Gene

KWMTBOMO04595  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005488

Annotation

replication_factor_C_(activator_1)_5_[Bombyx_mori]

Location

Bomo_Chr8(+):10487760-10495653      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.124 Nuclear   Reliability : 1.498

CDS

ATGACTGTTGGGGAAACAGGCCAAAATTTGCCATGGGTTGAAAAATATCGCCCAAAAAGATTGGATGATTTAGTATCTCATGATGATATAATAAAAACAATAAATCAATTTATGAAAGAGAATCAGCTCCCACATCTACTATTCTACGGTCCTCCTGGAACCGGGAAGACATCTACCATTCTAGCCTGTGCCAAACAAATGTACACTCCACAGCAATTTAGTTCGATGGTGTTGGAACTTAATGCTTCTGACGATAGAGGCATTGGCATTGTTAGAGGTCAGATACTCAGTTTTGCCTCAACAAGGACTATATTTAAAGCAGGACCTAAATTAATTATACTTGATGAAGCTGATGCTATGACAAATGACGCTCAGAATGCACTAAGGAGAATTATAGAGAAGTACACCGAGAATGTAAGGTTTTGCATAATATGCAACTACCTGGGTAAAATTATTCCAGCATTACAGTCGCGGTGTACGCGATTTCGTTTTGCCCCTCTCAAGCAAGATCAAATTGTGCCGAGATTACAAGAAATTGTCACAACGGAAGGTGTAAAAATGTCAGAGGGCGGAATGAAGGCGCTTCTCACCTTGTCCGGGGGTGATATGAGAAAGGTTTTGAATACGCTTCAAAGCACGTGGCTGGCGTATCGTGACGTCACCGAAGATAATGTTTACACTTGCGTCGGCCACCCCCTCCGCGCCGATATCGACAGCATACTCAATTGGTTGCTAAACGAAAATGATTTTTCCGCCTGCTTTAAATCCATACAAGACTTGAAGATTGCAAAAGGATTAGCACTGAGCGATATATTGGCTGAAGTCCATACTATCATACAGAGAGTGAAACTGCCTCCAGAAGTATTAGTGTCATTGCTCATAAAGATGTCAGACGCTGAAGCGAGGTTGGCGAGCGGAAGCAGCGAGCGGGTTGAACTTGCCGCGCTCATCGCGAGCTTCCAGATCGCTAGGGATCAAGTCAAACTAGACACAGAAGTTTCGTAG

Protein

MTVGETGQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQVKLDTEVS

Uniprot

Q2F659   A0A3S2TNG6   S4P928   A0A2Z5TTY8   A0A1Q3G0M8   A0A067R4E7   + More
Q16VR5   A0A023ER07   U5ESE9   A0A182HAP6   A0A2J7PJU0   A0A139WCT9   A0A1B6DUV7   A0A2C9JKL7   A0A182N870   A0A1J1IAJ4   V4AWH6   A0A084W2G8   A0A182K9I9   A0A182IMC7   Q7Q9N2   W5JCV6   A0A182LBF5   A0A182HP46   A0A182XJB5   A0A182QQI7   A0A182YNQ6   A0A182V331   A0A182UEZ7   A0A182RTR4   A0A1B6FDY5   K1QQQ5   A0A1W4X2G0   A0A182P5A0   A0A232F3N8   A0A182M4X1   A0A182F2T5   A0A154P2K9   A0A1S3J4Y9   A0A2T7Q049   A0A182WAC9   A0A1B6LAT8   A0A0B7A0Z1   J9K528   A0A0A9YYY3   A0A2A3ELP8   A0A0L7QUI2   A0A088A1X2   F6Y531   A0A2P2I735   Q7ZTM5   Q5XGD2   A0A226PAH3   A0A2H8TJB8   A0A1L8HQV3   A0A2L2Y8Q0   Q6GQ59   A0A3B3S7U3   A0A087USP0   A0A336KMU1   F4WQY4   G3PMC0   H3BBL3   A0A1Y1KP68   A0A3P8XIM5   A0A3Q3VPU7   G3PMB2   A0A3Q3EVH8   A0A1B0AP95   A0A3Q0SRZ7   A0A069DRP0   A0A3B4XMX6   A0A3Q2EBV7   A0A0P5KZI9   A0A0A1WSZ3   A0A1W4Z691   E2AVB8   A0A158NTL4   H3DDU4   Q4RTX1   A0A2U9BU49   A0A034WEI1   A0A3Q2XA33   A0A3Q4HQD6   A0A1B0AK70   V9L2K7   A0A3B4E910   E9HFI1   A0A3B4UZ41   A0A147B151   W8BR34   C3KHF7   R7ULZ2   H9GNG0   Q6DRK4   A0A0P5LST8   A0A0F8CFP6   W5K0V0   A0A3Q3LB57   A0A060Y653  

