Gene

KWMTBOMO04556

Annotation

putative_rab-like_protein_5-like_isoform_1_[Danaus_plexippus]

Location

Bomo_Chr8(-):9638106-9640566      View in EpiBrowser

Full name

Intraflagellar transport protein 22 homolog      

Alternative Name

Rab-like protein 5

Location in the cell

Nuclear   Reliability : 1.921

CDS

ATGCAACCTAATAAATTGAAGATACTGATGATAGGTCCCTCTGAAAGTGGCAAAACTCAAATAGCTAATTTTTTATCGAATTCTATTAATATTGATGAAGCGGGAAACCCGAAGCCTACTCAAGGATTAAGAATAGTGGAATTCGAACAGTCAAATATAAACTATACCGGAAGAAACGTAGATATAGAATTGTGGGACTGTAGTGGTGATCATAGATTCGAATCATGCTGGCCTGCTTTAAGATTTGGAGTTAAAGGAGTAATTTTAGTTTGTTCATCTAACACATCAGAAGTCGCTCCTAGAGAATTAGAATTGCTATATAACTACTTTGTATCTCAACCAAAGCTATCCACTAAACAGTGTGTGGTGTTTTACAACTGCGTAGATGATCAATACGATGTTGGTCATCTTAATTTATCTTCGACATTTTCAAGAATATCTCAAGTCGCTGTGAATTTGAGAACAGAACGTGAACGTTTGAAAACTGAATTTTCTAATTACATAACCTCTGTACTTCAGTCGGTATAA

Protein

MQPNKLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELWDCSGDHRFESCWPALRFGVKGVILVCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVVFYNCVDDQYDVGHLNLSSTFSRISQVAVNLRTERERLKTEFSNYITSVLQSV

Description

Small GTPase-like component of the intraflagellar transport (IFT) complex B.

Subunit

Component of the IFT complex B, at least composed of IFT20, IFT22, HSPB11/IFT25, IFT27, IFT46, IFT52, TRAF3IP1/IFT54, IFT57, IFT74, IFT80, IFT81, and IFT88. Interacts with IFT88 (By similarity).
Component of the IFT complex B, at least composed of IFT20, IFT22, HSPB11/IFT25, IFT27, IFT46, IFT52, TRAF3IP1/IFT54, IFT57, IFT74, IFT80, IFT81, and IFT88. Interacts with IFT88.

Similarity

Belongs to the small GTPase superfamily. Rab family.

Keywords

Alternative splicing   Cell projection   Cilium   Complete proteome   GTP-binding   Nucleotide-binding   Phosphoprotein   Reference proteome  

Feature

chain  Intraflagellar transport protein 22 homolog
splice variant  In isoform 3.

Uniprot

A0A2W1BXN1   A0A2H1UZZ6   A0A212F476   A0A0L7LUD8   A0A067R4E3   A0A087ZUD6   + More
A0A0L7QNU4   W4Z5V1   A0A154PLM0   E2BI81   A0A3L8DG41   A0A3R7SPR1   E2AXA6   A0A3B3TES6   V9KJA2   A0A2R9ADG8   H2QV55   A0A024QYV3   Q9H7X7   A0A2U3VUQ0   A0A1B6CYT5   A0A2J8XU70   A0A026VZP2   A0A2Y9I237   A0A2U3XQT6   A0A1B6F5E3   A0A3Q7NPS1   A0A1S3GEF7   T2M5X3   A0A2K5IMY4   A0A250XVW4   A0A1B6IK14   U3EK23   A0A0D9RZL5   Q4R4K5   G5AXB6   A0A2K6Q8G0   R7UG98   F6PS53   A0A2A3EJL7   A0A2K6EN03   A0A3Q7XBR6   I3MIL2   A0A151X8C9   A0A2K5NXF2   A0A2K6TR13   G1PKZ0   A0A337SN32   A0A2K5ZPZ0   A0A158NP14   A0A096NR58   G3U3H5   M3YWV4   A0A2K5QW05   F7A8A4   A0A0P4WF57   A0A2Y9J931   A0A3Q0CGZ2   G1STM1   A0A087UQT1   H0WFM3   S4RWD7   A0A1W4XA72   A0A3Q7UBY9   A0A0L8HD41   F6V8Z0   A7S8S6   F1RKG2   H2YA04   A0A1S3H1D7   A0A384AHF1   A0A2A2KQW2   H3BFQ7   Q9DAI2   F7CN84   A0A2Y9FLW5   Q5FVJ7   C1BW53   A0A3B1IVU6   A0A1A6GH16   A0A1S2ZE45   A0A2U3UZM3   A0A341BHL5   A0A091DWJ0   A0A2Y9PLW1   L8IQU7   A0A3P9KB75   A0A286XRH9   A0A147BPA0   B5X756   A0A0P7WDB2   A0A340Y6M1   E3TDW6   A0A2G9U682   A0A1W4Z174   A0A3Q2PQZ4   W5PZK3   A0A3Q1GDG7   A0A3Q1B443   A0A3P8UHQ8  

