Gene

KWMTBOMO04594  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005323

Annotation

ALY_[Bombyx_mori]

Location

Bomo_Chr8(-):10484724-10487029      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.242

CDS

ATGGTTGATCAAATTGAAATGGCACTGGATGATATTATAAAAGCCAACAAAAAGACAAGGATTGGAGGTGGTGCTGGAAGAAAATTTGATGCAAACAAAAGAACAGGACGTGGAGGCGGTGCTGGATTTCGTAGCAACCGCTCTGGTGGTGTACAACGAGGTAGAAATCGTGGAGGCATAACGAAATCTACCAACTATTCGAGGGGTGATGTGAACAGCACTTGGAAACATGATATGTTCAATGATTTTGGTGAGAGGAAACTTCAAAGAAACAGTGGGACCATAACAACTGGTCCTACCAAGCTGCTTGTATCCAATTTGGACTTTGGAGTATCAGATTCAGATATAAAGGAACTATTTTCGGAATTTGGCATCCTCAAAAGTGCATCTGTACATTATGATCGGTCAGGTAGATCTTTAGGTACTGCAGATGTTGTGTTTGAAAGAAAAGCAGATGCTGTGAAGGCTATGAAACAGTATAACGGAGTGCCACTTGATGGACGGGCAATGAATATACAATTGGCAACATCTGAAATCAATACTTTAAGGCCCGAGGCTAGAAATCGAATTGGTGGTGCGAGTGTGGGAGGTACTATACGAAACAATCCTAAAAGAGGAGGTGGAGGAATTAGAAATCAAAGCAATAGTGGAGCACGTGGGGGAAACAGAAGAGGACGTGGTGGTGCAGGCAGAGGCAAACGACCAGTACCTACTGCAGAACAATTAGATGCAGAGCTTGATGCATATGTGAAAGAAATCAAGTGA

Protein

MVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPKRGGGGIRNQSNSGARGGNRRGRGGAGRGKRPVPTAEQLDAELDAYVKEIK

Uniprot

Q1HE02   E1AW12   A0A2A4IVF5   A0A194QSL2   A0A194PRK5   A0A2H1X3F8   + More
A0A212FPS4   A0A0L7LNF9   A0A3S2NLP4   A0A154P6L7   A0A2A3ESD0   S4PXR6   A0A1L8DHB6   A0A088AH65   A0A0N1ITJ0   A0A1B0CTC0   A0A146LHH0   A0A0L7R9G8   A0A1Y1MVQ3   N6UAL5   V5I8V5   A0A026WLL2   A0A2P8Z9S7   E2ADL0   A0A1W4XE25   A0A1B0DNA7   A0A067QLD4   A0A195E5X6   E9IQT3   A0A195BA74   E2BUS2   A0A195EUU0   F4X7Q4   A0A195D0H6   A0A151X6D4   A0A1Q3EXQ0   R4UJ53   A0A023ELN1   A0A2J7RS03   A0A1B0C3L7   A0A1A9Z9V0   A0A0K8TM95   D3TME7   A0A0T6B4N7   A0A1A9VL32   U4U061   A0A1L8DG42   W5JRY2   B4PS22   B3P2S4   A0A182MUD5   U5ELI9   Q9V3E7   A0A182X204   A0A182L488   A0A182I667   A0A182S020   A0A336LWX8   A0A182WIA1   Q16ED0   B4I4N3   Q7QI92   A0A182UY82   B4QYZ5   B0WLB4   A0A182FI40   A0A1A9WLV3   A0A182N7N0   A0A023F2E4   D6X2T6   A0A182QLX3   A0A1I8NU24   A0A069DQ92   A0A2M4BY31   A0A182PHV2   A0A0P4VL88   T1HS23   A0A1W4UFF4   A0A2M4ABE5   A0A182JXN5   A0A1L8EDI4   A0A158NPJ2   A0A1B6GMN9   A0A224XMG4   A0A0K8UBD0   A0A034WRF0   A0A1W4USK3   A0A182YNL2   A0A1B6GXN9   A0A1J1HS57   A0A182TDU0   B4LZC6   T1PBJ0   A0A1I8NDB1   A0A0A9ZI31   A0A146L8V9   Q293K7   B4GM00   B3LYC2  

