SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04617  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005499
Annotation
PREDICTED:_transmembrane_9_superfamily_member_3_[Papilio_xuthus]
Full name
Transmembrane 9 superfamily member      
Location in the cell
PlasmaMembrane   Reliability : 4.94
 

Sequence

CDS
ATGAAATTTTTATATATATTGTTTATAATGTGGACTATAGTTCATTGCGATGAACACACACATTCCTATAAAGATGGAGAACAAGTAGTGCTTTGGATGAACACCGTGGGTCCGTACCATAACCGACAAGAGACATATGCCTATTTTTCGCTCCCGTTTTGCGTTGGCACTAAAGTCACTATTGGACATTATCATGAAACTCTATCTGAAGCTCTACAAGGCGTCGAATTGGAGTTCAGCGGTCTTGATATTACGTTTAAGGAAAATGTGCCGGCGCAGCAATTTTGTGCCATCGAACTCAACGATCAAACTTACAAAGCTTTCGTTTATGCTGTCAAAAACCATTATTGGTATCAAATGTATATAGACGATCTGCCAATATGGGGCACTGTAGGTGAGATTGATGGAGACCATTTTTACATCTGGACTCACAAGAAATTTGACATTGGGTATAATGGAAACAGGATTGTTGAAGTCAACCTTACAGCAGAAAACAAAGAACGGCTTAGTCCTGATGCAAAGATCCCATTTACATATGAAGTTAACTGGAAGAAGAGCAACATAAATTTTGAAGATCGATTTGATAAGTACTTAGATCCAAACTTTTTTCAACACCGAATTCATTGGTTCAGTATTTTCAATAGCTTCATGATGGTTATATTTTTAGTTGGTCTTGTTTCTATGATACTCATGAGAACTCTTCGAAAAGATTATGCTAGATATTCCAAAGATGATGATCTTGATGATTTGGAAAAGGATCTAGGTGATGAATATGGTTGGAAACAGGTTCATGGGGATGTATTCAGACCTGTACCACATTTATCTTTATTTTCAGCATTAGTTGGTTCTGGCTATCAATTGACTGTAGTAACTTTGGCAGTTATTATTTTCACTATTTTTGGAGAATTGTATACTGAAAGGGGCTCACTCTTATCAACTGCAATCTTTATTTATGCAGCTACATCACCAGTCAATGGTTATTTTGGAGGATCCCTGTATTCTCGAATGGGTGGTAAATTGTGGATAAAACAAATGTTGTTGTCAGCATTTTTCTTACCAGTCTTAGTTTGTGGGACTGCCTTTTTTATTAACTTTATTGCTATGTACTATCATGCTTCTAGAGCTATTCCTTTTGGCAGTATGATTGCTGTGATGTCTATCTGCACTTTTGTGATTTTACCATTAACTCTTGTTGGAACGGTACTTGGAAGGAATTTAGCTGGACAACCAGATTACCCTTGTAGAATCAATGCAGTTCCAAGGCCTATTCCAGAGAAGAAGTGGTTTATGGAACCTCTAATAATCATTATTGTTGGAGGAGTATTACCATTTGGATCTATCTTTATTGAAATGTACTTTATCTTTACATCATTCTGGGCATACAAGATCTACTATGTGTATGGGTTTATGTTGCTAGTGTTCTTAATATTGATGATTGTAACTGTATGTGTCACTATTGTTTGTACTTATTTCTTGTTGAATGCTGAAGATTACCGCTGGCAGTGGACCAGTTTCTTATCTGCAGGGAGCACTGCAGTTTATGTGTATTTATATTCATTTTACTATTTCTTGTTTAAAACAAAGATGTATGGTTTATTTCAAACAACATTTTATTTTGGCTATATGGCTTTGTTCAGTTTAGCTTTAGGCATTATTTGTGGGACAGTTGGCTATGTAGGCACAAGCATATTTGTACGTAAAATTTACTCTACAGTAAAAATTGATTAA
Protein
MKFLYILFIMWTIVHCDEHTHSYKDGEQVVLWMNTVGPYHNRQETYAYFSLPFCVGTKVTIGHYHETLSEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTYKAFVYAVKNHYWYQMYIDDLPIWGTVGEIDGDHFYIWTHKKFDIGYNGNRIVEVNLTAENKERLSPDAKIPFTYEVNWKKSNINFEDRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKDDDLDDLEKDLGDEYGWKQVHGDVFRPVPHLSLFSALVGSGYQLTVVTLAVIIFTIFGELYTERGSLLSTAIFIYAATSPVNGYFGGSLYSRMGGKLWIKQMLLSAFFLPVLVCGTAFFINFIAMYYHASRAIPFGSMIAVMSICTFVILPLTLVGTVLGRNLAGQPDYPCRINAVPRPIPEKKWFMEPLIIIIVGGVLPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAGSTAVYVYLYSFYYFLFKTKMYGLFQTTFYFGYMALFSLALGIICGTVGYVGTSIFVRKIYSTVKID

