SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04545
Pre Gene Modal
BGIBMGA005467
Annotation
PREDICTED:_uncharacterized_protein_LOC106136424_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.646
 

Sequence

CDS
ATGAAGAATTGTAACCTGTGCAAGATCCAATTCAGTGATGGTGTTCAATGCGGTACGTGCAAGAAGCATTTTGACTTCGGATGCGCTAATATTACAGAAGCTGGATATAGAAAACTGGGCCCCGAAAGAAGGGCGGCATGGAAGTGTTCTGCTTGCAGAAACCCTTCGCAAGCGGTTGCTTCACAGGCCAGCCCAGTCTCTCCAGTTCAGGGCTTAGTGACGCTAGAAATGATCCACGCTGAATTATGCGGCGTCAAAACGAAACTAAATAGTTTATCTCTGCTGCATCAGGAAGTAATAAATATACGTGAAGAACTGTCATTGCTGCGTGAGTCCGTCACTCAAAACATAGAAAAGGTATCTGAGTGTGACGCTAGGCTTATTGAGATTGAAAGCAAGCTCCCAGTGATTGAGCGTACTCAGTCGTCTGTTGAATGTCTTGAATCAGCGATGCGGAAAATGCAGGGAAAGATCGATGCTTTGGAGCAGAGAGCCAGGCTTAATAATGTCGAGATCAAGGGCGTTCCTGTAAGGAAGAACGAAAACCTTTTTACAATCGTCGAGAACATCTCCCAGAGGCTGGGCGTGTCCTTTTCCAGGGCAGACATTAACCATGTTACGAGGGTGCCTACATTTGGATCGGCTGACAAACTCATCATACTAAACTTCCACAATAGGTACACAAAGGAAGATTTTGTCGCCGCTGCTCGTGCACTAAAATTTCTTAATGCCCAGGACATTGGTTTTACTGTTTCTAATCGTATTTTCGTGAATGACCACCTGACTCGTGATACGAAACAACTTCTCACAAAAGTGAAAACATGGGCCAAAAACAAGAATTTTAAGTACATTTGGGTTAAGTTCTGTAAGATCCATGTGCGAAGATCTGACTCGTCTCCGGTTATTATAGTACATACAGAGGCAGATTTAAACAAATTGACTTAG
Protein
MKNCNLCKIQFSDGVQCGTCKKHFDFGCANITEAGYRKLGPERRAAWKCSACRNPSQAVASQASPVSPVQGLVTLEMIHAELCGVKTKLNSLSLLHQEVINIREELSLLRESVTQNIEKVSECDARLIEIESKLPVIERTQSSVECLESAMRKMQGKIDALEQRARLNNVEIKGVPVRKNENLFTIVENISQRLGVSFSRADINHVTRVPTFGSADKLIILNFHNRYTKEDFVAAARALKFLNAQDIGFTVSNRIFVNDHLTRDTKQLLTKVKTWAKNKNFKYIWVKFCKIHVRRSDSSPVIIVHTEADLNKLT

Summary

EMBL
BABH01013843    JTDY01017795    JTDY01002629    KOB51833.1    KOB71066.1    JTDY01009133    + More
KOB64064.1    JTDY01001364    KOB74072.1    JTDY01000621    KOB76444.1    NWSH01004950    PCG64556.1    JTDY01010706    KOB58083.1    KQ459592    KPI96861.1    KOB71067.1    NWSH01003729    PCG65877.1    ODYU01008832    SOQ52780.1    KZ150018    PZC74933.1    ODYU01007576    SOQ50461.1    NWSH01000216    PCG78307.1    JTDY01000967    KOB75255.1    NWSH01001977    PCG69519.1    JTDY01013395    KOB52145.1    NWSH01001181    PCG72223.1    JTDY01004228    KOB68423.1    JTDY01000335    KOB77651.1    ODYU01006867    SOQ49096.1    KZ149893    PZC78914.1    BABH01022797    BABH01022798    BABH01022799    BABH01022800    BABH01022801    BABH01022802    NWSH01000638    PCG75103.1    JTDY01001455    KOB73826.1    JTDY01015045    KOB51976.1    GBHO01033077    JAG10527.1    JTDY01006445    KOB66006.1    KQ459054    KPJ03878.1    NWSH01004492    PCG65047.1    ODYU01012701    SOQ59142.1    NWSH01005158    PCG64392.1    KZ150150    PZC72841.1    JTDY01008292    KOB64643.1    NWSH01000633    PCG75137.1    JTDY01001653    KOB73242.1    GEZM01055774    GEZM01055773    JAV72944.1    NWSH01000830    PCG73963.1    KQ461154    KPJ08619.1    LADJ01030744    KPJ21224.1    NWSH01000125    PCG79301.1    GEZM01021253    JAV89053.1    KZ150197    PZC72320.1    GDQN01004260    JAT86794.1    JTDY01006205    KOB66199.1    GEZM01097808    JAV54094.1    ODYU01008890    SOQ52873.1    ODYU01010507    SOQ55661.1    BABH01014938    NWSH01002730    PCG67615.1    ODYU01001084    SOQ36825.1    ABLF02031642    ABLF02031648    ABLF02031649    GFWV01006510    MAA31240.1    NWSH01007563    PCG62908.1    GEZM01076104    JAV63822.1    GGMS01012870    MBY82073.1    GECU01002092    JAT05615.1    NWSH01002711    PCG67639.1    ABLF02019813    ODYU01007238    SOQ49844.1   
Pfam
PF03258   Baculo_FP        + More
PF04184   ST7
PF14529   Exo_endo_phos_2
PF00078   RVT_1
Interpro
IPR004244   Transposase_22        + More
IPR004941   Baculo_FP       
IPR013083   Znf_RING/FYVE/PHD       
IPR011011   Znf_FYVE_PHD       
IPR001965   Znf_PHD       
IPR007311   ST7       
IPR019787   Znf_PHD-finger       
IPR019786   Zinc_finger_PHD-type_CS       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR001841   Znf_RING       
IPR000477   RT_dom       
SUPFAM
SSF57903   SSF57903        + More
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
314
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00374
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.11373
outside
1  -  314
 
 

Population Genetic Test Statistics

Pi
111.190675
Theta
63.244879
Tajima's D
1.298951
CLR
0
CSRT
0.736413179341033
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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