Gene

KWMTBOMO04618

Annotation

PREDICTED:_probable_RNA-binding_protein_19_[Papilio_xuthus]

Location

Bomo_Chr8(-):10750825-10755416      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.809

CDS

ATGAGTGCCGCTGTCAGATTAGCGCTTGGCGAAACACAGCTGGTATCTGAAACGAAATCATTCTTGGAAAGCAACGGAGTGTATTTGGATGCCTTCAATCGGCCAGCAAAAAAACGATCAAAAACTTGCATATTGGTTAAGAATTTGCCCGCCGACACCAGTATAGATGAAATCCGAAAAATGTTTGAGAAGCATGGCGAATTGGCGCGATTTCTAATGCCGAAACATGGACTGGCCGCACTAATAGATTTCATAGAACCATTCGAAGCGAAAAAAGCGTTCAACAAACTAGCGTATTCGCAGTTTAAAAGTGGACCTTTGTATTTAGAATGGGCACCCGAAAACGTATTCGCCAAGTCTGCAAAGAAATTAGATCCAGATACAAATAATAAAGTAGTTGAAGATACAGAAAAAGTTAGTCAAAACATACAATCAAACGAAGTCGAAGATCGTAAAGAAAATGTTTCTCAGGAAACTTTAATCGTCGAAGGTGACCCGGAAAAAGACACGATGTTGTTTGTGAAAAATCTTAATTTTAAAACCACAGAAGAAACATTAAAATCGCATTTCTCAGTTTGCGGAAAAATACATAATGTAACAATAGCAAAGAAGAAAGACCCTAAAAATCCAGGACAATTCCTTTCAATGGGCTACGGATTTGTGCAATTCTACAGGAGAGAACACGCAAACGAAGCACTTAAGTTACTGCAAAGTTCTACTTTAGATGGAAAAACATTAGAATTGAAACGTTCTGAAAAGGGAAACGCGAATGACATTGCGTCTTCAAAAAAGAGCAACAAAACTATAGAACAAAATGGAACGAAAATATTAATTCGAAATGTTCCTTTCCAAGCAAACAAGAAAGAGCTACACGAAATTTTCAGGGCTTTTGGTGAAATTAAAACATTAAGACTGCCAAAAAAATTAACAGCTGGTTCAGACCAACATCGAGGTTTTGCTTTTGTGGATTATCACTCAAAAGCCGATTCTAAGAGTGCTTTTGATGCTCTATGTCAGTCAACTCATCTCTACGGCAGACGGTTAGTGTTAGAATGGGCAGACCAATCTGACGAAAATGAGGATATCGAATTGCTTCGAAAGAGAACCGCACAATCATTTAATGCTAAAAGCCCAGTTGGCAAGAAGTCTAGAAAGGGTGCTGTTGATGTTGAAGAATTTGTTGATGGTGGCAATGATATATAA

Protein

MSAAVRLALGETQLVSETKSFLESNGVYLDAFNRPAKKRSKTCILVKNLPADTSIDEIRKMFEKHGELARFLMPKHGLAALIDFIEPFEAKKAFNKLAYSQFKSGPLYLEWAPENVFAKSAKKLDPDTNNKVVEDTEKVSQNIQSNEVEDRKENVSQETLIVEGDPEKDTMLFVKNLNFKTTEETLKSHFSVCGKIHNVTIAKKKDPKNPGQFLSMGYGFVQFYRREHANEALKLLQSSTLDGKTLELKRSEKGNANDIASSKKSNKTIEQNGTKILIRNVPFQANKKELHEIFRAFGEIKTLRLPKKLTAGSDQHRGFAFVDYHSKADSKSAFDALCQSTHLYGRRLVLEWADQSDENEDIELLRKRTAQSFNAKSPVGKKSRKGAVDVEEFVDGGNDI

Similarity

Belongs to the glycosyl hydrolase 18 family.

