Silkworm Genome Informatics Database

Gene

KWMTBOMO04602 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005318

Annotation

Variable_lymphocyte_receptor_C?_partial_[Operophtera_brumata]

Location

Bomo_Chr8(-):10595499-10598256 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.056

CDS

ATGACGCTCAAACACCTCTGCCTGTTGTTGCTGATCACACTAGTCACTTGTGAAGCTGGGATAAAATCCGACGAAACGCCTATTCCAGTTGAAACAGATAATCAATTTCCACCTGAAACTAATTCCGAATTAGACGGAAGTATTCTAGATGGCAGCGGTGGAGGTCCTATCGAAGAACCAATAGAAGTTACTACCCTATCTTCTGCTCCATTACTCGAAGATGTTCAGTTGACAGCTAATGCCGAAGGAACTGCGACACAGTCCGGTGATTCAACATGCCCAAAACCGTGCGTGTGCCACACTGAGGGTGATTCGAGCAATTTCGTAGTAGACTGTTCAGGATATGGGCTCACTGAATTCCCAACTCCTTTAGATGTACGAACTACAATACTAAACTTACAAAACAACAAACTGACTGGGATACCGAAGGATGTAGCTTCCCTCAAAAATTTGAAAGTTTTAAATGCTAATAAAAACTCTATCATGGGCTTGGATTTAGGCTCAGTCAGCGAGCTGCCTGGTTTAACGGTCTTAAAACTAGGAAATAACAGATTAATTGAATACCCACAAGATTTGAAAAACGGATTTTCACTAACAAAATTGGAAGAGCTGGATTTAGGCGGCAATGATATCAGGACAGCTCTCACTACAGATTTGTTCTCGAATTTTAAAGGCCTTCGTAAGTTGACTTTACCCTCTGCTGCGTCATCTTTAAATGAAGAATTATGTAACTCTTTTAAAGGCACCTTAGAAAGCGTCTGCACAGAATCATGCAAAGAACATTTATTTGAATGCCCAGATGCACGACGACCATTGGAAGGCGAAGGTTGGCTAGACGCTATTTCACCTGGCACTATTGCTCTTACATCAATATATGCAGACGAATCTCATTCTGCAATCAAGCCTGAGGTAGCTAAAACTGCACAAGCAGACACTAAGCAAACAGAAACACAAAAGAACACAGAGCCTTTACAAAATAGTCAGGTGTCATTGAGAACGGCTATTAACAGTGCACCTATTGCAACAGGTCAAACAACTTCGACTGTAGAGTCTAATAAAGAGAAGGATACGGATGTTAAGGTAGCCGTAGGAGCAACTACTGCGGAAACTAAGTCTGGAGGAGTAGATAAATCAATCATTGGGATGATGATAGCCGGTATGGTGGTAATAGTAGCAGGCATTACAATCAAAAAGAATTGGAGTTCCATCAGAAACAGATTCAGTTCATCACCAAGAGCAGCAAATGAACGTTCAGCTACAACTGCTAATGGGACCACTCCAGAAGAAGTGCCTCTGCAAGAAAAGTCACCTGTTTAA

Protein

MTLKHLCLLLLITLVTCEAGIKSDETPIPVETDNQFPPETNSELDGSILDGSGGGPIEEPIEVTTLSSAPLLEDVQLTANAEGTATQSGDSTCPKPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIPKDVASLKNLKVLNANKNSIMGLDLGSVSELPGLTVLKLGNNRLIEYPQDLKNGFSLTKLEELDLGGNDIRTALTTDLFSNFKGLRKLTLPSAASSLNEELCNSFKGTLESVCTESCKEHLFECPDARRPLEGEGWLDAISPGTIALTSIYADESHSAIKPEVAKTAQADTKQTETQKNTEPLQNSQVSLRTAINSAPIATGQTTSTVESNKEKDTDVKVAVGATTAETKSGGVDKSIIGMMIAGMVVIVAGITIKKNWSSIRNRFSSSPRAANERSATTANGTTPEEVPLQEKSPV

Uniprot

H9J726 A0A0L7LVW4 A0A2H1VWG9 A0A212EYW2 B8LKW0 A0A194QY68 + More
A0A194PRL5

Pubmed

19121390 26227816 22118469 26354079

EMBL

BABH01013946 JTDY01000002 KOB79519.1 ODYU01004863 SOQ45180.1 AGBW02011442 + More
OWR46634.1 EF676384 ABR16290.1 KQ461154 KPJ08521.1 KQ459595 KPI95593.1

Proteomes

UP000005204 UP000037510 UP000007151 UP000053240 UP000053268

PRIDE

H9J726

Pfam

PF01462 LRRNT + More
PF13855 LRR_8

Interpro

IPR003591   Leu-rich_rpt_typical-subtyp        + More
IPR001611   Leu-rich_rpt
IPR000372   LRRNT
IPR032675   LRR_dom_sf

Gene 3D

3.80.10.10

ProteinModelPortal

H9J726 A0A0L7LVW4 A0A2H1VWG9 A0A212EYW2 B8LKW0 A0A194QY68 + More
A0A194PRL5

PDB

4BSU E-value=2.58079e-06, Score=123

KEGG

101745303 no KO assigned | (RefSeq) leucine-rich repeat-containing protein 40-like

GO

GO:0016021 GO:0005515 GO:0008270 GO:0006468 GO:0020037 GO:0016491 GO:0007165 GO:0015031 GO:0016020 GO:0016742 GO:0003824

SignalP

Position: 1 - 19, Likelihood: 0.998776

Length:

438

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

17.37461

Exp number, first 60 AAs:

0.00994

Total prob of N-in:

0.00250

outside

1 - 378

TMhelix

379 - 396

inside

397 - 438

Pi

159.34135

Theta

172.775499

Tajima's D

-0.623121

CLR

0.700276

CSRT

0.217389130543473

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
28556443	NTEPLQNSQVSLR	100.00	8e-20
28556443	RPLEGEGWLDAISPGTIALTSIYADESHSAIKPEVAK	100.00	2e-06
28556443	LTLPSAASSLNEELCNSFK	100.00	3e-06
28556443	LTLPSAASSLNEELCNSFK	100.00	7e-06
28556443	LIEYPQDLK	100.00	7e-06
28556443	LIEYPQDLK	100.00	7e-06

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics