Gene

KWMTBOMO04586

Pre Gene Modal

BGIBMGA005484

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_condensin_complex_subunit_1_[Bombyx_mori]

Location

Bomo_Chr8(+):10404400-10410274      View in EpiBrowser

Full name

Condensin complex subunit 1      

Location in the cell

Nuclear   Reliability : 3.707

CDS

ATGATTACGTTACTCAAAAGATCGAAAAACGTATCTTTGAGAACCAATTTGACAATTGCCTTCGCCGACCTCACTTTGAGATTCCCGAATCTTACGCAGCCGTGGACGCATCACATTTATCACATTCTAAGCGACGAGGAGCTAGAAGTCCGTCAGTGTGCAGTGAAGATGCTGTCGTTTCTGGTCCTGCACGAGATGGTCCGCGTGAAGGGACAGATAGCAGACATGGCGCTGTGCTGCGCGGACGCGGACGCTAAAGTGGCGAGTATGACGCGCCTCTTCTTCAAACAGCTTTCACAAAAGGGAAACGCCCTATACAACGTCATGCCCGATATTATATCAAGACTGAGCGATCCGGATTTGAATGTACCTGAAGAGCAATACAGAATTATTATGAAATATATAACTTCACTAATCCAAAAAGACAGACAAATGGAGGCACTAGTAGAGAAATTATGCCAAAGATTCAAATTATCAACAGAAGAAAGACAGTGGCGAGACTTAGCTTATTGTCTCTCTCTGTTTACATACAACGAAAGGTCACTAAGGAAACTCATTGAAAATCTCGACTGTTACAAAGATAAATTATATTGTCAAGGAGTGATGGAGTCTTTCAACACAATTATGAATAACGCTTCCAAAATGGCCAAGAACGACATTAAGGCTTTGGTAACCGAACTGGGAGATAAAATAGAAGAAGGCTTTGCGGTTCGCGCTGAGGAAGGTAATTGTGAAGGAACCACTGAAGGCAGTGGCGACACTGACAAGAAGGCGACGGGTCCGCGCGCCACTCCCAGACGGCGGGCTGCGCCCCGAAGGAACCGCAGGAGATCTTCATCCAGTGCAGATGAGAATGAACCTCCCAGCAACGTCGAAACCCCAGTGTCGACTAGAAAATCTAATCGGAAAGCAGCAAATAAACAAAAGATTGTAAATGATTCAGAAGATTCAGATGACGATGACTTTCAGGATAAAGAGGAAGTGTTTAAAAAACCAGTGAGAAAAGCAACGCGACGAAGAAAGTTATAA

Protein

MITLLKRSKNVSLRTNLTIAFADLTLRFPNLTQPWTHHIYHILSDEELEVRQCAVKMLSFLVLHEMVRVKGQIADMALCCADADAKVASMTRLFFKQLSQKGNALYNVMPDIISRLSDPDLNVPEEQYRIIMKYITSLIQKDRQMEALVEKLCQRFKLSTEERQWRDLAYCLSLFTYNERSLRKLIENLDCYKDKLYCQGVMESFNTIMNNASKMAKNDIKALVTELGDKIEEGFAVRAEEGNCEGTTEGSGDTDKKATGPRATPRRRAAPRRNRRRSSSSADENEPPSNVETPVSTRKSNRKAANKQKIVNDSEDSDDDDFQDKEEVFKKPVRKATRRRKL

Description

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Similarity

Belongs to the CND1 (condensin subunit 1) family.

