SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04540
Pre Gene Modal
BGIBMGA005464
Annotation
PREDICTED:_trafficking_protein_particle_complex_subunit_13-like_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 1.834 Nuclear   Reliability : 1.562
 

Sequence

CDS
ATGGATCCAAAAGAAGCGGTTGAACATTTAGTTGCTCTGAAGGTGATGAGACTTACAAAGCCAGCATTGATAAGCCCTAATATCGTCACTTGTGACTCAAAAGATTTGCCAGGTAATATTCTCAATAATTATCTAAAAGATGATGCCACAGCAGTCAGTCAAATGGAAACTCTTGCTGCTGGACAATTCTTACTACTTCCTCAAAGTTTTGGAAATATTTATTTAGGGGAAACATTCTCTTGTTATGTTTGTGTTCACAATGAAACGAATCAACCTGTACAAAGTGTCTCCATAATAACTAGTCTACAAACTAATTCACAAAGAATAGAGCTTACAGCACAGGAGGGAACTACCCCTACTATGTTGGATGTTGATGAAACCCTTAGTGATGTTATTCACCATGAGGTCAAAGATTTAGGAACACATATATTAGTATGTGAAGTTTCGTACATGTCCAACTACAATACGTTAGCATCGTTCCGGAAATTCTTCAAATTTGAAGTCATGAAACCACTAGATGTGAAAACTAAATTTTATAATGCTGAATCAGGGGATATTTATCTTGAAGCACAAGTTCACAACATAACATCTGGGCCCATTATATTTGAGCAAGTATCTTTGGAAAGTTCTCAGCAATTCACTGTAAGTTCTTTGAATGAAGTGAATGGTGAGTCAGTGTTTGGTGAAGTGACATTATTACAGCCACAAGAGAGCTGTCAGTTCTTGTACTGGCTTAAACCAAAGGAAAACATGGCAAAAGAAGTCAAACCACATGGCCCTATGAGAAATATTGGAAAACTAGATATAGTCTGGAGGTCTAACTTAGGTGAGAAAGGCCGATTACAGACTAGTCAGTTGGAAGCCATGGCACTCGATCATGACGACTTAAGACTGACAGTTGAACAAATTCCTAGTAAAGTATGTGCAGATGAAGCTTTCACATTTAAATGTAAAGTTGTGAATGCCAGTGAAAGAACTTTAGATCTCATATTAAAACTGCGTTCTCCGCAAGACTCTAGTCTCCTATGGTGCGGAATTTCTAACAGAAAATTAGGGCCTCTAGAACCCGGAAAGACAACATTCATAAATTTAACTGCTTTACCAATCAACACAGGCTTACAGAAAGTGACTGGTGTGTCACTTGTTGATTTGTTTTTAAAACGCACTTATGATTATGATCATTTAGCTTCAGTTTATGTATATTAA
Protein
MDPKEAVEHLVALKVMRLTKPALISPNIVTCDSKDLPGNILNNYLKDDATAVSQMETLAAGQFLLLPQSFGNIYLGETFSCYVCVHNETNQPVQSVSIITSLQTNSQRIELTAQEGTTPTMLDVDETLSDVIHHEVKDLGTHILVCEVSYMSNYNTLASFRKFFKFEVMKPLDVKTKFYNAESGDIYLEAQVHNITSGPIIFEQVSLESSQQFTVSSLNEVNGESVFGEVTLLQPQESCQFLYWLKPKENMAKEVKPHGPMRNIGKLDIVWRSNLGEKGRLQTSQLEAMALDHDDLRLTVEQIPSKVCADEAFTFKCKVVNASERTLDLILKLRSPQDSSLLWCGISNRKLGPLEPGKTTFINLTALPINTGLQKVTGVSLVDLFLKRTYDYDHLASVYVY

Summary

EMBL
BABH01013840    KZ149904    PZC78391.1    ODYU01000234    SOQ34657.1    GDQN01007913    + More
GDQN01000738    JAT83141.1    JAT90316.1    GAIX01012049    JAA80511.1    JTDY01000070    KOB79047.1    AGBW02013261    OWR43808.1    KQ459599    KPI94395.1    KQ461154    KPJ08467.1    NEVH01021208    PNF19837.1    KK852880    KDR14425.1    PNF19839.1    AXCN02000986    GECU01026950    JAS80756.1    KQ971352    EFA07324.1    BT127141    AEE62103.1    ATLV01024126    KE525349    KFB50763.1    GGFM01004833    MBW25584.1    GGFJ01005646    MBW54787.1    GGFK01010005    MBW43326.1    GBYB01008571    JAG78338.1    JXUM01137137    KQ568531    KXJ68972.1    ADMH02000542    ETN65994.1    APCN01004270    LJIG01022907    KRT78119.1    AAAB01008960    EAA11831.3    GL442691    EFN63179.1    KZ288189    PBC34686.1    NNAY01001524    OXU23699.1    AXCM01016355    CH477294    CH477196    EAT44427.1    EAT48368.1    DS231885    EDS43202.1    KQ976440    KYM86604.1    ADTU01005245    KK107139    QOIP01000003    EZA57732.1    RLU24983.1    GEZM01004708    JAV96327.1    KQ982074    KYQ60454.1    GL888624    EGI58830.1    GFDL01011503    JAV23542.1    KQ977394    KYN03033.1    KQ434879    KZC09941.1    KQ414591    KOC70283.1    GL451420    EFN79377.1    GG666631    EEN47385.1    GEZM01004709    JAV96326.1    KQ981856    KYN34547.1    KQ979955    KYN18517.1    LMAW01002889    KQK76010.1    GFDL01011552    JAV23493.1    KZ506399    PKU39825.1    GGLE01000507    MBY04633.1    MUZQ01000025    OWK62524.1    AKHW03004724    KYO29184.1    AGTO01020873    GFWV01002865    MAA27595.1    ABJB011052101    DS906639    EEC16502.1    KB030673    ELK11395.1    KYO29185.1    AGTP01014028    AGTP01014029    AEFK01050382    AEFK01050383    AEFK01050384    GEFM01003888    JAP71908.1    HADW01004923    HADX01007237    SBP06323.1    AC145935    AC187110    ABQF01033291    ABQF01033292    ABQF01033293    AGCU01045555    AGCU01045556    AGCU01045557    NDHI03003409    PNJ61015.1    AJWK01028329   
Pfam
PF06159   DUF974
Interpro
IPR010378   TRAPPC13       

Ontologies

GO

Topology

Length:
401
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04285
Exp number, first 60 AAs:
0.00152
Total prob of N-in:
0.00452
outside
1  -  401
 
 

Population Genetic Test Statistics

Pi
59.491597
Theta
126.942516
Tajima's D
-1.867312
CLR
158.640572
CSRT
0.0247487625618719
Interpretation
Uncertain
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