Gene

KWMTBOMO04581

Pre Gene Modal

BGIBMGA005480

Annotation

lysosomal-associated_transmembrane_protein_[Bombyx_mori]

Location

Bomo_Chr8(+):10355860-10361257      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.841

CDS

ATGTTAAGATTCCATCCCAAGTTGGGAAGTGAACGTGGCAGTGAGTGGCTATGCTGCTTCTGCCTACATGTTCGGACTGGCACAATTATCCTGGGATCATGGCACCTGTTCCTGCACCTAGTGGCACTAGGAGTTTTAGCAGCGATTGTGCGTGATCCTCGATTGCTGGATGAACTGGACCGTGAGTCATCCCCAGTGAGTTCATGGAGCAATGTGGGGCGCACTGGAGATGTACTGCCCACACCACTGTCAAATGTGGAAACTCGTCCCAGCCCATACTCTCAACATGCTTCACATCCTAGTGACCACAGCCTAATATACCTGGGTACCATGGCTCTCACACTGATTATGATCTACGGCGCCGCTCGTGGGAAACCGGCTTATCTGCTGCCCTTCTTCTGTCTTCAGATCTTCGACTTTGCCATCACCATTTTGACGGCAACTGGCTATCTGTGTTACTTGCGTCAAATCCATGCCTTGATTGCGGAGACCCGTCGCGTTCCCTTCCGCGAGGAGTTGCTGCGGCTGCCGGCGCCAGCTCTTGCCTTCGTCGTCATCTCTGCTTTGATCGTGGCCGTGATAATTAAAGGCTACTGCATTAGCGTTGTGTGGCGTTGCTACAAGTACCTGACGATGAGGACGGCGGCCCTGCAAAGCCTCACCCCGTTCGTAATCTCGAGCGACGGCATCGTGACCTCCGCCCCCGCGCCCCCCTACCCGCAGCCCGCGACGCCGGACTACTCGAGCCTGCTGCCGGACTACGAGGAGGCCGTGAAGCAAACCCCGCCGCCCTCGTACCGGGCCGCCACGCTGATGGCCGTAGCCGACCCGGAAGCTGCTGCTGTCTCCGAATCTCGTCCAATAGAGCAACAGACGGGCCGTCCCGTGGCCAGCGCCACCATCGTGGTGCTACCACAGGAGGGAGCACACGCTCGCGTCTGA

Protein

MLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYLGTMALTLIMIYGAARGKPAYLLPFFCLQIFDFAITILTATGYLCYLRQIHALIAETRRVPFREELLRLPAPALAFVVISALIVAVIIKGYCISVVWRCYKYLTMRTAALQSLTPFVISSDGIVTSAPAPPYPQPATPDYSSLLPDYEEAVKQTPPPSYRAATLMAVADPEAAAVSESRPIEQQTGRPVASATIVVLPQEGAHARV

Uniprot

Q964G6   A0A212EL49   A0A1E1WEC2   A0A1E1WCV5   H9J7I8   A0A194QSK2   + More
A0A194PRJ5   S4PS19   A0A336LX09   A0A0K8TP39   U5EXK5   A0A1L8D904   A0A1L8D986   A0A1B0GIU6   A0A0L0BNJ4   A0A1W7R4P0   A0A1Q3G3X1   A0A1A9YCZ1   A0A1B0C1T8   A0A0A1XI65   W8B2J2   A0A023EP81   T1PK73   A0A1I8MLS3   A0A1A9ZAH0   A0A0R1DM41   A0A0R3NV09   A0A0Q5WC14   A0A0Q9WH11   A0A3B0J0R7   A0A1A9WC70   A0A0R3NWQ3   A0A0J9R8G6   A0A1Y1JVF1   Q95R82   A0A1I8P844   A0A3B0JM25   Q28Y57   B3N868   B4GGK6   B4P3B9   A0A0K8VLR2   A0A3B0J0S3   A0A034WEY4   B4HS87   A0A1W4UKP3   B4QG80   B4LNC3   Q7KGU6   F2FB78   A0A0Q9XGE0   A0A0P8ZLV3   A0A1W4UXX3   T1E255   B4J8L6   B4KMX5   A0A0M4EU68   Q16R19   A0A1S4FS63   A0A1Q3G414   T1DEF9   T1D497   D6WYF0   A0A067QQE9   A0A023FAT0   A0A0P4VJ05   R4G3H3   A0A224XV57   A0A069DR95   A0A0V0G3X3   A0A3B0JT72   A0A1B6LJD2   A0A1B6GB80   A0A1B0D982   B4MPN8   E0V9I0   A0A2J7QCB6   A0A161MQW8   N6TPL7   A0A0A9YN87   A0A2H8TUG9   A0A2S2PUV7   J9JNZ6   A0A1S3CVF2   A0A1S3CU96   A0A1S3CU28  

