Gene

KWMTBOMO04585

Pre Gene Modal

BGIBMGA005483

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_condensin_complex_subunit_1_[Bombyx_mori]

Location

Bomo_Chr8(+):10391210-10403021      View in EpiBrowser

Full name

Condensin complex subunit 1      

Alternative Name

Chromosome assembly protein XCAP-D2
Chromosome condensation-related SMC-associated protein 1
Chromosome-associated protein D2
Eg7
Non-SMC condensin I complex subunit D2

Location in the cell

Cytoplasmic   Reliability : 2.451

CDS

ATGAGTCATTTTGAATTTGCTATTCCCTTACAAAAGGACGAGTTATTAGAATCCCATGCAGGACAATATCACGTCGAGGATGTAGTACAACCGCGACTCATGTTGTCGAAATTACAAGATGGAGCCCGTGCTTATAATTCTGTAGGAGTTGATTATATACTTGAACATTTTGATACATATTTTTCAATAATTGTACATGGAGTGAAACTGGAGTGGAATGTCATCAACAAAGGCTTTGACCACATAATAAGGGCTGCTAAGAATTTATGCAGTCATTTAGAATTAATACTCCAGGAACAAGAATTGGATGTTGATGTGAGGGTTAAAAATCTAAATATTACTAAAATGATAATGTACCTCTTCACCCAAATAATGAAAACAAAAGACACCAAATTGGCTGCTGATAATTCCACTAAGCTAACATTGGGCAAGAAAGGTAAGAAGGCAACAGAAGAAGAAGAATTATGTGGTTGGACAGAATCTGACAAGCAAGCGGCAATGCTCACTCTGTACTTGGTTACACAACAACCATTATCAAGATTGTGGGACCCTCCATTGGCTGAAGATAATTTTGTTTCAATGATAGCAGATCCTTGCTACAAAGCACTAGAAGAACAAATGATCAAAAACAAAGCTATAAGAGACACTGTGTTCCAAGTTCTAGGAGTCCTTATAAAGAAATATAACCATGGGACATCATGTCTCATTAAACTCGTCCAGATACTTCAAATGGTTGAGCATGCTGTGTCACCAATATGTGCTGGAGTAGTACAGTTGACAAAAGAATTTGGACTTGGTACTTTTGGGCCACAAATGGTTCGTGAAATAGCAGAAGCTCTGGCGTCAACTGAGGAAGAAACAACAGGCACAGAGCAGAGTGCAGCTAGGAACTGTGGGGCTTTCTTATTGGAACTCACCAAAGAACTACCTAAAGAAATGGCCAATGCAATTGCGACATTACAACCATATTTGGAGAGCGATGAGTCATACACGCTCCGTATCAGCGTGCTCGGGATGATGTGCGAGGTGCTGAGCGTGGAGTTGCGCGGCGAGGGCTTGTCGGACGCGCAGCGCATACAGCGCGACGACTTCCTCGACGATTTGTATGAGCACATACACGATCTATCCGCTTATGTACGCCATAAGGTGCTCCAATTCTGGTGTCGTTTGCAACGGGAGAACTGTGTCCCGGTAAACCGACAACGTACCGTACTCGAACGCGCCATTGGACGACTCAAGGACAAGGCGGCCTTAGTGCGTAAAGCTGCCATACAATTATTGAAGATATTCTTGGAATGCAACCCGTTTTCTGCACAGTTAAAATTGGATATTTTGGAAGAGCAACTTCAAACAGAACAGAAAATCCTCGGCGATCTCCAAAAGAAGCTGAATCCGGGCCCCGACCCTGAACTTGTCAAGAAATGGACGGAAATCGAAGACGACGTGACGAAGGCTATCAAAAAAAACATAGACGTACTAACACAAGACGAACCGGACCTCTCACAAGCGTCCTTAGATAATTTATATGAAGCAATTCGTAAACACTTGCGCGAGAAGAATTATTTTAAAGCGTATCTTATTGTAAAGCATACGGAGAGACAATACCCGGACGCGAAACTGCTTAGGTGCGATATGGAGAAAAGCGATCAGATTAATTACTTCGTAGCTCTGCTCGGCAACATATTCGTTATACCCGATGTAAGAACGTCCGCCACGCTTACACAACAATGTGACAACGAATTAGCGTTACACAAACGATTAGAAGAGAAAGAGAGTATAGTCGCGTTTCTACAAGAGTCCGTACACTTCAGTCGGATGGTTTCAGAAGCTGTGCCCATGATAAACTCTTTGTTGATGTCAAAACAAGCGGGTGATGTGAATGAAGCGATCGACTTCTTCACTACAGCTCATCATTTCAATATAGAATCGGCCAAAATGGGCGTGGCCAACATGCTGATGCTTGTGTGGTCACCCGATCAGGACAAACGTGAAGCCGTCGAACGAGCTTATAGAGAAATGTATTTAGAATGTGATAATAAAGCAGAACGCGCCCGGGCGTTCATCATAGCTAAGAATTTGACATCTCTGATGCTGCACATCGACTGCGGGAGTGCACTGGCCCTGGAACACCTCGTCGATAAGTGGGTTGAGAAGGGGGACATCAATCCGGCGGTCATACAGGTACTGTGGGAGATGTTCCTAAAAAAAATTGACGGAACAACCGACACGGACAGCTACGCCGCAATATCTCTACTCGTAATGATCGCCAAAGCAAAACCCTCCGTGACTTTAGCCAACTTAGAAGTCATACAAGCTCACGGACTGACCGGCGATTATAACACAAGGAAACTGAGCGCCCAATTACTTCTGCCGTTGGTCAAGAAAAGTCAAAGATACCCCGCAGACCATTCAATATTCACAAGCTTATTCGACAGTTTGATGGAAGCTTTCAGCAAATTAAATGACTTCGCATCGTTCGCTTCAAACGTCATAGATGCTGTATACGCTATATGTGACACGCCCGAAATTATTTGTTCTAAGATATTAGCAGAAATGTACAGGCGCATTGAAGAAATGATGGTTAAGAATTGCGACAATGAGGAGGAGGCAGCGTACCCCACGGAGTTGTTGACGCGTTTCGTGTTTACATTAGGCCATGTAGCACTCCAGCAACTCATTTACTTGGACATCAGTGTATACAGTGAACTCAGGAGAAGAAACCAGGTTCGAGAAGAACGCAAAGCTGAAGAGAAACGAAAGAAAAAAGCGGGAACGTTCGCGACACCGGCTCGACGCGGCCGGGTCGATGACCTCCGACGACAAACACTCATGAACGTCAGTAACGCCTCGGCCTCCTCGCGGGCGCAGCGGTCCGCCAGCGTCGCATCCAACAAGGGAGCCTCGGTAAGCTTCCGTCGCTGTCACCAAGACACATCTGCAGTGATACCTATATTAATCTTAACACCACAAACATTGGCCAAATTGTTCACTTAA