Uniprot

H9J7J2   S4NYG7   A0A2H1W582   A0A3S2NV77   A0A212EL47   A0A194QSP9   + More
A0A194PQ56   A0A0L7KRA2   A0A1I8PTP0   A0A1I8PTS8   A0A1I8MCN6   W8CBD0   A0A182MHJ2   A0A182VSA9   A0A182HJT6   Q7QDI4   A0A182XK54   A0A182TYB1   A0A182VN55   A0A182TJV7   A0A1Q3EW18   A0A1Q3EW06   A0A182JZF4   A0A182H1V1   A0A182GLG7   A0A1A9WR38   Q17CA8   A0A1S4F873   A0A182R829   B4PPM7   A0A1B0AGG3   A0A182PMX8   A0A182IV77   A0A1A9V391   A0A1A9XFG3   Q9VAJ1   B3P5F4   A0A1B0BAP1   A0A2M4CNX8   A0A182NKW6   B4HZC2   B4R065   A0A182F8L8   B4KND6   W5JSJ6   B4LMA5   A0A067RAS5   B4J6N9   A0A336LTZ0   T2MD05   A0A1W4UPK9   A7SNA1   A0A0R3NXR9   K1R247   B5DIE4   B4G9A8   A0A182KX05   A0A3B0K6E9   A0A0M5J6X5   R7UQL7   B3MVT7   W4Y6G0   A0A2P2I0B3   E9G738   B0W3E5   A0A0P5K6P8   A0A0P6D2U0   A0A0N8BYD1   A0A0P5F9B2   A0A0P5BBE8   A0A0P5MKM6  

Pubmed

19121390    23622113    22118469    26354079    26227816    25315136    + More
24495485    12364791    14747013    17210077    26483478    17510324    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20920257    23761445    24845553    24065732    17615350    15632085    22992520    20966253    23254933    21292972   

EMBL

BABH01013924    BABH01013925    GAIX01008599    JAA83961.1    ODYU01006382    SOQ48183.1    + More
RSAL01000163    RVE45375.1    AGBW02014132    OWR42220.1    KQ461154    KPJ08507.1    KQ459595    KPI95576.1    JTDY01006991    KOB65544.1    GAMC01004931    JAC01625.1    AXCM01001279    APCN01002209    AAAB01008851    EAA07299.5    GFDL01015541    JAV19504.1    GFDL01015548    JAV19497.1    JXUM01023258    KQ560656    KXJ81410.1    JXUM01071935    KQ562693    KXJ75324.1    CH477310    EAT43967.1    CM000160    EDW98277.1    AE014297    AY122183    AAF56915.1    AAM52695.1    CH954182    EDV53204.1    JXJN01011087    GGFL01002858    MBW67036.1    CH480819    EDW53379.1    CM000364    EDX14871.1    CH933808    EDW09989.1    ADMH02000563    ETN65880.1    CH940648    EDW60983.1    KK852817    KDR15738.1    CH916367    EDW00942.1    UFQT01000109    SSX20143.1    HAAD01003777    CDG70009.1    DS469718    EDO34797.1    CH379060    KRT04159.1    JH817402    EKC37559.1    EDY70085.1    CH479180    EDW28938.1    OUUW01000004    SPP79048.1    CP012524    ALC40848.1    AMQN01001095    KB299137    ELU08403.1    CH902625    EDV35082.1    AAGJ04101735    AAGJ04101736    AAGJ04101737    AAGJ04101738    AAGJ04101739    AAGJ04101740    IACF01001799    LAB67478.1    GL732534    EFX84401.1    DS231831    EDS31288.1    GDIQ01188335    GDIQ01188334    JAK63391.1    GDIQ01085978    JAN08759.1    GDIQ01132811    JAL18915.1    GDIQ01258167    JAJ93557.1    GDIP01186823    LRGB01002019    JAJ36579.1    KZS09603.1    GDIQ01157948    JAK93777.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000095300    UP000095301    UP000075883    UP000075920    UP000075840    UP000007062    UP000076407    UP000075902    UP000075903    UP000075881    UP000069940    UP000249989    UP000091820    UP000008820    UP000075900    UP000002282    UP000092445    UP000075885    UP000075880    UP000078200    UP000092443    UP000000803    UP000008711    UP000092460    UP000075884    UP000001292    UP000000304    UP000069272    UP000009192    UP000000673    UP000008792    UP000027135    UP000001070    UP000192221    UP000001593    UP000001819    UP000005408    UP000008744    UP000075882    UP000268350    UP000092553    UP000014760    UP000007801    UP000007110    UP000000305    UP000002320    UP000076858   