Pubmed

22118469    19121390    26354079    23622113    26369729    26108605    + More
25830018    24495485    24945155    25315136    17994087    17550304    15632085    18057021    22936249    28004739    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25348373    24330624    17510324    18362917    19820115    24845553    25474469    27129103    26334808    20566863    23537049    25401762    26823975   

EMBL

AF317420    AAK69598.1    AGBW02014132    OWR42216.1    GDQN01005748    JAT85306.1    + More
GDQN01006269    JAT84785.1    BABH01013921    KQ461154    KPJ08503.1    KQ459595    KPI95573.1    GAIX01000315    JAA92245.1    UFQT01000257    SSX22455.1    GDAI01001461    JAI16142.1    GANO01000037    JAB59834.1    GFDF01011219    JAV02865.1    GFDF01011220    JAV02864.1    AJWK01017660    AJWK01017661    JRES01001589    KNC21665.1    GEHC01001518    JAV46127.1    GFDL01000540    JAV34505.1    JXJN01024172    GBXI01003640    JAD10652.1    GAMC01011196    GAMC01011195    JAB95360.1    GAPW01002321    JAC11277.1    KA644592    KA649089    AFP63718.1    CM000157    KRJ98383.1    CM000071    KRT02853.1    CH954177    KQS70860.1    CH940648    KRF79760.1    KRF79762.1    OUUW01000001    SPP74325.1    KRT02854.1    CM002911    KMY92336.1    GEZM01102829    JAV51770.1    AY061575    AE013599    AAL29123.1    AAM68833.2    SPP74326.1    EAL26108.3    EDV59481.2    CH479183    EDW35626.1    EDW89392.2    GDHF01027245    GDHF01017060    GDHF01012804    GDHF01011449    JAI25069.1    JAI35254.1    JAI39510.1    JAI40865.1    SPP74327.1    GAKP01006615    GAKP01006614    GAKP01006613    JAC52338.1    CH480816    EDW46982.1    CM000362    EDX06230.1    KMY92335.1    EDW61075.1    KRF79761.1    AF317419    AAF59049.3    AAK69597.1    BT126165    ADZ99417.1    CH933808    KRG04970.1    CH902619    KPU75766.1    GALA01001039    JAA93813.1    CH916367    EDW01283.1    EDW09897.1    CP012524    ALC41187.1    CH477726    EAT36855.1    GFDL01000539    JAV34506.1    GALA01001037    JAA93815.1    GALA01001038    JAA93814.1    KQ971362    EFA08970.2    KK853050    KDR12045.1    GBBI01000568    JAC18144.1    GDKW01002517    JAI54078.1    ACPB03014381    GAHY01002205    JAA75305.1    GFTR01004443    JAW11983.1    GBGD01002499    JAC86390.1    GECL01003375    JAP02749.1    SPP74328.1    GEBQ01016263    JAT23714.1    GECZ01010075    JAS59694.1    AJVK01004274    CH963849    EDW74077.1    DS234994    EEB10036.1    NEVH01016290    PNF26228.1    GEMB01002060    JAS01119.1    APGK01056848    APGK01056849    KB741277    KB632155    ENN71175.1    ERL89213.1    GBHO01044153    GBHO01043641    GBHO01037678    GBHO01037677    GBHO01037675    GBHO01037674    GBHO01037673    GBHO01037672    GBHO01032597    GBHO01031425    GBHO01028974    GBHO01028956    GBHO01028954    GBHO01025887    GBHO01025885    GBHO01025884    GBHO01025882    GBHO01025881    GBHO01025880    GBHO01018835    GBHO01018827    GBHO01017550    GBHO01017549    GBHO01017548    GBHO01017547    GBHO01014808    GBHO01014804    GBHO01014781    GBHO01009083    GBHO01009082    GBHO01009081    GBHO01008689    GBHO01006415    GBRD01015875    GBRD01015873    GBRD01015872    GBRD01015870    GBRD01015869    GBRD01013339    GBRD01013338    GBRD01013336    GBRD01013335    GBRD01013334    GBRD01013332    GBRD01007220    GBRD01006370    GBRD01006355    GBRD01001335    GBRD01001324    GBRD01001321    GBRD01000584    GDHC01019727    GDHC01018744    GDHC01015628    JAF99450.1    JAF99962.1    JAG05926.1    JAG05927.1    JAG05929.1    JAG05930.1    JAG05931.1    JAG05932.1    JAG11007.1    JAG12179.1    JAG14630.1    JAG14648.1    JAG14650.1    JAG17717.1    JAG17719.1    JAG17720.1    JAG17722.1    JAG17723.1    JAG17724.1    JAG24769.1    JAG24777.1    JAG26054.1    JAG26055.1    JAG26056.1    JAG26057.1    JAG28796.1    JAG28800.1    JAG28823.1    JAG34521.1    JAG34522.1    JAG34523.1    JAG34915.1    JAG37189.1    JAG49951.1    JAP98901.1    JAP99884.1    JAQ03001.1    GFXV01005785    MBW17590.1    GGMR01020027    MBY32646.1    ABLF02012199    ABLF02012200    ABLF02038829   

Proteomes

UP000007151    UP000005204    UP000053240    UP000053268    UP000092461    UP000037069    + More
UP000092443    UP000092460    UP000095301    UP000092445    UP000002282    UP000001819    UP000008711    UP000008792    UP000268350    UP000091820    UP000000803    UP000095300    UP000008744    UP000001292    UP000192221    UP000000304    UP000009192    UP000007801    UP000001070    UP000092553    UP000008820    UP000007266    UP000027135    UP000015103    UP000092462    UP000007798    UP000009046    UP000235965    UP000019118    UP000030742    UP000007819    UP000079169   

PRIDE

Q964G6    H9J7I8    Q95R82    Q7KGU6    F2FB78   

Pfam

PF03821   Mtp        + More
PF08217   DUF1712
PF02845   CUE
PF07707   BACK
PF15881   DUF4734

Interpro

IPR004687   LAPTM4/5        + More
IPR013176   Ccz1       
IPR040195   CUE_CUED1       
IPR009060   UBA-like_sf       
IPR003892   CUE       
IPR011333   SKP1/BTB/POZ_sf       
IPR031750   DUF4734       
IPR011705   BACK       

SUPFAM

SSF46934   SSF46934        + More
SSF54695   SSF54695       

CDD

cd14366  CUE_CUED1

ProteinModelPortal

Q964G6   A0A212EL49   A0A1E1WEC2   A0A1E1WCV5   H9J7I8   A0A194QSK2   + More
A0A194PRJ5   S4PS19   A0A336LX09   A0A0K8TP39   U5EXK5   A0A1L8D904   A0A1L8D986   A0A1B0GIU6   A0A0L0BNJ4   A0A1W7R4P0   A0A1Q3G3X1   A0A1A9YCZ1   A0A1B0C1T8   A0A0A1XI65   W8B2J2   A0A023EP81   T1PK73   A0A1I8MLS3   A0A1A9ZAH0   A0A0R1DM41   A0A0R3NV09   A0A0Q5WC14   A0A0Q9WH11   A0A3B0J0R7   A0A1A9WC70   A0A0R3NWQ3   A0A0J9R8G6   A0A1Y1JVF1   Q95R82   A0A1I8P844   A0A3B0JM25   Q28Y57   B3N868   B4GGK6   B4P3B9   A0A0K8VLR2   A0A3B0J0S3   A0A034WEY4   B4HS87   A0A1W4UKP3   B4QG80   B4LNC3   Q7KGU6   F2FB78   A0A0Q9XGE0   A0A0P8ZLV3   A0A1W4UXX3   T1E255   B4J8L6   B4KMX5   A0A0M4EU68   Q16R19   A0A1S4FS63   A0A1Q3G414   T1DEF9   T1D497   D6WYF0   A0A067QQE9   A0A023FAT0   A0A0P4VJ05   R4G3H3   A0A224XV57   A0A069DR95   A0A0V0G3X3   A0A3B0JT72   A0A1B6LJD2   A0A1B6GB80   A0A1B0D982   B4MPN8   E0V9I0   A0A2J7QCB6   A0A161MQW8   N6TPL7   A0A0A9YN87   A0A2H8TUG9   A0A2S2PUV7   J9JNZ6   A0A1S3CVF2   A0A1S3CU96   A0A1S3CU28  

KEGG

692592    K12387 lysosomal-associated transmembrane protein | (RefSeq) lysosomal-associated transmembrane prot

PATHWAY

04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0035658   GO:0016192   GO:0016020  

Length:

313

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

86.8173499999999

Exp number, first 60 AAs:

21.98568

Total prob of N-in:

0.95692

POSSIBLE N-term signal

sequence

inside

1  -  27

TMhelix

28  -  50

outside

51  -  102

TMhelix

103  -  122

inside

123  -  128

TMhelix

129  -  151

outside

152  -  181

TMhelix

182  -  204

inside

205  -  313

 

 

Pi

27.743894

Theta

22.620687

Tajima's D

0.562052

CLR

0.021818

CSRT

0.542722863856807

Interpretation

Uncertain