Pubmed

19121390    26354079    22118469    26227816    23622113    26823975    + More
28004739    23537049    24508170    30249741    29403074    20798317    24845553    21282665    21719571    24945155    26483478    26369729    20353571    20920257    23761445    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20966253    17510324    12364791    14747013    17210077    25474469    18362917    19820115    26334808    27129103    21347285    25348373    25244985    25315136    25401762    15632085   

EMBL

BABH01013933    DQ497195    ABF55960.1    HQ005513    ADM33940.1    NWSH01005989    + More
PCG63765.1    KQ461154    KPJ08513.1    KQ459595    KPI95583.1    ODYU01013104    SOQ59788.1    AGBW02000920    OWR55737.1    JTDY01000457    KOB77078.1    RSAL01000041    RVE50847.1    KQ434827    KZC07569.1    KZ288189    PBC34665.1    GAIX01004573    JAA87987.1    GFDF01008235    JAV05849.1    KQ435794    KOX73851.1    AJWK01027427    GDHC01012247    JAQ06382.1    KQ414626    KOC67520.1    GEZM01022998    JAV88620.1    APGK01042496    APGK01042497    KB741006    ENN75662.1    GALX01004025    JAB64441.1    KK107182    QOIP01000003    EZA55989.1    RLU24573.1    PYGN01000134    PSN53253.1    GL438820    EFN68372.1    AJVK01007475    AJVK01007476    AJVK01007477    KK853292    KDR08846.1    KQ979608    KYN20287.1    GL764900    EFZ17092.1    KQ976542    KYM81132.1    GL450746    EFN80545.1    KQ981965    KYN31662.1    GL888873    EGI57527.1    KQ977004    KYN06420.1    KQ982482    KYQ55838.1    GFDL01014999    JAV20046.1    KC632260    AGM32074.1    JXUM01009515    JXUM01009516    GAPW01003446    KQ560285    JAC10152.1    KXJ83282.1    NEVH01000596    PNF43614.1    JXJN01025026    GDAI01002116    JAI15487.1    CCAG010002358    EZ422599    ADD18875.1    LJIG01009806    KRT82344.1    KB630127    ERL83420.1    GFDF01008727    JAV05357.1    ADMH02000632    ETN65494.1    CM000160    EDW96422.1    CH954181    EDV48096.1    AXCM01001601    GANO01001385    JAB58486.1    AF172637    AE014297    AAD46930.1    AAF54070.1    APCN01003569    UFQS01000185    UFQT01000185    SSX00889.1    SSX21269.1    CH478842    CH477327    EAT32586.1    EAT43446.1    CH480821    EDW55176.1    AAAB01008807    EAA04421.3    CM000364    EDX11935.1    DS231983    EDS30398.1    GBBI01003528    JAC15184.1    KQ971372    EFA09827.1    AXCN02000581    GBGD01002656    JAC86233.1    GGFJ01008828    MBW57969.1    GDKW01003228    JAI53367.1    ACPB03009184    GGFK01004758    MBW38079.1    GFDG01002028    JAV16771.1    ADTU01022425    ADTU01022426    ADTU01022427    GECZ01013353    GECZ01006061    GECZ01002426    JAS56416.1    JAS63708.1    JAS67343.1    GFTR01004152    JAW12274.1    GDHF01028365    JAI23949.1    GAKP01002197    JAC56755.1    GECZ01002580    JAS67189.1    CVRI01000020    CRK90853.1    CH940650    EDW68161.1    KA646034    AFP60663.1    GBHO01001259    JAG42345.1    GDHC01015529    JAQ03100.1    CM000070    EAL29208.2    CH479185    EDW38574.1    CH902617    EDV41785.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000283053    UP000076502    UP000242457    UP000005203    UP000053105    UP000092461    UP000053825    UP000019118    UP000053097    UP000279307    UP000245037    UP000000311    UP000192223    UP000092462    UP000027135    UP000078492    UP000078540    UP000008237    UP000078541    UP000007755    UP000078542    UP000075809    UP000069940    UP000249989    UP000235965    UP000092460    UP000092445    UP000092444    UP000078200    UP000030742    UP000000673    UP000002282    UP000008711    UP000075883    UP000000803    UP000076407    UP000075882    UP000075840    UP000075900    UP000075920    UP000008820    UP000001292    UP000007062    UP000075903    UP000000304    UP000002320    UP000069272    UP000091820    UP000075884    UP000007266    UP000075886    UP000095300    UP000075885    UP000015103    UP000192221    UP000075881    UP000005205    UP000076408    UP000183832    UP000075902    UP000008792    UP000095301    UP000001819    UP000008744    UP000007801   

