5Y5Q7   T1HN71   A0A0P5WRZ5   A0A0P5TJ78   A0A0P5U444   A0A0P5YEG7  

PDB

1WHW     E-value=7.59996e-22,     Score=257

KEGG

101747007    K14787 multiple RNA-binding domain-containing protein 1 | (RefSeq) probable RNA-binding protein 19

GO

GO:0003723   GO:0016740   GO:0003729   GO:0004386   GO:0016021   GO:1990904   GO:0003676   GO:0000166   GO:0008270   GO:0004190   GO:0006508   GO:0005089   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000910000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00281

outside

1  -  438

 

 

Pi

183.509418

Theta

174.542158

Tajima's D

0.763596

CLR

0

CSRT

0.598270086495675

Interpretation

Uncertain