Uniprot

A0A194PS80   S4PC35   A0A1Q3G5K5   A0A1E1W9U3   A0A194QSP4   A0A2H1V0F5   + More
A0A212EYT9   A0A195BL35   A0A158NJ81   A0A087ZW87   F4WKP3   E2C8C8   A0A151JNX8   R4WD88   E2ACU6   E9J1R7   A0A2J7QFG0   A0A0L7QVE2   A0A0C9RLJ9   A0A026WHA4   A0A2A3ELB7   A0A232F1G7   A0A310SFN0   A0A0C9QVR2   K7J2N4   A0A067RDW7   A0A151I7J3   A0A2J7QFG1   A0A151WE68   A0A0M9AAJ5   A0A154PSE7   B4QN96   A0A151JV74   A0A1B6H1H4   Q9VT19   A0A034VD99   Q8MYR4   A0A0J9RSQ3   A0A146KXU6   B4HL79   A0A1B6DA95   A0A1Y1KRJ6   A0A1E1X3S8   A0A0T6AWD8   B7P9S2   B3NCJ7   A0A0N8D7N8   A0A0P5AAE1   A0A0K8VFR1   A0A146LM56   A0A0N8ED27   A0A0N8EDT9   A0A0P6IFK5   A0A0N8E7N9   A0A3B0K241   A0A2R7W034   A0A0P6IEF3   B5DKH5   A0A0P5UPH6   A0A164Y9I0   A0A0P5ZSM3   A0A0P5YEG7   A0A0P5UNI0   B4HCI1   N6TRR6   E9FYZ2   A0A0P5UV99   A0A0P6AWV0   B4PEF0   D6WFN0   A0A0K8R7W1   W8AG79   A0A131XQ96   A0A1E1XL30   A0A034VGP5   A0A131XCW6   A0A293M476   A0A2R5LLW1   A0A1W4V9V3   A0A0B6ZN92   A0A1Z5L6D8   A0A131YHJ8   B4L6E8   A0A023FBD9   L7MF44   A0A224Z3I9   A0A224XJU3   B4M823   A0A1B0GB28   A0A0V0G4J1   A0A2S2PGI8   A0A0J7P2V9   A0A2H8TTY7   B4JKK6   A0A069DX14   T1P9H8   A0A2S2QI99   A0A2C9JVY6   A0A2C9JVY7   E0VMX2  

Pubmed

26354079    23622113    22118469    21347285    21719571    20798317    + More
23691247    21282665    24508170    30249741    28648823    20075255    24845553    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25348373    22936249    26823975    28004739    28503490    15632085    23537049    21292972    17550304    18362917    19820115    24495485    29209593    28049606    28528879    26830274    25474469    25576852    28797301    26334808    15562597    20566863   