Protein

MSHFEFAIPLQKDELLESHAGQYHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHIIRAAKNLCSHLELILQEQELDVDVRVKNLNITKMIMYLFTQIMKTKDTKLAADNSTKLTLGKKGKKATEEEELCGWTESDKQAAMLTLYLVTQQPLSRLWDPPLAEDNFVSMIADPCYKALEEQMIKNKAIRDTVFQVLGVLIKKYNHGTSCLIKLVQILQMVEHAVSPICAGVVQLTKEFGLGTFGPQMVREIAEALASTEEETTGTEQSAARNCGAFLLELTKELPKEMANAIATLQPYLESDESYTLRISVLGMMCEVLSVELRGEGLSDAQRIQRDDFLDDLYEHIHDLSAYVRHKVLQFWCRLQRENCVPVNRQRTVLERAIGRLKDKAALVRKAAIQLLKIFLECNPFSAQLKLDILEEQLQTEQKILGDLQKKLNPGPDPELVKKWTEIEDDVTKAIKKNIDVLTQDEPDLSQASLDNLYEAIRKHLREKNYFKAYLIVKHTERQYPDAKLLRCDMEKSDQINYFVALLGNIFVIPDVRTSATLTQQCDNELALHKRLEEKESIVAFLQESVHFSRMVSEAVPMINSLLMSKQAGDVNEAIDFFTTAHHFNIESAKMGVANMLMLVWSPDQDKREAVERAYREMYLECDNKAERARAFIIAKNLTSLMLHIDCGSALALEHLVDKWVEKGDINPAVIQVLWEMFLKKIDGTTDTDSYAAISLLVMIAKAKPSVTLANLEVIQAHGLTGDYNTRKLSAQLLLPLVKKSQRYPADHSIFTSLFDSLMEAFSKLNDFASFASNVIDAVYAICDTPEIICSKILAEMYRRIEEMMVKNCDNEEEAAYPTELLTRFVFTLGHVALQQLIYLDISVYSELRRRNQVREERKAEEKRKKKAGTFATPARRGRVDDLRRQTLMNVSNASASSRAQRSASVASNKGASVSFRRCHQDTSAVIPILILTPQTLAKLFT

