Gene

KWMTBOMO04591

Pre Gene Modal

BGIBMGA005325

Annotation

PREDICTED:_high_mobility_group_protein_20A_[Amyelois_transitella]

Location

Bomo_Chr8(-):10453085-10456629      View in EpiBrowser

Full name

High mobility group protein 20A      

Alternative Name

HMG box-containing protein 20A

Transcription factor

HMG

Location in the cell

Nuclear   Reliability : 4.194

CDS

ATGGAAAGCGATTCTTTAAAATCGGACGTTGTAAATACAGTGAATTCAGAAGTGCAGCCTATTAATATTGAAAAAGACCCGAAACCTGTGACCACTGACTCAAGCTTGACTCAAGTGCCTATAGTATCTAATGTTCATGTGCTTGCTGAAACGCCCGTTGCGATTGACACGGCGGGTGCTTTAAAAGAAGTTCCAAAAACATCACCTAAAAAGCCCAAAAAAAGAAAACCCAAAGCAGCTCGCGATACAACTGCACCCCGTCAACCTCTCACAGGTTATGTAAGATTTTTAAATGAGAGAAGAGATCAGTTGCGAGCACAACAGCCAGATTTGGGTTTTGCAGAATTGACCAGACAGTTAGCTAGCGAGTGGAGTAGACTTCCAGCTGAAGAAAAACAACAATACTTAGATGCTGCAGATCAGGATAAAGAAAGATATGTTAAAGAATGTGCGGAATACAAAAGAACAAATGCTTATAAAGAGTTCACAAAACAACAATCTGATCTGCAAGATGGTAGCTTATCAAAGAAGTTACGGCAGGTTCCTCAAGTAGACGCTTCAGTTTCTGGGGGTACCCAACCAGGAGAAAGTACAGTGTATAGTGCTTCTACAACAAACATGTCTTCACGTCAGACTACCCCACCAAGACCAAGACCATGTATTAATCCTACATCTGGTGAAATGGAAATACCAATCTTCACAGATCAATTTCTGCAACATAACAAACTGAGAGAATCTGAGTTAAGACAATTAAGAAAGGCAAATTCAGATTACGAACAGCAGAATGCAATCTTACATCGTCACGCAGAAGAGGTAAGCGGCGCTACATCGAAACTCAGAGCTGAAACAGCTGCAGCAGCTGAAAGGACTGCTGCTTTGCTTGCTCATAAACGTAGTCTGGTCGCAGCCTTAGTGCAAGGTCTTCAGACATTAGCTTTACCAGGTGGACCAACTGGGGCTACTGAAGATAATATTGATGAATACATGGAAAAATTACAGAATCTCACTAACATAATAGATAATAAAAATACAGCAATAATTAAACAGGCTCGAGAGATTTTAAATAAAATAGAACTGCCAAATACCTAG

Protein

MESDSLKSDVVNTVNSEVQPINIEKDPKPVTTDSSLTQVPIVSNVHVLAETPVAIDTAGALKEVPKTSPKKPKKRKPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEYKRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVDASVSGGTQPGESTVYSASTTNMSSRQTTPPRPRPCINPTSGEMEIPIFTDQFLQHNKLRESELRQLRKANSDYEQQNAILHRHAEEVSGATSKLRAETAAAAERTAALLAHKRSLVAALVQGLQTLALPGGPTGATEDNIDEYMEKLQNLTNIIDNKNTAIIKQAREILNKIELPNT

Keywords

Coiled coil   Complete proteome   DNA-binding   Nucleus   Reference proteome   Transcription   Transcription regulation  