EMBL

KQ459595    KPI95609.1    GAIX01004336    JAA88224.1    GEYN01000171    JAV44818.1    + More
GDQN01007318    JAT83736.1    KQ461154    KPJ08538.1    ODYU01000113    SOQ34338.1    AGBW02011442    OWR46650.1    KQ976453    KYM85392.1    ADTU01017554    GL888206    EGI65135.1    GL453652    EFN75799.1    KQ978858    KYN27928.1    AK417478    BAN20693.1    GL438582    EFN68744.1    GL767674    EFZ13307.1    NEVH01015298    PNF27321.1    KQ414727    KOC62529.1    GBYB01007826    JAG77593.1    KK107207    QOIP01000002    EZA55442.1    RLU25578.1    KZ288215    PBC32500.1    NNAY01001352    OXU24267.1    KQ776210    OAD52210.1    GBYB01007824    JAG77591.1    KK852529    KDR21962.1    KQ978411    KYM94101.1    PNF27320.1    KQ983247    KYQ46159.1    KQ435713    KOX79323.1    KQ435127    KZC14845.1    CM000363    EDX09879.1    KQ981703    KYN37438.1    GECZ01001240    JAS68529.1    AE014296    AAF50237.1    GAKP01017686    JAC41266.1    AY113652    AAM29657.1    CM002912    KMY98692.1    GDHC01018767    GDHC01004230    JAP99861.1    JAQ14399.1    CH480815    EDW40898.1    GEDC01014684    JAS22614.1    GEZM01078271    JAV62800.1    GFAC01005286    JAT93902.1    LJIG01022662    KRT79377.1    ABJB010008934    ABJB010119310    ABJB010169200    ABJB010440598    ABJB010528436    ABJB010601637    ABJB010653854    ABJB010765204    ABJB010886724    ABJB011127405    DS666743    EEC03344.1    CH954178    EDV51227.1    GDIP01060743    JAM42972.1    GDIP01201874    JAJ21528.1    GDHF01014570    JAI37744.1    GDHC01010737    JAQ07892.1    GDIQ01038652    JAN56085.1    GDIQ01036556    JAN58181.1    GDIQ01005235    JAN89502.1    GDIQ01053756    JAN40981.1    OUUW01000011    SPP86732.1    KK854197    PTY12939.1    GDIQ01007365    JAN87372.1    CH379063    EDY72024.1    GDIP01110130    JAL93584.1    LRGB01000930    KZS15023.1    GDIP01040540    JAM63175.1    GDIP01060744    JAM42971.1    GDIP01114186    JAL89528.1    CH479335    EDW26944.1    APGK01057631    KB741280    KB632170    ENN70996.1    ERL89498.1    GL732527    EFX87687.1    GDIP01108184    JAL95530.1    GDIP01037293    JAM66422.1    CM000159    EDW92988.1    KQ971319    EFA00249.2    GADI01006667    JAA67141.1    GAMC01019225    GAMC01019223    GAMC01019221    GAMC01019217    GAMC01019216    JAB87330.1    GEFM01006567    JAP69229.1    GFAA01003382    JAU00053.1    GAKP01017685    JAC41267.1    GEFH01005015    JAP63566.1    GFWV01010377    MAA35106.1    GGLE01006390    MBY10516.1    HACG01023254    CEK70119.1    GFJQ02003994    JAW02976.1    GEDV01009838    JAP78719.1    CH933812    EDW05944.1    GBBI01000388    JAC18324.1    GACK01003225    JAA61809.1    GFPF01009987    MAA21133.1    GFTR01008147    JAW08279.1    CH940653    EDW62299.1    CCAG010006530    GECL01003148    JAP02976.1    GGMR01015930    MBY28549.1    LBMM01000257    KMR02737.1    GFXV01005614    MBW17419.1    CH916370    EDW00109.1    GBGD01000459    JAC88430.1    KA645359    AFP59988.1    GGMS01008220    MBY77423.1    DS235327    EEB14728.1   

Proteomes

UP000053268    UP000053240    UP000007151    UP000078540    UP000005205    UP000005203    + More
UP000007755    UP000008237    UP000078492    UP000000311    UP000235965    UP000053825    UP000053097    UP000279307    UP000242457    UP000215335    UP000002358    UP000027135    UP000078542    UP000075809    UP000053105    UP000076502    UP000000304    UP000078541    UP000000803    UP000001292    UP000001555    UP000008711    UP000268350    UP000001819    UP000076858    UP000008744    UP000019118    UP000030742    UP000000305    UP000002282    UP000007266    UP000192221    UP000009192    UP000008792    UP000092444    UP000036403    UP000001070    UP000076420    UP000009046   

PRIDE

Q9VT19    Q8MYR4    L7MF44   

Pfam

PF00076   RRM_1        + More
PF01607   CBM_14
PF00704   Glyco_hydro_18
PF10601   zf-LITAF-like

