SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04582
Pre Gene Modal
BGIBMGA005481
Annotation
PREDICTED:_CUE_domain-containing_protein_1_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.178
 

Sequence

CDS
ATGCAACTTGAATTTACTCAGGCGATGAACGACTTCAAAACGATGTTTCCTGATATGGACGATGATGTCATCGAGGCTGTTCTTCGGGCAAACCAAGGCGCCGTAGACGCCACCATTGACCAGCTTTTAGCAATGAGCACCGATAACCAAAACGAACTGCTAAGACTAGAAATGGAACGCGTCGAAAGCAATACACCGTCTAAACGCAAAGATCGACGGAACACTCGCCCGGCTGATGAGTGCGACGACGACGATACTGCGGCATTAGTAAACGTTGAGGACGAGTCAGTCCCTCTTGCAGTTCGCAAAAGATGGATTCCCCGAATGTTGGGTCCACTACCACCTATGTTTCTACGAATTCCACCAGCCACAGATGCTCGGATTGATCTTAGTTTGGAGATGGATGACGATCGAATCGCCACCTTCTTACAAAATGAAGAGTTTATGGCCGAATTGCGTTGGAACCAGGAATTCATGGCAGCTCTAGACAGCGAACAAGGACATAAAACTAAAAGTCATGACGATGAAGCCGCTTTCAAAGAAAGACTCAAGAATATGGGTAAATTATCTAGAAAAAAATTCGCACAGTTATCACGAATGTTCACACGCGGTGGTTCACGCCGGGCAGGTGGCGCTAAAGCACCATCACGTGGGCCACCTGACAGCTTGCTTCTACAAGAGGAACACAGCGACGACGAGGACCGCCTACAACACAACAAAAACAAATAG
Protein
MQLEFTQAMNDFKTMFPDMDDDVIEAVLRANQGAVDATIDQLLAMSTDNQNELLRLEMERVESNTPSKRKDRRNTRPADECDDDDTAALVNVEDESVPLAVRKRWIPRMLGPLPPMFLRIPPATDARIDLSLEMDDDRIATFLQNEEFMAELRWNQEFMAALDSEQGHKTKSHDDEAAFKERLKNMGKLSRKKFAQLSRMFTRGGSRRAGGAKAPSRGPPDSLLLQEEHSDDEDRLQHNKNK

Summary

EMBL
BABH01013921    AGBW02014132    OWR42217.1    RSAL01000163    RVE45372.1    KQ461154    + More
KPJ08504.1    KQ459595    KPI95573.1    JTDY01001885    KOB72636.1    JXUM01111097    JXUM01111098    KQ565470    KXJ70933.1    GFDF01004531    JAV09553.1    GFDF01004530    JAV09554.1    AAAB01008960    EAA11690.4    GAMC01016589    JAB89966.1    GGFJ01007832    MBW56973.1    GGFJ01007833    MBW56974.1    GGFK01010483    MBW43804.1    KQ982696    KYQ51967.1    KK107295    QOIP01000009    EZA52973.1    RLU18762.1    KZ288349    PBC27395.1    JR051620    AEY61529.1    GL439579    EFN67041.1    KQ981490    KYN41086.1    LBMM01002134    KMQ95223.1    ATLV01011185    KE524650    KFB35911.1    KQ978023    KYM97858.1    ADMH02001911    ETN60540.1    KQ436240    KOX67358.1    GL763358    EFZ19740.1    GFDL01008762    JAV26283.1    GFDL01008732    JAV26313.1    DS232132    EDS35766.1    KQ414612    KOC69163.1    KQ976401    KYM92512.1    UFQT01000392    SSX23901.1    ADTU01013260    GBGD01002874    JAC86015.1    GL446678    EFN87407.1    KK852824    KDR15443.1    GBBI01000890    JAC17822.1    CP012525    ALC43187.1    GECL01000345    JAP05779.1    CH478018    EAT34363.1    GAHY01002103    JAA75407.1    CH902618    EDV38753.1    CH379069    KRT07852.1    KQ434823    KZC07225.1    EAL31074.2    KRT07851.1    CH933816    KRG07602.1    CH954178    KQS43123.1    AE014296    ADV37459.1    CM002912    KMY96966.1    GBHO01033662    GDHC01011826    JAG09942.1    JAQ06803.1    EDV50240.1    AY070503    AAF47582.2    AAL47974.1    KPU77617.1    CH480817    EDW50132.1    OUUW01000009    SPP84894.1    CM000363    EDX08877.1    KMY96964.1    CM000159    KRK00808.1    NNAY01002506    OXU21169.1    KQS43124.1    AAN11501.1    KMY96965.1    SPP84895.1    BT125871    ADU79259.1    KQ979851    KYN18859.1    CH940647    KRF84061.1    EDW92919.1    KPU77618.1    AJVK01028768    AJVK01028769    KRK00807.1    CAQQ02160080    CH479188    EDW40562.1    DS235206    EEB13310.1    CH916366    EDV96750.1    GL888182    EGI65650.1    JH430935    GFXV01000647    MBW12452.1    EDW17085.1    CVRI01000063    CRL04438.1    AJWK01002264    IAAA01046807    LAA10586.1    GGMR01019624    MBY32243.1    GDRN01089556    GDRN01089553    JAI60639.1    ABLF02036751    ABLF02036756    ABLF02036759    ABLF02064512   
Pfam
PF02845   CUE
Interpro
IPR040195   CUE_CUED1        + More
IPR040192   CUEDC1       
IPR009060   UBA-like_sf       
IPR003892   CUE       
SUPFAM
SSF46934   SSF46934       
PDB
2DHY     E-value=2.38504e-12,     Score=172

Ontologies

Topology

Length:
242
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00033
Exp number, first 60 AAs:
0
Total prob of N-in:
0.07459
outside
1  -  242
 
 

Population Genetic Test Statistics

Pi
185.386637
Theta
179.840571
Tajima's D
0.257313
CLR
0.043576
CSRT
0.449477526123694
Interpretation
Uncertain
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