Gene

KWMTBOMO04604  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005317

Annotation

PREDICTED:_THO_complex_subunit_5_homolog_[Amyelois_transitella]

Location

Bomo_Chr8(-):10619096-10623766      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.903

CDS

ATGGGAAAAGAAGAAGTAACGGCTGTTAAGAAACGGCGCAAATTAAATACAAGTACATCAAATGACGGAACAAAGCCAGTTCCCGTTGATGTATACAAGCGTGTTGTTGAATTTGAAGAAGCTGAAGCTCATCTGCGTCCAGCTGATAAGGATGCTGCCTTTTTCAATAAAACATGCCAAGACATAAGGCAACTTTTTAAAGAGATTGCAGAGTTAAAAACTAAAGAAACATTGGAGGCTAAAGAAAAGATAAATGCAAAAAGAGTGGAAGCTTCATTACTGCTGGTTGCGTTAAAGAAATTAAATCGCCTGGAGAAAGTACGAACTAGAGCTGGTCGTGATGCGCTCCATAAAGAGAAACAGAGAGTTGATTCCACACATTTACTGTTACAAAATTTACTTTACGAAGCAGATCACTTAAACAAAGAAGTAACTAAATGTTTACAATTCAAATCTAAAGATGAAGAAATAGATCTTGTGCCTCTTGAAGAATTCTATAAAAATGCACCTCCTGATATTATTAGATCAGAGGTCACAAAGGCTGATGAACATCAATTACAATTAGCCCGACTGGAGTGGGAGTTACGTCAACGTCGTGAATTATCTGAAGCCTGTAATGAACTCATATCTTCCAAGGAACGAGTAGCAGCTGCCATTGCTGCTGCACGTTCTAGACTTGATGCATTGGCTCCACATCTGAAAGATGTCTTGAAATCCACTAAACCTTTGCAAGAATGTCTTGCTCTACGCTTGGATGAAAAACGTGATGAAGCCAGGGCCGCAAGCTTGCTTCCAGCATCACTATTCCTACTATTTAAAAATGCAAACGCATATTCTGATATTTTAGGAAGCAAAGTTATTAGTGTTGGTGTTTGCGGTGATGAAGATGAAGCTCGCCGGCATGATCAAAACAATGTTGAAAATGATATTATTTCATCAAATGAGTCAGATTCAGATCAAGAAAATAATGATGAAGATCAACAAACCAAAAAGAAACGACATCACAGAACTAAAAACGTATCTAAAGAAGACAAAGCAGAAGCTAAAATAAAACGAGTATTCAAGAAACATCCTTTAAATGTACAAGTTTCAGTTAAAGCAGAAGATGGTACTGCATTGAATCTCATATTATCATACCTCATAAACTTGAAAATTATAGTTGTGAAGTTTACTGTATCGCTACCCAAACCTGTCACTGGTGTATCTGCTGCTGATGTTCTAAATGGACATTCTATTTTAAATGAACTGTACCCAGGGGATACGGGAGATGATTCACCCCACCCTGCAACTTCTTATTTACTAAAAAATGCAGGTATATCGGAAAGCTTTTCTTATTTCATACCAGAAATTGGACGCCCATACGTTTGGGCACAAAGAATGTGTGGAATTGATTTTATGACTTCAGAATTGAATGAGCAATCTGTTAGAAGAGCTGTTGAACCGTGTCCTAATCTCAGTGTCGCCACTGTTGAAAATTTTATCATGACATTGAAAAAGAGACTAAAATGTAGAGTAAAACTTATGCATGAGCTACAAGATCTAGAATCAGGAAAGATTTCACCACCAAAAGGAAGCTTGCCTCCTTCTATGCGTCTAGCAGGTTCTTTGACTCAGTGGCAGTCTGTTGGTTGGCCTGAATACAGTCAGGCTCCATCAACAGCTTTTCTTGTAACTGAAGGTTTAGTATCTGCAAATGATTTACTTTATAGAGCGATAATTACCAGACAATCAGCTAAGTTGGTGGCTTTAGTTGCCCTCAGAAGCGATTATCCTAAGAGCGTGCCAATATTTTCTCTAACTTTACACTGGAATGGCACTCATCACGCAGGTATTAATGATGATATCCGGGATATTGAAAGAGTCGTAAATACTGAGATAGGTTTAGAGGAACGCAAGCACTGCACCCTTTCTACTCAAATAACAAAATTATTAGCCTGTCTTGATATTCTATTGGAAACAAGCGATTCCCCAGAATTTCCACCAGACAAAGTTATACTTCATCCAGTTAGAGGACGTAACAGGAGCAAGCCATATAAATTTGTAAACCAAGGTGTTGGTGTCTTTGTACATCACTGA