Description

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. May target the condensin complex to DNA via its C-terminal domain.

Subunit

Component of the condensin complex, which contains the XCAP-E/SMC2 and XCAP-C/SMC4 heterodimer, and three non SMC subunits that probably regulate the complex: XCAP-H/NCAPH, XCAP-D2/NCAPD2 and XCAP-G/NCAPG.

Similarity

Belongs to the CND1 (condensin subunit 1) family.

Keywords

Cell cycle   Cell division   Chromosome   Cytoplasm   DNA condensation   Mitosis   Nucleus   Phosphoprotein   Repeat  

Feature

chain  Condensin complex subunit 1

Uniprot

H9J7J1   A0A2H1W582   A0A3S2NV77   A0A194PQ56   A0A212EL47   A0A067RAS5   + More
A0A182PMX8   Q17CA8   A0A182MHJ2   A0A182H1V1   A0A1S4F873   W5JSJ6   A0A0P4WFY0   A0A182F8L8   A0A182R829   A0A182TJV7   A0A182NKW6   A0A182JZF4   A0A182XK54   A0A182VN55   A0A182QXQ5   Q7QDI4   A0A1Q3EW18   A0A1Q3EW06   A0A182KX05   A0A182VSA9   A0A182HJT6   B0W3E5   A0A182GLG7   A0A182YRF9   A0A182IV77   A0A1B6LJW8   A0A1B6GYV1   A7SNA1   A0A026VWS5   A0A3L8DB55   A0A034VN43   W8CBD0   A0A0A1X9W3   A0A151K3X1   A0A195BX76   A0A1I8MCN6   A0A158P3N4   A0A0K8WCI8   A0A336LTZ0   A0A195CTJ5   B4KND6   E9IK76   A0A1S3CYA1   F4WYL5   A0A182TYB1   A0A1B0AGG3   A0A1A9WR38   A0A0L0BY30   A0A151XG44   A0A3B0K6E9   A0A1J1HW51   A0A1I8PTS8   R7UQL7   A0A2T7PU40   A0A1A9XFG3   A0A1S3JXF9   A0A1S3JXH4   A0A195F052   K1R247   A0A2A3E3S3   A0A1B0BAP1   B4LMA5   A0A1A9V391   B4G9A8   A0A0P4Y420   A0A0N8C574   A0A0N8BUN8   B5DIE4   A0A0P5P2H9   B4J6N9   A0A0P5EMU1   B3MVT7   A0A0P5BBE8   A0A0P5F9B2   A0A0P5MKM6   A0A0P6BUR4   A0A0M9A6A8   A0A1B0GH99   E2ASE3   B4MR71   A0A1B0G1H4   A0A0M5J6X5   E2BG07   A0A2P2I0B3   F7ESD3   A0A1W4UPK9   V3ZZM9   Q9VAJ1   B4R065   Q9YHY6   E0VIH0  

Pubmed

19121390    26354079    22118469    24845553    17510324    26483478    + More
20920257    23761445    12364791    14747013    17210077    20966253    25244985    17615350    24508170    30249741    25348373    24495485    25830018    25315136    21347285    17994087    21282665    21719571    26108605    23254933    22992520    15632085    20798317    20431018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    9774278    9852142    9160743    10428035    20566863   