Pubmed

28756777    22118469    26227816    24845553    20798317    30249741    + More
29240929    24402279    22722832    16136131    11181995    14702039    12853948    15489334    17974005    23186163    24508170    24065732    28087693    25243066    21993625    25362486    23254933    17431167    25319552    21993624    17975172    21347285    19892987    28071753    16341006    17615350    9215903    16141072    19253336    21183079    17495919    20433749    25329095    22751099    17554307    29652888    20634964    20809919   

EMBL

KZ149904    PZC78405.1    ODYU01000039    SOQ34139.1    AGBW02010434    OWR48522.1    + More
JTDY01000068    KOB79070.1    KK852704    KDR18061.1    KQ414855    KOC60161.1    AAGJ04121967    AAGJ04121968    KQ434938    KZC12120.1    GL448457    EFN84612.1    QOIP01000008    RLU19374.1    QCYY01002508    ROT69876.1    GL443548    EFN61886.1    JW865663    AFO98180.1    AJFE02020806    AJFE02020807    AC187615    GABC01009638    GABD01007837    NBAG03000065    JAA01700.1    JAA25263.1    PNI92632.1    PNI92634.1    CH471197    EAW50218.1    AK023287    AK024179    AK298888    AC006329    BC004522    BC009823    BC038668    AL157469    GEDC01018813    JAS18485.1    ABGA01059864    ABGA01059865    NDHI03003310    PNJ85584.1    PNJ85586.1    KK107648    EZA48354.1    GECZ01024359    GECZ01009590    JAS45410.1    JAS60179.1    HAAD01001083    CDG67315.1    GFFV01004484    JAV35461.1    GECU01020447    JAS87259.1    GAMR01002526    GAMQ01004855    GAMP01010136    JAB31406.1    JAB36996.1    JAB42619.1    AQIB01139502    AB169889    JH167379    GEBF01006548    EHB01678.1    JAN97084.1    AMQN01008687    KB303737    ELU02828.1    JSUE03029184    JU335951    JU476832    JV047955    AFE79704.1    AFH33636.1    AFI38026.1    KZ288223    PBC32003.1    AGTP01053258    KQ982422    KYQ56623.1    AAPE02016753    AANG04004562    ADTU01022032    AHZZ02022087    AEYP01053164    GDRN01061587    GDRN01061586    JAI65195.1    KK121096    KFM79720.1    AAQR03108005    AAQR03108006    KQ418495    KOF87097.1    AAEX03004261    DS469599    EDO39919.1    AEMK02000015    LIAE01007929    PAV76207.1    AFYH01014644    AK005820    BC009150    BC089940    BT078832    ACO13256.1    LZPO01097164    OBS64582.1    KN121778    KFO35462.1    JH880833    ELR58438.1    AAKN02032072    GEGO01003092    JAR92312.1    BT046875    ACI66676.1    JARO02009956    KPP61127.1    GU588546    ADO28502.1    KZ348740    PIO65779.1    AMGL01069406   