Protein

MGKEEVTAVKKRRKLNTSTSNDGTKPVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKTCQDIRQLFKEIAELKTKETLEAKEKINAKRVEASLLLVALKKLNRLEKVRTRAGRDALHKEKQRVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEEFYKNAPPDIIRSEVTKADEHQLQLARLEWELRQRRELSEACNELISSKERVAAAIAAARSRLDALAPHLKDVLKSTKPLQECLALRLDEKRDEARAASLLPASLFLLFKNANAYSDILGSKVISVGVCGDEDEARRHDQNNVENDIISSNESDSDQENNDEDQQTKKKRHHRTKNVSKEDKAEAKIKRVFKKHPLNVQVSVKAEDGTALNLILSYLINLKIIVVKFTVSLPKPVTGVSAADVLNGHSILNELYPGDTGDDSPHPATSYLLKNAGISESFSYFIPEIGRPYVWAQRMCGIDFMTSELNEQSVRRAVEPCPNLSVATVENFIMTLKKRLKCRVKLMHELQDLESGKISPPKGSLPPSMRLAGSLTQWQSVGWPEYSQAPSTAFLVTEGLVSANDLLYRAIITRQSAKLVALVALRSDYPKSVPIFSLTLHWNGTHHAGINDDIRDIERVVNTEIGLEERKHCTLSTQITKLLACLDILLETSDSPEFPPDKVILHPVRGRNRSKPYKFVNQGVGVFVHH

Uniprot

H9J725   A0A2H1VWJ8   A0A3S2PGM4   A0A194PWT4   A0A194QT81   A0A212EYR7   + More
A0A067QMF0   A0A2J7RRE6   F4WXM1   A0A151WSW5   A0A195FQK8   A0A026W386   A0A151JR84   A0A195BXH5   A0A195CRL6   A0A158NUX2   A0A336KZH7   A0A1B6MH52   A0A182JCL4   A0A336LT34   A0A1B6ENV1   D6WXN9   E2BKD1   E9ID99   A0A182G622   A0A1B0DAS6   A0A088AJP7   U5EKA3   A0A084VZT0   A0A2A3E2Y0   A0A1L8DCK4   A0A1W4XIP5   Q16PI2   K7IRU0   A0A1Q3EZ22   A0A232FHG3   A0A154P0F8   A0A0T6AVV8   A0A0N0U5D8   A0A0L7R1B4   B0XHF9   A0A182NNB4   A0A182QXG2   E1ZZE0   A0A182WZV9   A0A182HXH3   A0A182LI76   A0A182P603   A7UUW8   A0A1S4GM06   Q7Q2P2   A0A182R2R0   A0A182VN66   A0A182UH59   A0A0C9Q2T3   A0A182JS38   A0A182MED6   A0A182WAQ9   A0A1B0GHL3   A0A1B6C294   A0A310SSV8   A0A182YI35   H3DEQ7   Q4RSS3   A0A1Y1LYS6   A0A2M4BFD2   A0A2M4BFD1   W5MPB8   A0A182SR75   H2UY09   M3XJD5   A0A2M4CS67   A0A0K8TMH3   A0A2M4CS99   H3AB96   A0A182FT65   H3AB95   H9GES1   K1R6Q2   A0A210Q6D9   K1PM37   A0A3Q3BXD0   A0A218UJ95   A0A2K6LJ63   A0A3B4GLP3   U3JX82   A0A3P8NDV3   A0A3P9CJJ3   A0A2D4NX59   A0A3Q4MC66   A0A2D4IW92   F7G201   A0A3B4GLR0   A0A2D4JZQ7   I3K7T4   T1E3X5   G3VHX2   A0A3M0K4R3   J3S191  