Pubmed

23622113    26760975    24845553    17510324    24945155    26483478    + More
18362917    19820115    15562597    23254933    24438588    12364791    14747013    17210077    20920257    23761445    20966253    25244985    22992520    28648823    26383154    25401762    26823975    20431018    27762356    24621616    26561354    29240929    21719571    9215903    28004739    25069045    26334808    25830018    20798317    21347285    15496914    25348373    25186727    24402279    21292972    24495485    21881562    15256591    23594743    25835551    25329095    24755649   

EMBL

DQ311213    ABD36158.1    RSAL01000041    RVE50849.1    GAIX01005711    JAA86849.1    + More
FX985787    BBA93674.1    GFDL01001695    JAV33350.1    KK852704    KDR18066.1    CH477583    EAT38657.1    GAPW01002534    JAC11064.1    GANO01002388    JAB57483.1    JXUM01123046    KQ566673    KXJ69915.1    NEVH01024944    PNF16607.1    KQ971362    KYB25740.1    GEDC01007838    JAS29460.1    CVRI01000044    CRK96588.1    KB201304    ESO97856.1    ATLV01019619    KE525275    KFB44412.1    AAAB01008900    EAA09454.3    ADMH02001599    ETN61891.1    APCN01002909    AXCN02001004    GECZ01021378    JAS48391.1    JH816734    EKC39302.1    NNAY01001115    OXU25090.1    AXCM01000427    KQ434792    KZC05458.1    PZQS01000001    PVD39041.1    GEBQ01026776    GEBQ01019236    GEBQ01003757    GEBQ01002845    JAT13201.1    JAT20741.1    JAT36220.1    JAT37132.1    HACG01027708    HACG01027709    CEK74573.1    CEK74574.1    ABLF02026864    GBHO01006190    GBRD01007803    GDHC01013596    JAG37414.1    JAG58018.1    JAQ05033.1    KZ288215    PBC32648.1    KQ414735    KOC62219.1    AAMC01076673    AAMC01076674    AAMC01076675    AAMC01076676    IACF01004241    LAB69835.1    BC044712    CM004466    AAH44712.1    OCU02132.1    BC084510    CR926393    AAH84510.1    CAJ83540.1    AWGT02000122    OXB76459.1    GFXV01002286    MBW14091.1    CM004467    OCT98461.1    IAAA01013400    LAA03710.1    BC072889    AAH72889.1    KK121385    KFM80379.1    UFQS01000530    UFQT01000530    SSX04665.1    SSX25028.1    GL888275    EGI63497.1    AFYH01046357    AFYH01046358    GEZM01082902    JAV61236.1    JXJN01001282    GBGD01002151    JAC86738.1    GDIP01169486    GDIQ01185072    LRGB01000115    JAJ53916.1    JAK66653.1    KZS20756.1    GBXI01012667    JAD01625.1    GL443064    EFN62614.1    ADTU01026005    CAAE01014996    CAG08161.1    CP026251    AWP07571.1    GAKP01006774    JAC52178.1    JW873112    AFP05630.1    GL732636    EFX69502.1    GCES01002271    JAR84052.1    GAMC01002800    JAC03756.1    BT082372    ACQ58079.1    AMQN01007197    KB300180    ELU07083.1    CU207223    AY648755    AAT68073.1    GDIQ01168829    JAK82896.1    KQ042181    KKF18331.1    FR907743    CDQ87206.1   