Feature

chain  High mobility group protein 20A

Uniprot

H9J733   A0A2H1VL89   A0A3S2NWR1   S4Q016   A0A212FPT5   A0A194PWR9   + More
A0A194QU41   A0A0L7LGJ7   A0A2P8Z7C0   A0A2J7Q1Q4   A0A067QWM6   A0A087ZS20   A0A026WUJ9   A0A0L7RCI5   A0A2A3E8C8   A0A0N0U728   A0A0T6BEV8   A0A091TPM0   A0A2I0M6W7   D6WST5   A0A091PFI5   A0A091QN12   A0A093HMP6   A0A091L6L4   A0A093T4E7   A0A093FJA3   A0A091GL32   A0A091PQQ4   A0A091NZ74   A0A093FDE3   A0A091HFY5   A0A091K8K3   A0A091WKJ8   A0A093J0S1   A3KNQ1   A0A0F7ZDN9   A0A091F998   J3S8X3   A0A1W7RGS8   A0A310SB53   Q5ZKF4   A0A3L8S3E5   A0A1W5B6S1   A0A0K8S0I9   A0A1W5B5S8   H0YZS2   A0A098LZN7   W5NUL0   A0A212CSS4   Q0VCL5   U3K870   A0A384BE40   A0A091JU00   A0A341CUQ1   A0A340Y6B2   A0A2Y9EXC1   A0A2U4CJW0   R0JK63   A0A2D4FMB5   F1SJ88   A0A2Y9P151   A0A218U9U5   G1SPD6   A0A2D4PFJ7   G1MVZ9   A0A1D5PL23   A0A2H6N4Y8   T1DBE6   A0A093PH96   A0A087R180   A0A093PAZ2   A0A091HXN2   A0A091TUY5   A0A3B3SN35   U3FWV0   A0A1A8GRH1   A0A232FE35   A0A094KWE2   H9GHR1   A0A3P8Z6Z3   A0A1A8R862   A0A1A8RCJ4   A0A1A8IYX6   A0A1A8C0N6   A0A1A8AXT3   A0A0P7V069   K7IPT5   A0A0Q3TCF0   U3J7K5   A0A3P9LHQ1   M7BHP5   A0A3Q3APJ7   A0A3Q1FNN4   A0A2I4CU74   A0A293N3F2   A0A3P9I1C3   H2L8Q2   A0A3Q3VZL5  

Pubmed

19121390    23622113    22118469    26354079    26227816    29403074    + More
24845553    24508170    30249741    23371554    18362917    19820115    23594743    23025625    26358130    15642098    30282656    25727380    20360741    20809919    19393038    30723633    21993624    20838655    15592404    23758969    29240929    23915248    28648823    21881562    25069045    20075255    23749191    17554307    23624526   

EMBL

BABH01013932    ODYU01003194    SOQ41619.1    RSAL01000041    RVE50845.1    GAIX01000573    + More
JAA91987.1    AGBW02000920    OWR55734.1    KQ459595    KPI95580.1    KQ461154    KPJ08510.1    JTDY01001277    KOB74316.1    PYGN01000163    PSN52387.1    NEVH01019388    PNF22507.1    KK853162    KDR10436.1    KK107102    QOIP01000005    EZA59633.1    RLU22680.1    KQ414615    KOC68702.1    KZ288340    PBC27754.1    KQ435711    KOX79521.1    LJIG01001056    KRT85884.1    KK462230    KFQ79831.1    AKCR02000033    PKK25426.1    KQ971352    EFA06355.1    KL386963    KFP90255.1    KK702625    KFQ28289.1    KL206269    KFV80720.1    KL302172    KFP51487.1    KL423209    KFW89519.1    KK396936    KFV57777.1    KL448290    KFO82036.1    KK677438    KFQ10020.1    KK648212    KFQ00236.1    KK623281    KFV52276.1    KL510670    KFO86298.1    KK502053    KFP20086.1    KL411005    KFR02091.1    KL217003    KFV72599.1    BX005076    BC133951    AAI33952.1    GBEX01001546    JAI13014.1    KK719745    KFO65402.1    JU174787    AFJ50313.1    GDAY02001084    JAV50343.1    KQ764883    OAD54305.1    AJ720130    QUSF01000080    RLV94839.1    GBKD01000984    JAG46634.1    ABQF01049764    GBSI01001091    JAC95405.1    AMGL01041921    AMGL01041922    AMGL01041923    MKHE01000013    OWK09033.1    BC120108    AAI20109.1    AGTO01021662    KK533007    KFP28587.1    KB743702    EOA97381.1    IACJ01079060    LAA48376.1    AEMK02000056    DQIR01206362    HDB61839.1    MUZQ01000564    OWK50361.1    IACN01064254    LAB55866.1    AADN05000047    IACI01058863    LAA24667.1    GAAZ01001099    GBKC01001630    JAA96844.1    JAG44440.1    KL669396    KFW76228.1    KL226042    KFM07234.1    KL225356    KFW71410.1    KL218013    KFP01064.1    KK405725    KFQ82061.1    GAEP01000725    JAB54096.1    HAEB01021432    HAEC01005680    SBQ73757.1    NNAY01000347    OXU29021.1    KL346381    KFZ56053.1    AAWZ02026435    HAEI01007384    HAEH01017825    SBS01608.1    HAEF01002143    HAEG01016550    SBS02979.1    HAED01016061    HAEE01014501    SBR02506.1    HADZ01008485    HAEA01010027    SBP72426.1    HADY01020545    HAEJ01014578    SBP59030.1    JARO02001282    KPP75931.1    LMAW01002690    KQK78078.1    ADON01108935    ADON01108936    KB567559    EMP27762.1    GFWV01021187    MAA45915.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053268    UP000053240    UP000037510    + More
UP000245037    UP000235965    UP000027135    UP000005203    UP000053097    UP000279307    UP000053825    UP000242457    UP000053105    UP000053872    UP000007266    UP000053584    UP000053760    UP000053119    UP000053283    UP000053875    UP000000437    UP000052976    UP000000539    UP000276834    UP000192224    UP000007754    UP000002356    UP000009136    UP000016665    UP000261681    UP000252040    UP000265300    UP000248484    UP000245320    UP000008227    UP000248483    UP000197619    UP000001811    UP000001645    UP000053258    UP000053286    UP000054081    UP000054308    UP000261540    UP000215335    UP000001646    UP000265140    UP000034805    UP000002358    UP000051836    UP000016666    UP000265180    UP000031443    UP000264800    UP000257200    UP000192220    UP000265200    UP000001038    UP000261620   