Pubmed

19121390    26354079    22118469    24845553    21719571    24508170    + More
30249741    21347285    18362917    19820115    20798317    21282665    26483478    24438588    17510324    20075255    28648823    20966253    12364791    25244985    15496914    28004739    21551351    9215903    26369729    21881562    22992520    28812685    25186727    17495919    23758969    21709235    23025625   

EMBL

BABH01013946    ODYU01004863    SOQ45178.1    RSAL01000041    RVE50855.1    KQ459595    + More
KPI95595.1    KQ461154    KPJ08524.1    AGBW02011442    OWR46636.1    KK853247    KDR09377.1    NEVH01000610    PNF43385.1    GL888425    EGI61091.1    KQ982769    KYQ50928.1    KQ981335    KYN42582.1    KK107455    QOIP01000010    EZA50540.1    RLU17580.1    KQ978622    KYN29735.1    KQ976401    KYM92646.1    KQ977444    KYN02754.1    ADTU01026810    ADTU01026811    UFQS01000715    UFQT01000715    SSX06360.1    SSX26714.1    GEBQ01004697    JAT35280.1    UFQT01000099    SSX19893.1    GECZ01030158    JAS39611.1    KQ971362    EFA07957.1    GL448783    EFN83855.1    GL762454    EFZ21357.1    JXUM01147161    KQ570310    KXJ68389.1    AJVK01013388    GANO01001885    JAB57986.1    ATLV01018955    KE525256    KFB43474.1    KZ288409    PBC26103.1    GFDF01009969    JAV04115.1    CH477781    EAT36266.1    GFDL01014557    JAV20488.1    NNAY01000187    OXU30184.1    KQ434782    KZC04630.1    LJIG01022695    KRT79206.1    KQ435783    KOX74624.1    KQ414668    KOC64632.1    DS233154    EDS28388.1    AXCN02001904    GL435343    EFN73432.1    APCN01005305    AAAB01008968    EDO63511.1    EAA13229.4    GBYB01008318    JAG78085.1    AXCM01000075    AJWK01005316    GEDC01029662    JAS07636.1    KQ760688    OAD59358.1    CAAE01014999    CAG08559.1    GEZM01045195    JAV77868.1    GGFJ01002619    MBW51760.1    GGFJ01002618    MBW51759.1    AHAT01005282    AFYH01195898    AFYH01195899    AFYH01195900    AFYH01195901    AFYH01195902    AFYH01195903    GGFL01004018    MBW68196.1    GDAI01002508    JAI15095.1    GGFL01004019    MBW68197.1    AAWZ02027449    JH818316    EKC29636.1    NEDP02004827    OWF44303.1    JH815834    EKC19934.1    MUZQ01000290    OWK53442.1    AGTO01020421    IACN01036342    LAB50331.1    IACK01134014    LAA88530.1    IACL01025405    LAB01935.1    AERX01026869    GAAZ01002565    JAA95378.1    AEFK01093719    AEFK01093720    AEFK01093721    QRBI01000121    RMC06050.1    JU176161    GBEX01003503    AFJ51684.1    JAI11057.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000053240    UP000007151    UP000027135    + More
UP000235965    UP000007755    UP000075809    UP000078541    UP000053097    UP000279307    UP000078492    UP000078540    UP000078542    UP000005205    UP000075880    UP000007266    UP000008237    UP000069940    UP000249989    UP000092462    UP000005203    UP000030765    UP000242457    UP000192223    UP000008820    UP000002358    UP000215335    UP000076502    UP000053105    UP000053825    UP000002320    UP000075884    UP000075886    UP000000311    UP000076407    UP000075840    UP000075882    UP000075885    UP000007062    UP000075900    UP000075903    UP000075902    UP000075881    UP000075883    UP000075920    UP000092461    UP000076408    UP000007303    UP000018468    UP000075901    UP000005226    UP000008672    UP000069272    UP000001646    UP000005408    UP000242188    UP000264840    UP000197619    UP000233180    UP000261460    UP000016665    UP000265100    UP000265160    UP000261580    UP000002280    UP000005207    UP000007648    UP000269221   