EMBL

BABH01013922    BABH01013923    ODYU01006382    SOQ48183.1    RSAL01000163    RVE45375.1    + More
KQ459595    KPI95576.1    AGBW02014132    OWR42220.1    KK852817    KDR15738.1    CH477310    EAT43967.1    AXCM01001279    JXUM01023258    KQ560656    KXJ81410.1    ADMH02000563    ETN65880.1    GDRN01065886    JAI64621.1    AXCN02000110    AAAB01008851    EAA07299.5    GFDL01015541    JAV19504.1    GFDL01015548    JAV19497.1    APCN01002209    DS231831    EDS31288.1    JXUM01071935    KQ562693    KXJ75324.1    GEBQ01015976    JAT24001.1    GECZ01002180    JAS67589.1    DS469718    EDO34797.1    KK107670    EZA48192.1    QOIP01000010    RLU17541.1    GAKP01014241    JAC44711.1    GAMC01004931    JAC01625.1    GBXI01012427    GBXI01006410    JAD01865.1    JAD07882.1    LKEY01014923    KYN50528.1    KQ976394    KYM93182.1    ADTU01008282    GDHF01003416    JAI48898.1    UFQT01000109    SSX20143.1    KQ977304    KYN03812.1    CH933808    EDW09989.1    GL763924    EFZ19069.1    GL888453    EGI60703.1    JRES01001254    KNC24194.1    KQ982174    KYQ59354.1    OUUW01000004    SPP79048.1    CVRI01000021    CRK91778.1    AMQN01001095    KB299137    ELU08403.1    PZQS01000002    PVD36929.1    KQ981880    KYN33950.1    JH817402    EKC37559.1    KZ288425    PBC25942.1    JXJN01011087    CH940648    EDW60983.1    CH479180    EDW28938.1    GDIP01236612    JAI86789.1    GDIQ01113667    JAL38059.1    GDIQ01143155    JAL08571.1    CH379060    EDY70085.1    GDIQ01144602    JAL07124.1    CH916367    EDW00942.1    GDIP01144114    JAJ79288.1    CH902625    EDV35082.1    GDIP01186823    LRGB01002019    JAJ36579.1    KZS09603.1    GDIQ01258167    JAJ93557.1    GDIQ01157948    JAK93777.1    GDIP01010621    JAM93094.1    KQ435726    KOX78117.1    AJWK01004110    AJWK01004111    GL442298    EFN63609.1    CH963849    EDW74610.1    CCAG010005392    CP012524    ALC40848.1    GL448096    EFN85409.1    IACF01001799    LAB67478.1    AAMC01117823    AAMC01117824    KB202518    ESO89837.1    AE014297    AY122183    AAF56915.1    AAM52695.1    CM000364    EDX14871.1    AF067969    AF072717    DS235199    EEB13176.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000007151    UP000027135    UP000075885    + More
UP000008820    UP000075883    UP000069940    UP000249989    UP000000673    UP000069272    UP000075900    UP000075902    UP000075884    UP000075881    UP000076407    UP000075903    UP000075886    UP000007062    UP000075882    UP000075920    UP000075840    UP000002320    UP000076408    UP000075880    UP000001593    UP000053097    UP000279307    UP000078492    UP000078540    UP000095301    UP000005205    UP000078542    UP000009192    UP000079169    UP000007755    UP000092445    UP000091820    UP000037069    UP000075809    UP000268350    UP000183832    UP000095300    UP000014760    UP000245119    UP000092443    UP000085678    UP000078541    UP000005408    UP000242457    UP000092460    UP000008792    UP000078200    UP000008744    UP000001819    UP000001070    UP000007801    UP000076858    UP000053105    UP000092461    UP000000311    UP000007798    UP000092444    UP000092553    UP000008237    UP000008143    UP000192221    UP000030746    UP000000803    UP000000304    UP000009046   

PRIDE

H9J7J1    Q9YHY6   

Pfam

PF12922   Cnd1_N        + More
PF12717   Cnd1
PF00293   NUDIX
PF01712   dNK
PF12765   Cohesin_HEAT
PF03859   CG-1
PF01833   TIG

