Gene

KWMTBOMO04584  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005328

Annotation

translocon-associated_protein_gamma_isoform_1_[Bombyx_mori]

Location

Bomo_Chr8(-):10387964-10389599      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.513

CDS

ATGTCTGGAAAGAACAACAAAGCTTTTACAAAAGAAGAAGAGTTATTGTTGCAAGATTTTAGCCGGAATGTGTCCACAAAATCGTCTGCTCTCTTTTACGGGAACGCTTTTATTGTTTCAGCAATTCCAATTTGGTTGTTCTGGAGGGTACATTCATTGGAAATAAGCACCGCAATTATTTGGTTTATCCTAGTAACGGCAGCTAGCACCTGGTTGCTGGCTCTTGCCTACCGTAACACTAAGTTCCAGTTGAAGCACCGTGTTGCTGTGCGCAGGGAGGATGCTGTTGCCCGTGAAATGTCCAGGAAGCTTGCTGATGATAAAAAAATGAGCAGAAAAGAAAAGGACGAAAGAATCTTGTGGAAAAAGAATGAGGTGGCAGATTATGAAGCTACCACATACTCAATTTTCTACAATAACGCACTTTTCCTGACTATTGTCATCTTGAGCAGTTTCTACATTCTGCGTACATTCACACCTACAGTTAATTACATTGTGTCTCTCACGGCTGCATCTGGACTTCTTGCTCTACTCTCCACAGGAACCAAGTGA

Protein

MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHRVAVRREDAVAREMSRKLADDKKMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGLLALLSTGTK

Uniprot

Q2F5K1   H9J736   Q2F5K0   A0A3G1T1G7   A0A1E1W5V6   A0A194QY53   + More
I4DIY8   I4DJA7   S4P4H2   A0A3S2NEH2   A0A212EL61   A0A2H1W5S0   A0A2A4IT47   A0A0L7LAY1   A0A067RIR7   A0A2J7PBJ7   A0A2P8XN60   A0A0M9A255   A0A154PQN7   A0A2A3EN45   V9IF99   U3KR34   A0A0L7RJ97   A0A195CL98   E2A0K0   A0A195D9X3   F4WZ33   A0A195BQT1   A0A158NDN1   A0A151XEK6   A0A0L7QJX6   V5G6J0   E9IYV1   A0A3L8DZN5   A0A1D2MVJ5   A0A067RKR5   N6TG74   E2C5D7   A0A1B6EM72   A0A226E3Z6   D7EL46   A0A0C9PSB0   K7J1T1   A0A1B6K155   A0A1B6LN78   E0VK54   A0A232F6S2   U5ETN8   A0A069DNW4   R4G8L4   A0A1B6DWE4   A0A023EIJ2   R4WIR1   A0A0A9WYI6   A0A224XZ73   A0A023FAI7   A0A1S3IS39   A0A1D1YDY7   Q1HRN7   A0A1B6MQ12   A0A1L8DUR7   A0A1W4WVP4   A0A182RVS0   A0A182YM22   B4MZD6   A0A1Y1MJE8   A0A026VZ11   A0A182T648   A0A1Q3F9W0   A0A0L0CHP8   A0A1B0DDP8   A0A182KGD3   A0A0K8W808   A0A034WEV7   A0A0C9Q6B6   A0A293N222   B0WXG2   A0A195F4Y4   A0A084VMP8   A0A182LVJ0   A0A182P2U2   A0A2I9LPV3   A0A0A1XPR7   W8B847   Q7Q876   A0A1E1XS16   A0A1E1WYV3   A0A182VTK9   A0A1S4GZ67   A0A182X651   A0A182KWL4   A0A182IB73   A0A2R5LJW2   A0A023FX36   A0A023G1U9   A0A0K8TPY3   T1P7N5   A0A1I8NC39   A0A1L8EFC8   B3MPA7  

Pubmed

19121390    26354079    22651552    23622113    22118469    26227816    + More
24845553    29403074    20798317    21719571    21347285    21282665    30249741    27289101    23537049    18362917    19820115    20075255    20566863    28648823    26334808    24945155    23691247    25401762    26823975    25474469    17204158    17510324    25244985    17994087    28004739    24508170    26108605    25348373    24438588    29248469    25830018    24495485    12364791    29209593    28503490    20966253    26369729    25315136   