PRIDE

H9J725   

Pfam

PF09766   FmiP_Thoc5        + More
PF13906   AA_permease_C
PF13520   AA_permease_2

Interpro

IPR019163   THO_Thoc5        + More
IPR029485   CAT_C       
IPR002293   AA/rel_permease1       

ProteinModelPortal

H9J725   A0A2H1VWJ8   A0A3S2PGM4   A0A194PWT4   A0A194QT81   A0A212EYR7   + More
A0A067QMF0   A0A2J7RRE6   F4WXM1   A0A151WSW5   A0A195FQK8   A0A026W386   A0A151JR84   A0A195BXH5   A0A195CRL6   A0A158NUX2   A0A336KZH7   A0A1B6MH52   A0A182JCL4   A0A336LT34   A0A1B6ENV1   D6WXN9   E2BKD1   E9ID99   A0A182G622   A0A1B0DAS6   A0A088AJP7   U5EKA3   A0A084VZT0   A0A2A3E2Y0   A0A1L8DCK4   A0A1W4XIP5   Q16PI2   K7IRU0   A0A1Q3EZ22   A0A232FHG3   A0A154P0F8   A0A0T6AVV8   A0A0N0U5D8   A0A0L7R1B4   B0XHF9   A0A182NNB4   A0A182QXG2   E1ZZE0   A0A182WZV9   A0A182HXH3   A0A182LI76   A0A182P603   A7UUW8   A0A1S4GM06   Q7Q2P2   A0A182R2R0   A0A182VN66   A0A182UH59   A0A0C9Q2T3   A0A182JS38   A0A182MED6   A0A182WAQ9   A0A1B0GHL3   A0A1B6C294   A0A310SSV8   A0A182YI35   H3DEQ7   Q4RSS3   A0A1Y1LYS6   A0A2M4BFD2   A0A2M4BFD1   W5MPB8   A0A182SR75   H2UY09   M3XJD5   A0A2M4CS67   A0A0K8TMH3   A0A2M4CS99   H3AB96   A0A182FT65   H3AB95   H9GES1   K1R6Q2   A0A210Q6D9   K1PM37   A0A3Q3BXD0   A0A218UJ95   A0A2K6LJ63   A0A3B4GLP3   U3JX82   A0A3P8NDV3   A0A3P9CJJ3   A0A2D4NX59   A0A3Q4MC66   A0A2D4IW92   F7G201   A0A3B4GLR0   A0A2D4JZQ7   I3K7T4   T1E3X5   G3VHX2   A0A3M0K4R3   J3S191  

KEGG

101745691    K13174 THO complex subunit 5 | (RefSeq) THO complex subunit 5 homolog

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0006406   GO:0032786   GO:0000228   GO:0003729   GO:0000445   GO:0022857   GO:0016021   GO:0005654   GO:0046784   GO:0030224   GO:0000784   GO:2000002  

PANTHER

PTHR13375  

Length:

691

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02987

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00155

outside

1  -  691

 

 

Pi

257.154372

Theta

140.578695

Tajima's D

-0.914944

CLR

321.564278

CSRT

0.155792210389481

Interpretation

Possibly Positive selection