Interpro

IPR026971   CND1/NCAPD3        + More
IPR007673   Condensin_cplx_su1       
IPR024324   Condensin_cplx_su1_N       
IPR016024   ARM-type_fold       
IPR015797   NUDIX_hydrolase-like_dom_sf       
IPR011989   ARM-like       
IPR000086   NUDIX_hydrolase_dom       
IPR032682   Cnd1_C       
IPR027417   P-loop_NTPase       
IPR031314   DNK_dom       
IPR026003   Cohesin_HEAT       
IPR000626   Ubiquitin_dom       
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR000048   IQ_motif_EF-hand-BS       
IPR005559   CG-1_dom       
IPR002909   IPT_dom       
IPR014756   Ig_E-set       
IPR013783   Ig-like_fold       
IPR001313   Pumilio_RNA-bd_rpt       

SUPFAM

SSF48371   SSF48371        + More
SSF55811   SSF55811       
SSF52540   SSF52540       
SSF48403   SSF48403       
SSF81296   SSF81296       

Gene 3D

1.25.10.10     1.25.40.20     2.60.40.10    

CDD

cd00204  ANK

ProteinModelPortal

H9J7J1   A0A2H1W582   A0A3S2NV77   A0A194PQ56   A0A212EL47   A0A067RAS5   + More
A0A182PMX8   Q17CA8   A0A182MHJ2   A0A182H1V1   A0A1S4F873   W5JSJ6   A0A0P4WFY0   A0A182F8L8   A0A182R829   A0A182TJV7   A0A182NKW6   A0A182JZF4   A0A182XK54   A0A182VN55   A0A182QXQ5   Q7QDI4   A0A1Q3EW18   A0A1Q3EW06   A0A182KX05   A0A182VSA9   A0A182HJT6   B0W3E5   A0A182GLG7   A0A182YRF9   A0A182IV77   A0A1B6LJW8   A0A1B6GYV1   A7SNA1   A0A026VWS5   A0A3L8DB55   A0A034VN43   W8CBD0   A0A0A1X9W3   A0A151K3X1   A0A195BX76   A0A1I8MCN6   A0A158P3N4   A0A0K8WCI8   A0A336LTZ0   A0A195CTJ5   B4KND6   E9IK76   A0A1S3CYA1   F4WYL5   A0A182TYB1   A0A1B0AGG3   A0A1A9WR38   A0A0L0BY30   A0A151XG44   A0A3B0K6E9   A0A1J1HW51   A0A1I8PTS8   R7UQL7   A0A2T7PU40   A0A1A9XFG3   A0A1S3JXF9   A0A1S3JXH4   A0A195F052   K1R247   A0A2A3E3S3   A0A1B0BAP1   B4LMA5   A0A1A9V391   B4G9A8   A0A0P4Y420   A0A0N8C574   A0A0N8BUN8   B5DIE4   A0A0P5P2H9   B4J6N9   A0A0P5EMU1   B3MVT7   A0A0P5BBE8   A0A0P5F9B2   A0A0P5MKM6   A0A0P6BUR4   A0A0M9A6A8   A0A1B0GH99   E2ASE3   B4MR71   A0A1B0G1H4   A0A0M5J6X5   E2BG07   A0A2P2I0B3   F7ESD3   A0A1W4UPK9   V3ZZM9   Q9VAJ1   B4R065   Q9YHY6   E0VIH0  

KEGG

101735397    K06677 condensin complex subunit 1 | (RefSeq) condensin complex subunit 1

GO

GO:0007076   GO:0005634   GO:0016787   GO:0051301   GO:0007049   GO:0030261   GO:0010032   GO:0000799   GO:0042393   GO:0003682   GO:0051304   GO:0000779   GO:0003677   GO:0003723   GO:0016021   GO:0005737   GO:0000796   GO:0000785   GO:0000070   GO:0007419   GO:0005829   GO:0005694   GO:0005488   GO:0020037   GO:0016491   GO:0007165   GO:0015031   GO:0016020   GO:0016742   GO:0003824  

PANTHER

PTHR14222:SF2   PTHR14222  

Subcellular location

Nucleus  
Cytoplasm  
Chromosome  

Length:

997

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15327

Exp number, first 60 AAs:

0.00025

Total prob of N-in:

0.00004

outside

1  -  997

 

 

Pi

169.82381

Theta

175.656834

Tajima's D

-0.449038

CLR

0.586785

CSRT

0.247937603119844

Interpretation

Uncertain