Summary

Similarity
Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
Feature
chain  Transmembrane 9 superfamily member
EMBL
BABH01013963    GDQN01007772    JAT83282.1    JTDY01004221    KOB68438.1    ODYU01000113    + More
SOQ34337.1    KQ459595    KPI95608.1    KQ461154    KPJ08537.1    NEVH01001340    PNF43049.1    PYGN01000711    PSN41847.1    GECZ01028632    JAS41137.1    GEDC01029412    GEDC01014129    GEDC01008228    GEDC01003901    JAS07886.1    JAS23169.1    JAS29070.1    JAS33397.1    GL446573    EFN87604.1    KK107077    QOIP01000010    EZA60571.1    RLU18092.1    GECU01014666    JAS93040.1    KQ976542    KYM81098.1    RLU17751.1    GL888243    EGI63922.1    ADTU01022529    KQ979608    KYN20326.1    HACG01037973    CEK84838.1    KQ981965    KYN31698.1    GL440100    EFN66277.1    GALX01004647    JAB63819.1    JR049989    AEY61149.1    GEZM01086079    GEZM01086078    JAV59790.1    KQ434889    KZC10238.1    BT128383    AEE63341.1    GBYB01006416    JAG76183.1    APGK01050932    KB741178    KB632325    ENN73181.1    ERL92379.1    GAPW01000679    GEHC01000356    JAC12919.1    JAV47289.1    GFDL01000878    JAV34167.1    GFWZ01000416    MBW20406.1    GFAH01000627    JAV47762.1    KQ971319    EEZ99577.2    CH477829    EAT35846.1    CH477932    EAT34964.1    KQ435878    KOX70046.1    NNAY01001794    OXU22901.1    KQ977574    KYN01835.1    KQ414786    KOC60858.1    KQ765605    OAD53865.1    GANO01002015    JAB57856.1    AMQN01009728    KB306072    ELU00390.1    UFQS01003941    UFQS01003963    UFQT01003941    UFQT01003963    SSX16046.1    SSX16063.1    SSX35379.1    AXCN02001915    KB203382    ESO84885.1    GGFL01014636    MBW78814.1    KK118595    KFM73388.1    GGFK01001518    MBW34839.1    GGFK01001478    MBW34799.1    GGFM01001155    MBW21906.1    JH816628    EKC24508.1    GECL01003441    JAP02683.1    GBGD01000938    JAC87951.1    GDKW01000747    JAI55848.1    ACPB03009657    GGLE01004981    MBY09107.1    GG666580    EEN52477.1    GFTR01007327    JAW09099.1    KQ982807    KYQ50406.1    IAAA01009326    IAAA01009327    LAA02340.1    GFWV01020146    MAA44874.1    GEFM01003925    JAP71871.1    GADI01008190    JAA65618.1    ABJB010062463    ABJB010412400    ABJB010611035    ABJB010702141    DS902191    EEC16233.1    GALA01001211    JAA93641.1    GFDF01003933    JAV10151.1    KQ429656    KOF65281.1    CCAG010019770    GFAC01003286    JAT95902.1    KK853125    KDR11018.1    GFPF01012768    MAA23914.1    GEDV01004202    JAP84355.1    GACK01007308    JAA57726.1    RQTK01000274    RUS82727.1    KZ288466    PBC25445.1    GBBK01001658    JAC22824.1    PZQS01000001    PVD37830.1    JRES01000089    KNC34221.1    FR904367    CDQ61092.1    BX004975    BX248127    BC046021    AAH46021.1    IACK01231287    LAA98174.1   
Pfam
PF02990   EMP70        + More
PF00102   Y_phosphatase
Interpro
IPR004240   EMP70        + More
IPR000387   TYR_PHOSPHATASE_dom       
IPR000242   PTPase_domain       
IPR029021   Prot-tyrosine_phosphatase-like       
IPR003595   Tyr_Pase_cat       
SUPFAM
SSF52799   SSF52799       
Gene 3D

Ontologies

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.998678
 
 
Length:
575
Number of predicted TMHs:
9
Exp number of AAs in TMHs:
204.92801
Exp number, first 60 AAs:
0.02143
Total prob of N-in:
0.14069
outside
1  -  208
TMhelix
209  -  231
inside
232  -  278
TMhelix
279  -  301
outside
302  -  310
TMhelix
311  -  333
inside
334  -  345
TMhelix
346  -  368
outside
369  -  380
TMhelix
381  -  403
inside
404  -  432
TMhelix
433  -  455
outside
456  -  469
TMhelix
470  -  492
inside
493  -  504
TMhelix
505  -  524
outside
525  -  538
TMhelix
539  -  561
inside
562  -  575
 
 

Population Genetic Test Statistics

Pi
165.289767
Theta
189.822713
Tajima's D
-0.356105
CLR
183.287855
CSRT
0.276886155692215
Interpretation
Uncertain
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