Interpro

IPR034423   RBM19_RRM5        + More
IPR035979   RBD_domain_sf       
IPR034421   RBM19_RRM6       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR034418   RMB19_RRM1       
IPR034419   RBM19_RRM3       
IPR034420   RBM19_RRM4       
IPR003954   RRM_dom_euk       
IPR029070   Chitinase_insertion_sf       
IPR001223   Glyco_hydro18_cat       
IPR001579   Glyco_hydro_18_chit_AS       
IPR002557   Chitin-bd_dom       
IPR017853   Glycoside_hydrolase_SF       
IPR036508   Chitin-bd_dom_sf       
IPR011583   Chitinase_II       
IPR006629   LITAF       

SUPFAM

SSF54928   SSF54928        + More
SSF57625   SSF57625       
SSF51445   SSF51445       
SSF54556   SSF54556       

Gene 3D

3.30.70.330     3.10.50.10    

CDD

cd12571  RRM6_RBM19
cd12318  RRM5_RBM19_like
cd12564  RRM1_RBM19
cd12567  RRM3_RBM19
cd12569  RRM4_RBM19

ProteinModelPortal

A0A194PS80   S4PC35   A0A1Q3G5K5   A0A1E1W9U3   A0A194QSP4   A0A2H1V0F5   + More
A0A212EYT9   A0A195BL35   A0A158NJ81   A0A087ZW87   F4WKP3   E2C8C8   A0A151JNX8   R4WD88   E2ACU6   E9J1R7   A0A2J7QFG0   A0A0L7QVE2   A0A0C9RLJ9   A0A026WHA4   A0A2A3ELB7   A0A232F1G7   A0A310SFN0   A0A0C9QVR2   K7J2N4   A0A067RDW7   A0A151I7J3   A0A2J7QFG1   A0A151WE68   A0A0M9AAJ5   A0A154PSE7   B4QN96   A0A151JV74   A0A1B6H1H4   Q9VT19   A0A034VD99   Q8MYR4   A0A0J9RSQ3   A0A146KXU6   B4HL79   A0A1B6DA95   A0A1Y1KRJ6   A0A1E1X3S8   A0A0T6AWD8   B7P9S2   B3NCJ7   A0A0N8D7N8   A0A0P5AAE1   A0A0K8VFR1   A0A146LM56   A0A0N8ED27   A0A0N8EDT9   A0A0P6IFK5   A0A0N8E7N9   A0A3B0K241   A0A2R7W034   A0A0P6IEF3   B5DKH5   A0A0P5UPH6   A0A164Y9I0   A0A0P5ZSM3   A0A0P5YEG7   A0A0P5UNI0   B4HCI1   N6TRR6   E9FYZ2   A0A0P5UV99   A0A0P6AWV0   B4PEF0   D6WFN0   A0A0K8R7W1   W8AG79   A0A131XQ96   A0A1E1XL30   A0A034VGP5   A0A131XCW6   A0A293M476   A0A2R5LLW1   A0A1W4V9V3   A0A0B6ZN92   A0A1Z5L6D8   A0A131YHJ8   B4L6E8   A0A023FBD9   L7MF44   A0A224Z3I9   A0A224XJU3   B4M823   A0A1B0GB28   A0A0V0G4J1   A0A2S2PGI8   A0A0J7P2V9   A0A2H8TTY7   B4JKK6   A0A069DX14   T1P9H8   A0A2S2QI99   A0A2C9JVY6   A0A2C9JVY7   E0VMX2  

PDB

2CPH     E-value=5.06017e-28,     Score=310

KEGG

101747007    K14787 multiple RNA-binding domain-containing protein 1 | (RefSeq) probable RNA-binding protein 19

GO

GO:0003723   GO:0016740   GO:0005576   GO:0005975   GO:0008061   GO:0004553   GO:0006030   GO:0004386   GO:0003729   GO:0005634   GO:0045292   GO:0005730   GO:0000381   GO:0016607   GO:1990904   GO:0000166   GO:0003676   GO:0006468   GO:0007165   GO:0005085   GO:0005089   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

Length:

400

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00402

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00346

outside

1  -  400

 

 

Pi

203.052784

Theta

175.304073

Tajima's D

0.596709

CLR

0.03699

CSRT

0.547522623868807

Interpretation

Uncertain