EMBL

DQ311422    ABD36366.1    BABH01013922    DQ311423    ABD36367.1    MG992374    + More
AXY94812.1    GDQN01008725    JAT82329.1    KQ461154    KPJ08506.1    AK401256    KQ459595    BAM17878.1    KPI95575.1    AK401375    BAM17997.1    GAIX01005964    JAA86596.1    RSAL01000163    RVE45374.1    AGBW02014132    OWR42219.1    ODYU01006382    SOQ48182.1    NWSH01007489    PCG62945.1    JTDY01001885    KOB72632.1    KK852452    KDR23667.1    NEVH01027081    PNF13716.1    PYGN01001675    PSN33432.1    KQ435776    KOX74886.1    KQ435050    KZC14235.1    KZ288215    PBC32682.1    JR043246    AEY59745.1    KQ414580    KOC71047.1    KQ977600    KYN01490.1    GL435626    EFN72903.1    KQ981082    KYN09720.1    GL888465    EGI60536.1    KQ976424    KYM88319.1    ADTU01012727    KQ982254    KYQ58787.1    KQ415027    KOC58928.1    GALX01002766    JAB65700.1    GL767051    EFZ14259.1    QOIP01000002    RLU25693.1    LJIJ01000500    ODM96824.1    KK852413    KDR24422.1    APGK01039052    KB740967    KB632399    ENN76773.1    ERL94740.1    GL452770    EFN76870.1    GECZ01030742    GECZ01006095    JAS39027.1    JAS63674.1    LNIX01000007    OXA51998.1    DS497806    EFA11879.1    GBYB01004243    JAG74010.1    GECU01002548    JAT05159.1    GEBQ01014824    JAT25153.1    DS235239    EEB13760.1    NNAY01000817    OXU26345.1    GANO01002693    JAB57178.1    GBGD01003131    JAC85758.1    GAHY01000767    JAA76743.1    GEDC01007316    JAS29982.1    GAPW01004833    JAC08765.1    AK417350    BAN20565.1    GBHO01030077    GBRD01012544    GDHC01019300    JAG13527.1    JAG53280.1    JAP99328.1    GFTR01003027    JAW13399.1    GBBI01000683    JAC18029.1    GDJX01015088    JAT52848.1    DQ440057    CH477441    ABF18090.1    EAT40851.1    EJY57689.1    GEBQ01001940    JAT38037.1    GFDF01003916    JAV10168.1    CH963913    EDW77409.1    GEZM01032222    GEZM01032221    JAV84760.1    KK107578    EZA48686.1    GFDL01010719    JAV24326.1    JRES01000384    KNC31742.1    AJVK01032139    GDHF01005068    JAI47246.1    GAKP01004841    JAC54111.1    GBYB01009658    JAG79425.1    GFWV01022437    MAA47164.1    DS232164    EDS36492.1    KQ981820    KYN35139.1    ATLV01014616    KE524975    KFB39242.1    AXCM01000488    GFWZ01000425    MBW20415.1    GBXI01001447    JAD12845.1    GAMC01011753    JAB94802.1    AAAB01008944    EAA10212.2    GFAA01001356    JAU02079.1    GFAC01007026    JAT92162.1    APCN01000644    GGLE01005704    MBY09830.1    GBBL01002012    JAC25308.1    GBBM01007247    JAC28171.1    GDAI01001412    JAI16191.1    KA644484    AFP59113.1    GFDG01001372    JAV17427.1    CH902620    EDV32226.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000283053    UP000007151    UP000218220    + More
UP000037510    UP000027135    UP000235965    UP000245037    UP000053105    UP000076502    UP000242457    UP000005203    UP000053825    UP000078542    UP000000311    UP000078492    UP000007755    UP000078540    UP000005205    UP000075809    UP000279307    UP000094527    UP000019118    UP000030742    UP000008237    UP000198287    UP000007266    UP000002358    UP000009046    UP000215335    UP000085678    UP000008820    UP000192223    UP000075900    UP000076408    UP000007798    UP000053097    UP000075901    UP000037069    UP000092462    UP000075881    UP000002320    UP000078541    UP000030765    UP000075883    UP000075885    UP000007062    UP000075920    UP000076407    UP000075882    UP000075840    UP000095301    UP000007801   