PRIDE

H9J7J2   

Pfam

PF12717   Cnd1        + More
PF12922   Cnd1_N
PF00293   NUDIX
PF01712   dNK
PF12765   Cohesin_HEAT
PF03859   CG-1
PF01833   TIG

Interpro

IPR016024   ARM-type_fold        + More
IPR032682   Cnd1_C       
IPR026971   CND1/NCAPD3       
IPR007673   Condensin_cplx_su1       
IPR015797   NUDIX_hydrolase-like_dom_sf       
IPR011989   ARM-like       
IPR000086   NUDIX_hydrolase_dom       
IPR024324   Condensin_cplx_su1_N       
IPR027417   P-loop_NTPase       
IPR031314   DNK_dom       
IPR001313   Pumilio_RNA-bd_rpt       
IPR026003   Cohesin_HEAT       
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR000048   IQ_motif_EF-hand-BS       
IPR005559   CG-1_dom       
IPR002909   IPT_dom       
IPR014756   Ig_E-set       
IPR013783   Ig-like_fold       

SUPFAM

SSF48371   SSF48371        + More
SSF55811   SSF55811       
SSF52540   SSF52540       
SSF48403   SSF48403       
SSF81296   SSF81296       

Gene 3D

1.25.10.10     1.25.40.20     2.60.40.10    

CDD

cd00204  ANK

ProteinModelPortal

H9J7J2   S4NYG7   A0A2H1W582   A0A3S2NV77   A0A212EL47   A0A194QSP9   + More
A0A194PQ56   A0A0L7KRA2   A0A1I8PTP0   A0A1I8PTS8   A0A1I8MCN6   W8CBD0   A0A182MHJ2   A0A182VSA9   A0A182HJT6   Q7QDI4   A0A182XK54   A0A182TYB1   A0A182VN55   A0A182TJV7   A0A1Q3EW18   A0A1Q3EW06   A0A182JZF4   A0A182H1V1   A0A182GLG7   A0A1A9WR38   Q17CA8   A0A1S4F873   A0A182R829   B4PPM7   A0A1B0AGG3   A0A182PMX8   A0A182IV77   A0A1A9V391   A0A1A9XFG3   Q9VAJ1   B3P5F4   A0A1B0BAP1   A0A2M4CNX8   A0A182NKW6   B4HZC2   B4R065   A0A182F8L8   B4KND6   W5JSJ6   B4LMA5   A0A067RAS5   B4J6N9   A0A336LTZ0   T2MD05   A0A1W4UPK9   A7SNA1   A0A0R3NXR9   K1R247   B5DIE4   B4G9A8   A0A182KX05   A0A3B0K6E9   A0A0M5J6X5   R7UQL7   B3MVT7   W4Y6G0   A0A2P2I0B3   E9G738   B0W3E5   A0A0P5K6P8   A0A0P6D2U0   A0A0N8BYD1   A0A0P5F9B2   A0A0P5BBE8   A0A0P5MKM6  

KEGG

101735397    K06677 condensin complex subunit 1 | (RefSeq) condensin complex subunit 1

GO

GO:0007076   GO:0005634   GO:0016787   GO:0051301   GO:0007049   GO:0030261   GO:0010032   GO:0000799   GO:0042393   GO:0003682   GO:0051304   GO:0000779   GO:0000785   GO:0000796   GO:0005737   GO:0000070   GO:0007419   GO:0003723   GO:0003677   GO:0005488   GO:0016021   GO:0020037   GO:0016491   GO:0007165   GO:0015031   GO:0016020   GO:0016742   GO:0003824  

PANTHER

PTHR14222   PTHR14222:SF2  

Length:

342

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01496

Exp number, first 60 AAs:

0.01433

Total prob of N-in:

0.13850

outside

1  -  342

 

 

Pi

177.219062

Theta

169.352719

Tajima's D

0.415397

CLR

0.039216

CSRT

0.489825508724564

Interpretation

Uncertain