PRIDE

Q1HE02    E1AW12    Q9V3E7   

Pfam

PF13865   FoP_duplication        + More
PF00076   RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR025715   FoP_C       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

Q1HE02   E1AW12   A0A2A4IVF5   A0A194QSL2   A0A194PRK5   A0A2H1X3F8   + More
A0A212FPS4   A0A0L7LNF9   A0A3S2NLP4   A0A154P6L7   A0A2A3ESD0   S4PXR6   A0A1L8DHB6   A0A088AH65   A0A0N1ITJ0   A0A1B0CTC0   A0A146LHH0   A0A0L7R9G8   A0A1Y1MVQ3   N6UAL5   V5I8V5   A0A026WLL2   A0A2P8Z9S7   E2ADL0   A0A1W4XE25   A0A1B0DNA7   A0A067QLD4   A0A195E5X6   E9IQT3   A0A195BA74   E2BUS2   A0A195EUU0   F4X7Q4   A0A195D0H6   A0A151X6D4   A0A1Q3EXQ0   R4UJ53   A0A023ELN1   A0A2J7RS03   A0A1B0C3L7   A0A1A9Z9V0   A0A0K8TM95   D3TME7   A0A0T6B4N7   A0A1A9VL32   U4U061   A0A1L8DG42   W5JRY2   B4PS22   B3P2S4   A0A182MUD5   U5ELI9   Q9V3E7   A0A182X204   A0A182L488   A0A182I667   A0A182S020   A0A336LWX8   A0A182WIA1   Q16ED0   B4I4N3   Q7QI92   A0A182UY82   B4QYZ5   B0WLB4   A0A182FI40   A0A1A9WLV3   A0A182N7N0   A0A023F2E4   D6X2T6   A0A182QLX3   A0A1I8NU24   A0A069DQ92   A0A2M4BY31   A0A182PHV2   A0A0P4VL88   T1HS23   A0A1W4UFF4   A0A2M4ABE5   A0A182JXN5   A0A1L8EDI4   A0A158NPJ2   A0A1B6GMN9   A0A224XMG4   A0A0K8UBD0   A0A034WRF0   A0A1W4USK3   A0A182YNL2   A0A1B6GXN9   A0A1J1HS57   A0A182TDU0   B4LZC6   T1PBJ0   A0A1I8NDB1   A0A0A9ZI31   A0A146L8V9   Q293K7   B4GM00   B3LYC2  

PDB

2F3J     E-value=1.08593e-33,     Score=356

KEGG

733049    K12881 THO complex subunit 4 | (RefSeq) ALY

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)
03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0005654   GO:0031965   GO:0071013   GO:0000346   GO:0003729   GO:0005634   GO:0000398   GO:0071011   GO:0003676   GO:0000166   GO:0020037   GO:0016491   GO:0007165   GO:0015031   GO:0016020   GO:0016742   GO:0003824  

Length:

254

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03802

outside

1  -  254

 

 

Pi

188.070768

Theta

173.527734

Tajima's D

0.120254

CLR

0.622527

CSRT

0.403929803509824

Interpretation

Uncertain