Silkworm Genome Informatics Database

Gene

KWMTBOMO04590 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005486

Annotation

Histone_RNA_hairpin-binding_protein_[Operophtera_brumata]

Location

Bomo_Chr8(+):10449330-10452953 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.587

CDS

ATGGCAAGCTGTTATAAAAAAAGGAGACTTGAACATGAAGAATCTGAGGACAAGATTACAGTTACAGATAAATCCATGAACTCTATAACTCACACTGGAGAAGACTCAAAAAACAGAAAGAAGCTCAAATCAGATGTTGAAAATGAAGGAAATCTTGTAGTTAAATTGGTCGAATACGAGACTGATCCTGAAGTACTACAGAGGCGCCAAAAGCAAATTGATTATGGAAAAAACACAGTTGGGTATCAAAATTATGTTCAACAAATTCCACTAAACAAAAGGACTAAAGAACTACCAAAGACTCCAGATAAATACTTGAAATATAGTAGGCGGTCATGGGATATGTTAATAAAGCTTTGGAGAAAAAATCTACATGAATTCGATCCCAACTTTGGAGAAGTAAAGAAAGAATGCAATGATGCTAATAAGAAAGTTAATGATGATGACTCTTCCGATTAG

Protein

MASCYKKRRLEHEESEDKITVTDKSMNSITHTGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTPDKYLKYSRRSWDMLIKLWRKNLHEFDPNFGEVKKECNDANKKVNDDDSSD

Uniprot

H9J7J4 S4PCY5 A0A2H1VLA4 A0A224XKJ1 A0A069DRC6 A0A0A1WLJ0 + More
A0A0K8V3S3 A0A3P8SKS5 A0A0K8VT44 A0A1W4X1C9

Pubmed

19121390 23622113 26334808 25830018

EMBL

BABH01013932 GAIX01003891 JAA88669.1 ODYU01003194 SOQ41620.1 GFTR01004842 + More
JAW11584.1 GBGD01002266 JAC86623.1 GBXI01014922 JAC99369.1 GDHF01018742 JAI33572.1 GDHF01010291 JAI42023.1

Proteomes

UP000005204 UP000265080 UP000192223

PRIDE

H9J7J4

Pfam

PF15247 SLBP_RNA_bind

Interpro

IPR029344   SLBP_RNA_bind        + More
IPR026502   SLBP1/SLBP2
IPR038294   SLBP_RNA_bind_sf

Gene 3D

1.10.8.1120

ProteinModelPortal

H9J7J4 S4PCY5 A0A2H1VLA4 A0A224XKJ1 A0A069DRC6 A0A0A1WLJ0 + More
A0A0K8V3S3 A0A3P8SKS5 A0A0K8VT44 A0A1W4X1C9

PDB

4TUX E-value=2.98248e-18, Score=219

KEGG

101743855 K18710 histone RNA hairpin-binding protein | (RefSeq) histone RNA hairpin-binding protein

GO

GO:0003729 GO:0003723 GO:0006886 GO:0008536 GO:0020037 GO:0016491 GO:0007165 GO:0015031 GO:0016020 GO:0016742 GO:0003824

PANTHER

PTHR17408

Length:

152

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.54392

inside

1 - 152

Pi

227.477877

Theta

179.346211

Tajima's D

1.155462

CLR

0.008886

CSRT

0.705664716764162

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics