Gene

KWMTBOMO04560

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr8(+):9822232-9824081      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.677 Nuclear   Reliability : 1.548 PlasmaMembrane   Reliability : 1.253

CDS

ATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTCAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATTAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCTCTCCCGACTAGGCGCGTCAACACCCCCGCCCCCGCCGTTCGCCCAATCACGATGTACGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATCAAGACGGTACGCGATCGTGCCGCCTTCATCCTAGGACGTCTCTACCCGATGATATGTAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCATACACTTAAAATCCTTTCAAATTATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGACCTGGACTTAGAGTCCATCAGTAAGTATCTGCAGTCGGCGTCCATGCGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCTAAACACGTCATCTCGGATCCTCCTGATCCACTAACGGTGCTTTTAGAAGCTACACTATTCCTGGGTGACATAGGCTATAATATTTTTTGA

Protein

MGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVLLEATLFLGDIGYNIF

Uniprot

K9N5J5   Q9XXW0   Q93137   Q9BPQ0   A0A194Q1H8   A0A0N0PA09   + More
A0A0N1PFV1   O96544   O96546   A0A1Y1NA23   V5GNF3   V5I850   V5GNJ2   A0A139WA11   A0A2S2PR14   A0A2S2Q823   X1WMU5   J9KKL3   X1WLB2   A0A2S2QZC0   A0A139W8G9   X1WWC4   X1WXU3   A0A224XF24   A0A087T1W0   A0A2J7PF43   A0A2J7QQP1   A0A2J7RRU8   A0A023EZE6   U4UTK6   A0A1B6LG18   A0A087U2S8   X1X664   X1X5Q5   J9LLC8   N6UKN2   A0A2J7RB54   A0A2J7RPU2   A0A2J7Q0Q6   A0A2J7QUJ9   A0A2J7R6U1   A0A2J7R2E1   A0A2J7RIW7   A0A2J7RS77   A0A2J7RM10   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7PMP6   Q8T9X4   A0A2J7Q059   A0A2S2NKN0   A0A2J7QFL0   A0A2J7QR37   A0A2J7PBY3   Q8I7P8   A0A2J7RKP3   A0A2J7QY69   A0A069DZL8   A0A352X8G4   X1WL89   J9KC83   A0A2J7PDS9   A0A2S2PH29   A0A2J7PMP9   A0A2J7Q6J2   A0A2S2N7M6   A0A2J7QAT1   A0A2H8TWD9   A0A1Y1MAT4   A0A2J7Q1Y9   X1X928   A0A0C9R3N9   A0A2J7R8R8   A0A069DRZ5   A0A3N5Z7I3   A0A2J7PDM0   A0A2S2PPK8   X1WQI9   A0A2J7QEZ4   A0A2J7Q5G9   A0A1B6EH09   A0A1Y1M7E9   Q07995   J9KCZ4   A0A2H8TES1   A0A139W9S2   A0A2M4BD67   A0A023F705   A0A2J7PU96   A0A2J7Q627   A0A2J7RL12   A0A2J7RS81   D6WFI4   A0A2J7PVE7   A0A087TPE4   A0A087T2T6   A0A2M4BDV6   A0A2A4K8E7   A0A182GKD2  

Pubmed

23652563    10333566    26354079    10380107    28004739    18362917    + More
19820115    25474469    23537049    26334808    30148503    30086797    8387152    26483478   