Proteomes

UP000283053    UP000027135    UP000008820    UP000069940    UP000249989    UP000235965    + More
UP000007266    UP000076420    UP000075884    UP000183832    UP000030746    UP000030765    UP000075881    UP000075880    UP000007062    UP000000673    UP000075882    UP000075840    UP000076407    UP000075886    UP000076408    UP000075903    UP000075902    UP000075900    UP000005408    UP000192223    UP000075885    UP000215335    UP000075883    UP000069272    UP000076502    UP000085678    UP000245119    UP000075920    UP000007819    UP000242457    UP000053825    UP000005203    UP000008143    UP000186698    UP000198419    UP000261540    UP000054359    UP000007755    UP000007635    UP000008672    UP000265140    UP000261620    UP000261660    UP000092460    UP000261340    UP000261360    UP000265020    UP000076858    UP000192224    UP000000311    UP000005205    UP000007303    UP000246464    UP000264820    UP000261580    UP000092445    UP000261440    UP000000305    UP000261420    UP000265000    UP000014760    UP000001646    UP000000437    UP000018467    UP000261640    UP000193380   

PRIDE

Q2F659   

Pfam

PF00004   AAA        + More
PF08542   Rep_fac_C

Interpro

IPR003959   ATPase_AAA_core        + More
IPR013748   Rep_factorC_C       
IPR008921   DNA_pol3_clamp-load_cplx_C       
IPR027417   P-loop_NTPase       
IPR003593   AAA+_ATPase       

SUPFAM

SSF52540   SSF52540        + More
SSF48019   SSF48019       

ProteinModelPortal

Q2F659   A0A3S2TNG6   S4P928   A0A2Z5TTY8   A0A1Q3G0M8   A0A067R4E7   + More
Q16VR5   A0A023ER07   U5ESE9   A0A182HAP6   A0A2J7PJU0   A0A139WCT9   A0A1B6DUV7   A0A2C9JKL7   A0A182N870   A0A1J1IAJ4   V4AWH6   A0A084W2G8   A0A182K9I9   A0A182IMC7   Q7Q9N2   W5JCV6   A0A182LBF5   A0A182HP46   A0A182XJB5   A0A182QQI7   A0A182YNQ6   A0A182V331   A0A182UEZ7   A0A182RTR4   A0A1B6FDY5   K1QQQ5   A0A1W4X2G0   A0A182P5A0   A0A232F3N8   A0A182M4X1   A0A182F2T5   A0A154P2K9   A0A1S3J4Y9   A0A2T7Q049   A0A182WAC9   A0A1B6LAT8   A0A0B7A0Z1   J9K528   A0A0A9YYY3   A0A2A3ELP8   A0A0L7QUI2   A0A088A1X2   F6Y531   A0A2P2I735   Q7ZTM5   Q5XGD2   A0A226PAH3   A0A2H8TJB8   A0A1L8HQV3   A0A2L2Y8Q0   Q6GQ59   A0A3B3S7U3   A0A087USP0   A0A336KMU1   F4WQY4   G3PMC0   H3BBL3   A0A1Y1KP68   A0A3P8XIM5   A0A3Q3VPU7   G3PMB2   A0A3Q3EVH8   A0A1B0AP95   A0A3Q0SRZ7   A0A069DRP0   A0A3B4XMX6   A0A3Q2EBV7   A0A0P5KZI9   A0A0A1WSZ3   A0A1W4Z691   E2AVB8   A0A158NTL4   H3DDU4   Q4RTX1   A0A2U9BU49   A0A034WEI1   A0A3Q2XA33   A0A3Q4HQD6   A0A1B0AK70   V9L2K7   A0A3B4E910   E9HFI1   A0A3B4UZ41   A0A147B151   W8BR34   C3KHF7   R7ULZ2   H9GNG0   Q6DRK4   A0A0P5LST8   A0A0F8CFP6   W5K0V0   A0A3Q3LB57   A0A060Y653  

PDB

1SXJ     E-value=5.75804e-84,     Score=791

KEGG

692838    K10756 replication factor C subunit 3/5 | (RefSeq) replication factor C (activator 1) 5

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
03430    Mismatch repair - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0003677   GO:0006260   GO:0005634   GO:0005663   GO:0006261   GO:0060041   GO:1900264   GO:0003689   GO:0031390   GO:0019899   GO:0043142   GO:0020037   GO:0016491   GO:0007165   GO:0015031   GO:0016020   GO:0016742   GO:0003824  

Length:

334

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0898399999999999

Exp number, first 60 AAs:

0.00854

Total prob of N-in:

0.01853

outside

1  -  334

 

 

Pi

256.859622

Theta

186.202382

Tajima's D

1.235235

CLR

0

CSRT

0.720813959302035

Interpretation

Uncertain