Proteomes

UP000007151    UP000037510    UP000027135    UP000005203    UP000053825    UP000007110    + More
UP000076502    UP000008237    UP000279307    UP000283509    UP000000311    UP000261540    UP000240080    UP000002277    UP000005640    UP000245340    UP000001595    UP000053097    UP000248481    UP000245341    UP000286641    UP000081671    UP000233080    UP000008225    UP000029965    UP000233100    UP000006813    UP000233200    UP000014760    UP000006718    UP000242457    UP000233160    UP000286642    UP000005215    UP000075809    UP000233060    UP000233220    UP000001074    UP000011712    UP000233140    UP000005205    UP000028761    UP000007646    UP000000715    UP000233040    UP000002281    UP000248482    UP000189706    UP000001811    UP000054359    UP000005225    UP000245300    UP000192223    UP000286640    UP000053454    UP000002254    UP000001593    UP000008227    UP000007875    UP000085678    UP000261681    UP000218231    UP000008672    UP000000589    UP000002280    UP000248484    UP000002494    UP000018467    UP000092124    UP000079721    UP000245320    UP000252040    UP000028990    UP000248483    UP000265180    UP000005447    UP000087266    UP000034805    UP000265300    UP000221080    UP000192224    UP000265000    UP000002356    UP000257200    UP000257160    UP000265080   

PRIDE

Q9H7X7    Q4R4K5    F1RKG2    Q9DAI2    Q5FVJ7   

Pfam

PF00071   Ras        + More
PF00035   dsrm

Interpro

IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR014720   dsRBD_dom       

SUPFAM

SSF52540   SSF52540       

CDD

cd00048  DSRM

ProteinModelPortal

A0A2W1BXN1   A0A2H1UZZ6   A0A212F476   A0A0L7LUD8   A0A067R4E3   A0A087ZUD6   + More
A0A0L7QNU4   W4Z5V1   A0A154PLM0   E2BI81   A0A3L8DG41   A0A3R7SPR1   E2AXA6   A0A3B3TES6   V9KJA2   A0A2R9ADG8   H2QV55   A0A024QYV3   Q9H7X7   A0A2U3VUQ0   A0A1B6CYT5   A0A2J8XU70   A0A026VZP2   A0A2Y9I237   A0A2U3XQT6   A0A1B6F5E3   A0A3Q7NPS1   A0A1S3GEF7   T2M5X3   A0A2K5IMY4   A0A250XVW4   A0A1B6IK14   U3EK23   A0A0D9RZL5   Q4R4K5   G5AXB6   A0A2K6Q8G0   R7UG98   F6PS53   A0A2A3EJL7   A0A2K6EN03   A0A3Q7XBR6   I3MIL2   A0A151X8C9   A0A2K5NXF2   A0A2K6TR13   G1PKZ0   A0A337SN32   A0A2K5ZPZ0   A0A158NP14   A0A096NR58   G3U3H5   M3YWV4   A0A2K5QW05   F7A8A4   A0A0P4WF57   A0A2Y9J931   A0A3Q0CGZ2   G1STM1   A0A087UQT1   H0WFM3   S4RWD7   A0A1W4XA72   A0A3Q7UBY9   A0A0L8HD41   F6V8Z0   A7S8S6   F1RKG2   H2YA04   A0A1S3H1D7   A0A384AHF1   A0A2A2KQW2   H3BFQ7   Q9DAI2   F7CN84   A0A2Y9FLW5   Q5FVJ7   C1BW53   A0A3B1IVU6   A0A1A6GH16   A0A1S2ZE45   A0A2U3UZM3   A0A341BHL5   A0A091DWJ0   A0A2Y9PLW1   L8IQU7   A0A3P9KB75   A0A286XRH9   A0A147BPA0   B5X756   A0A0P7WDB2   A0A340Y6M1   E3TDW6   A0A2G9U682   A0A1W4Z174   A0A3Q2PQZ4   W5PZK3   A0A3Q1GDG7   A0A3Q1B443   A0A3P8UHQ8  

PDB

6IAE     E-value=6.91376e-08,     Score=131

KEGG

101741029    K07935 intraflagellar transport protein 22 | (RefSeq) intraflagellar transport protein 22 homolog

GO

GO:0005525   GO:0003924   GO:0032482   GO:0005623   GO:0006886   GO:0031514   GO:0005929   GO:0030992   GO:0005813   GO:0035735   GO:0097542   GO:0003723   GO:0042073   GO:0000151   GO:0006511   GO:0016567   GO:0004842   GO:0008565   GO:0015031   GO:0016020   GO:0016742   GO:0003824  

Subcellular location

  

Length:

175

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00122

Exp number, first 60 AAs:

0

Total prob of N-in:

0.09691

outside

1  -  175

 

 

Pi

337.757962

Theta

207.966228

Tajima's D

2.012605

CLR

0.129886

CSRT

0.888355582220889

Interpretation

Uncertain