EMBL

KC165845    AFY12622.1    AB018558    BAA76304.1    U07847    AAA17752.1    + More
AB055391    BAB21761.1    KQ459580    KPI99178.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF081101    AAC72919.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    GALX01005300    JAB63166.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GGMR01019198    MBY31817.1    GGMS01004685    MBY73888.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02042518    ABLF02057746    GGMS01013269    MBY82472.1    KQ973342    KXZ75569.1    ABLF02003961    ABLF02059872    ABLF02008933    GFTR01008038    JAW08388.1    KK113014    KFM59099.1    NEVH01026085    PNF14941.1    NEVH01012084    PNF30905.1    NEVH01000598    PNF43535.1    GBBI01004571    JAC14141.1    KB632361    ERL93526.1    GEBQ01017345    JAT22632.1    KK117880    KFM71667.1    ABLF02043973    ABLF02041993    ABLF02029215    APGK01020047    KB740155    ENN81216.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    NEVH01019964    PNF22161.1    NEVH01010546    PNF32261.1    NEVH01006754    PNF36554.1    NEVH01007838    PNF34986.1    NEVH01003017    PNF40781.1    NEVH01000280    PNF43672.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01023962    PNF17612.1    AF456125    AAL57609.1    NEVH01020071    PNF21969.1    GGMR01004707    MBY17326.1    NEVH01014858    PNF27387.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    AY180919    AAN87272.1    NEVH01002716    PNF41415.1    NEVH01009134    PNF33528.1    GBGD01000415    JAC88474.1    DNOY01000259    HBE18313.1    ABLF02019349    ABLF02041900    ABLF02033757    NEVH01026154    PNF14491.1    GGMR01016114    MBY28733.1    NEVH01023961    PNF17613.1    NEVH01017470    PNF24199.1    GGMR01000167    MBY12786.1    NEVH01016327    PNF25684.1    GFXV01006424    MBW18229.1    GEZM01039082    JAV81425.1    NEVH01019376    PNF22596.1    ABLF02066620    GBYB01007412    JAG77179.1    NEVH01006721    PNF37225.1    GBGD01002174    JAC86715.1    RPOV01000134    RPJ78669.1    NEVH01026386    PNF14434.1    GGMR01018716    MBY31335.1    ABLF02022418    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    GEDC01000118    JAS37180.1    GEZM01038405    JAV81653.1    S59870    AAB26437.2    ABLF02008463    GFXV01000774    MBW12579.1    KQ972067    KYB24656.1    GGFJ01001858    MBW50999.1    GBBI01001692    JAC17020.1    NEVH01021205    PNF19912.1    NEVH01017542    PNF24034.1    NEVH01002704    PNF41489.1    NEVH01000269    PNF43694.1    KQ971327    EFA00927.1    NEVH01020963    PNF20308.1    KK116158    KFM66983.1    KK113137    KFM59425.1    GGFJ01001857    MBW50998.1    NWSH01000032    PCG80497.1    JXUM01013305    KQ560374    KXJ82729.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000030742    + More
UP000019118    UP000218220    UP000069940    UP000249989   

PRIDE

K9N5J5    Q9XXW0    Q93137    Q9BPQ0    Q8T9X4    Q8I7P8    + More

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00077   RVP
PF00665   rve
PF17917   RT_RNaseH

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001969   Aspartic_peptidase_AS       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR001995   Peptidase_A2_cat       
IPR041373   RT_RNaseH       
IPR018061   Retropepsins       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR021109   Peptidase_aspartic_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF50630   SSF50630       

Gene 3D

3.60.10.10     2.40.70.10     3.30.420.10    

ProteinModelPortal

K9N5J5   Q9XXW0   Q93137   Q9BPQ0   A0A194Q1H8   A0A0N0PA09   + More
A0A0N1PFV1   O96544   O96546   A0A1Y1NA23   V5GNF3   V5I850   V5GNJ2   A0A139WA11   A0A2S2PR14   A0A2S2Q823   X1WMU5   J9KKL3   X1WLB2   A0A2S2QZC0   A0A139W8G9   X1WWC4   X1WXU3   A0A224XF24   A0A087T1W0   A0A2J7PF43   A0A2J7QQP1   A0A2J7RRU8   A0A023EZE6   U4UTK6   A0A1B6LG18   A0A087U2S8   X1X664   X1X5Q5   J9LLC8   N6UKN2   A0A2J7RB54   A0A2J7RPU2   A0A2J7Q0Q6   A0A2J7QUJ9   A0A2J7R6U1   A0A2J7R2E1   A0A2J7RIW7   A0A2J7RS77   A0A2J7RM10   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7PMP6   Q8T9X4   A0A2J7Q059   A0A2S2NKN0   A0A2J7QFL0   A0A2J7QR37   A0A2J7PBY3   Q8I7P8   A0A2J7RKP3   A0A2J7QY69   A0A069DZL8   A0A352X8G4   X1WL89   J9KC83   A0A2J7PDS9   A0A2S2PH29   A0A2J7PMP9   A0A2J7Q6J2   A0A2S2N7M6   A0A2J7QAT1   A0A2H8TWD9   A0A1Y1MAT4   A0A2J7Q1Y9   X1X928   A0A0C9R3N9   A0A2J7R8R8   A0A069DRZ5   A0A3N5Z7I3   A0A2J7PDM0   A0A2S2PPK8   X1WQI9   A0A2J7QEZ4   A0A2J7Q5G9   A0A1B6EH09   A0A1Y1M7E9   Q07995   J9KCZ4   A0A2H8TES1   A0A139W9S2   A0A2M4BD67   A0A023F705   A0A2J7PU96   A0A2J7Q627   A0A2J7RL12   A0A2J7RS81   D6WFI4   A0A2J7PVE7   A0A087TPE4   A0A087T2T6   A0A2M4BDV6   A0A2A4K8E7   A0A182GKD2  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676   GO:0005634   GO:0015074   GO:0004190  

Length:

338

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.32356

Exp number, first 60 AAs:

0.01244

Total prob of N-in:

0.01488

outside

1  -  338

 

 

Pi

211.184559

Theta

62.813899

Tajima's D

5.086592

CLR

0.505195

CSRT

0.999950002499875

Interpretation

Uncertain