PRIDE

H9J733   

Pfam

PF00505   HMG_box

Interpro

IPR036910   HMG_box_dom_sf        + More
IPR009071   HMG_box_dom       

SUPFAM

SSF47095   SSF47095       

Gene 3D

1.10.30.10    

ProteinModelPortal

H9J733   A0A2H1VL89   A0A3S2NWR1   S4Q016   A0A212FPT5   A0A194PWR9   + More
A0A194QU41   A0A0L7LGJ7   A0A2P8Z7C0   A0A2J7Q1Q4   A0A067QWM6   A0A087ZS20   A0A026WUJ9   A0A0L7RCI5   A0A2A3E8C8   A0A0N0U728   A0A0T6BEV8   A0A091TPM0   A0A2I0M6W7   D6WST5   A0A091PFI5   A0A091QN12   A0A093HMP6   A0A091L6L4   A0A093T4E7   A0A093FJA3   A0A091GL32   A0A091PQQ4   A0A091NZ74   A0A093FDE3   A0A091HFY5   A0A091K8K3   A0A091WKJ8   A0A093J0S1   A3KNQ1   A0A0F7ZDN9   A0A091F998   J3S8X3   A0A1W7RGS8   A0A310SB53   Q5ZKF4   A0A3L8S3E5   A0A1W5B6S1   A0A0K8S0I9   A0A1W5B5S8   H0YZS2   A0A098LZN7   W5NUL0   A0A212CSS4   Q0VCL5   U3K870   A0A384BE40   A0A091JU00   A0A341CUQ1   A0A340Y6B2   A0A2Y9EXC1   A0A2U4CJW0   R0JK63   A0A2D4FMB5   F1SJ88   A0A2Y9P151   A0A218U9U5   G1SPD6   A0A2D4PFJ7   G1MVZ9   A0A1D5PL23   A0A2H6N4Y8   T1DBE6   A0A093PH96   A0A087R180   A0A093PAZ2   A0A091HXN2   A0A091TUY5   A0A3B3SN35   U3FWV0   A0A1A8GRH1   A0A232FE35   A0A094KWE2   H9GHR1   A0A3P8Z6Z3   A0A1A8R862   A0A1A8RCJ4   A0A1A8IYX6   A0A1A8C0N6   A0A1A8AXT3   A0A0P7V069   K7IPT5   A0A0Q3TCF0   U3J7K5   A0A3P9LHQ1   M7BHP5   A0A3Q3APJ7   A0A3Q1FNN4   A0A2I4CU74   A0A293N3F2   A0A3P9I1C3   H2L8Q2   A0A3Q3VZL5  

PDB

2CRJ     E-value=2.69545e-18,     Score=225

KEGG

101743611    no KO assigned | (RefSeq) high mobility group protein 20A

GO

GO:0005634   GO:0003677   GO:0000122   GO:0042802   GO:0045665   GO:0046982   GO:0033234  

Subcellular location

Nucleus  

Length:

362

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00544

Exp number, first 60 AAs:

0.00044

Total prob of N-in:

0.00935

outside

1  -  362

 

 

Pi

24.263758

Theta

37.696203

Tajima's D

-0.993234

CLR

170.976238

CSRT

0.142842857857107

Interpretation

Uncertain