PRIDE

Q2F5K1    H9J736    Q2F5K0   

Pfam

PF07074   TRAP-gamma        + More
PF00501   AMP-binding
PF07716   bZIP_2

Interpro

IPR009779   SSR3        + More
IPR036259   MFS_trans_sf       
IPR000873   AMP-dep_Synth/Lig       
IPR042099   AMP-dep_Synthh-like_sf       
IPR004827   bZIP       

SUPFAM

SSF103473   SSF103473       

Gene 3D

3.40.50.12780    

ProteinModelPortal

Q2F5K1   H9J736   Q2F5K0   A0A3G1T1G7   A0A1E1W5V6   A0A194QY53   + More
I4DIY8   I4DJA7   S4P4H2   A0A3S2NEH2   A0A212EL61   A0A2H1W5S0   A0A2A4IT47   A0A0L7LAY1   A0A067RIR7   A0A2J7PBJ7   A0A2P8XN60   A0A0M9A255   A0A154PQN7   A0A2A3EN45   V9IF99   U3KR34   A0A0L7RJ97   A0A195CL98   E2A0K0   A0A195D9X3   F4WZ33   A0A195BQT1   A0A158NDN1   A0A151XEK6   A0A0L7QJX6   V5G6J0   E9IYV1   A0A3L8DZN5   A0A1D2MVJ5   A0A067RKR5   N6TG74   E2C5D7   A0A1B6EM72   A0A226E3Z6   D7EL46   A0A0C9PSB0   K7J1T1   A0A1B6K155   A0A1B6LN78   E0VK54   A0A232F6S2   U5ETN8   A0A069DNW4   R4G8L4   A0A1B6DWE4   A0A023EIJ2   R4WIR1   A0A0A9WYI6   A0A224XZ73   A0A023FAI7   A0A1S3IS39   A0A1D1YDY7   Q1HRN7   A0A1B6MQ12   A0A1L8DUR7   A0A1W4WVP4   A0A182RVS0   A0A182YM22   B4MZD6   A0A1Y1MJE8   A0A026VZ11   A0A182T648   A0A1Q3F9W0   A0A0L0CHP8   A0A1B0DDP8   A0A182KGD3   A0A0K8W808   A0A034WEV7   A0A0C9Q6B6   A0A293N222   B0WXG2   A0A195F4Y4   A0A084VMP8   A0A182LVJ0   A0A182P2U2   A0A2I9LPV3   A0A0A1XPR7   W8B847   Q7Q876   A0A1E1XS16   A0A1E1WYV3   A0A182VTK9   A0A1S4GZ67   A0A182X651   A0A182KWL4   A0A182IB73   A0A2R5LJW2   A0A023FX36   A0A023G1U9   A0A0K8TPY3   T1P7N5   A0A1I8NC39   A0A1L8EFC8   B3MPA7  

KEGG

100101160    K13251 translocon-associated protein subunit gamma | (RefSeq) translocon-associated protein gamma

PATHWAY

04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0005623   GO:0016021   GO:0006614   GO:0005783   GO:0016874   GO:0003700   GO:0020037   GO:0016491   GO:0007165   GO:0015031   GO:0016020   GO:0016742   GO:0003824  

PANTHER

PTHR13399  

Length:

183

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

81.3317699999999

Exp number, first 60 AAs:

24.2962

Total prob of N-in:

0.98949

POSSIBLE N-term signal

sequence

inside

1  -  30

TMhelix

31  -  48

outside

49  -  57

TMhelix

58  -  77

inside

78  -  135

TMhelix

136  -  155

outside

156  -  158

TMhelix

159  -  181

inside

182  -  183

 

 

Pi

38.33821

Theta

30.305897

Tajima's D

-0.517882

CLR

150.902374

CSRT

0.23958802059897

Interpretation

Uncertain