Gene

KWMTBOMO04534  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005462

Annotation

PREDICTED:_NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_6-like_[Amyelois_transitella]

Location

Bomo_Chr8(+):9341617-9343346      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.323

CDS

ATGTCTGCAAGGCAGGCAATAAAAGTTGGTACAAAAACCGTAAAACCAGTACTATCGTCGTCTCATGCTGAAGCTCGGAATAGAGTTCTGAGTCTTTACAAAGCATGGTATCGTCAGATCCCCTATATAGTGAAGGATTATGACATTCCCAAGTCAGAAGCACAATGTCGAGAGAAATTGAAAGAACTCTTCATTAAGAACAAACATGTGACTGATATTCGAGTCATTGATATGCTGGTTATTAAGGGTCAAATGGAGTTGAAAGAGTCGGTGAACATATGGAAACAAAAGGGGCACATTATGGCCTACTTCAAACCAACAGAAGAACCTAAACCAAAAAATTTCCTTTCGAAATTCTTTTCTGGAAACGAATGA

Protein

MSARQAIKVGTKTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFFSGNE

Similarity

Belongs to the complex I LYR family.
Belongs to the tetraspanin (TM4SF) family.

Uniprot

H9J7H0   S4P9V1   A0A212EJF9   I4DK69   A0A194PLT7   A0A2W1BYS3   + More
A0A2H1VYZ0   A0A194QSJ9   A0A1E1W373   A0A182FPE2   A0A1B0CJY0   A0A2M3Z512   A0A2P8Z6T4   A0A1Q3FL65   A0A0L7LUQ5   A0A336KWV3   A0A182VXQ7   A0A182RJ79   A0A336M644   A0A182GAU6   A0A182XXA2   A0A2M4C3K4   T1DKV1   A0A023EDZ8   A0A182QQJ1   Q17Q29   A0A182PBG8   A0A182KK73   A0A182XKF2   A0A182KFR6   B0WQF7   W5JGV3   A0A1L8E0P9   A0A182NLA0   A0A2M4AEF7   Q7QM15   A0A182IKX4   Q7Q9C1   A0A182HJJ2   A0A182UXX9   A0A2J7QDN1   A0A182M072   B4MRY0   Q28ZU9   B4LJC1   A0A1B0CZR5   B4JVZ0   A0A1A9URC8   A0A1A9Z2G6   B4P7M4   B3NN29   A0A3B0JNX9   T1PFB1   A0A1B0FK01   D1FQ06   A0A1W4WSQ1   A0A1L8EER1   A0A1A9WWU7   A0A1I8QAR8   A0A1A9YL53   A0A069DMX4   B3MCS3   B4NSC9   Q7JZK1   A0A1W4VCJ1   A0A0A9WBQ8   B4HN24   A0A0M4ETG2   N6U0D3   B4GGR1   B4KTT1   A0A0N7Z9G2   R4FPF4   U4U7N1   A0A161MLJ2   W8C2I8   A0A1B0C5E2   A0A0P4WG23   A0A2R7WG33   A0A0P5FVM7   A0A162QNW1   A0A0V0G6U0   A0A0L0C5I4   A0A0N8BP27   A0A0P6F0P7   A0A023F825   A0A0K8V405   A0A0P5F9X0   A0A0P5MI13   A0A0P5NJT7   A0A226EDV4   A0A034VMX7   D7EHX8   A0A3R7N0B5   A0A0P6JXI5   A0A0P5D5G1   A0A0P5KCS9   A0A0P5EQ33   A0A0P5M2C4   A0A0P5DPX8  

Pubmed

19121390    23622113    22118469    22651552    26354079    28756777    + More
29403074    26227816    26483478    25244985    24945155    17510324    26999592    20966253    20920257    23761445    9087549    12364791    14747013    17210077    17994087    15632085    17550304    25315136    26334808    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25401762    26823975    23537049    27129103    24495485    26108605    25474469    25348373    18362917    19820115   

EMBL

BABH01013834    GAIX01003559    JAA89001.1    AGBW02014484    OWR41600.1    AK401687    + More
BAM18309.1    KQ459599    KPI94401.1    KZ149904    PZC78387.1    ODYU01005326    SOQ46060.1    KQ461154    KPJ08462.1    GDQN01009629    JAT81425.1    AJWK01015524    AJWK01015525    GGFM01002858    MBW23609.1    PYGN01000170    PSN52207.1    GFDL01006695    JAV28350.1    JTDY01000051    KOB79165.1    UFQS01000611    UFQT01000611    SSX05370.1    SSX25731.1    SSX05365.1    SSX25726.1    JXUM01008769    JXUM01008770    KQ560268    KXJ83442.1    GGFJ01010742    MBW59883.1    GAMD01000766    JAB00825.1    GAPW01006061    JAC07537.1    AXCN02000114    CH477187    GDUN01001025    EAT48887.1    JAN94894.1    DS232039    EDS32828.1    ADMH02001538    ETN62135.1    GFDF01001803    JAV12281.1    GGFK01005829    MBW39150.1    AAAB01005603    EAA02579.3    AAAB01008904    EAA09633.5    APCN01002170    NEVH01015817    PNF26688.1    AXCM01015740    CH963850    EDW74869.1    CM000071    EAL25513.1    CH940648    EDW60501.1    AJVK01009695    CH916375    EDV98128.1    CM000158    EDW90059.1    CH954179    EDV56549.1    OUUW01000001    SPP75036.1    KA647431    AFP62060.1    CCAG010020733    EZ419906    ACZ28261.1    GFDG01001633    JAV17166.1    GBGD01003486    JAC85403.1    CH902619    EDV37325.1    CH982158    CH982159    CM002911    EDX15507.1    EDX15511.1    KMY92889.1    AE013599    AY071209    AAF58729.1    AAL48831.1    AGB93410.1    GBHO01038768    GBRD01004963    GDHC01004245    JAG04836.1    JAG60858.1    JAQ14384.1    CH480816    EDW47328.1    CP012524    ALC40532.1    APGK01044294    APGK01044295    KB741022    ENN74995.1    CH479183    EDW35681.1    CH933808    EDW10657.1    GDKW01000635    JAI55960.1    ACPB03020118    GAHY01000909    JAA76601.1    KB631843    ERL86631.1    GEMB01002303    JAS00878.1    GAMC01006524    JAC00032.1    JXJN01025945    GDRN01027129    JAI67659.1    KK854775    PTY18603.1    GDIQ01251117    JAK00608.1    LRGB01000311    KZS19835.1    GECL01002451    JAP03673.1    JRES01000890    KNC27545.1    GDIQ01158843    JAK92882.1    GDIQ01055384    JAN39353.1    GBBI01001328    JAC17384.1    GDHF01019019    JAI33295.1    GDIQ01261207    JAJ90517.1    GDIQ01158844    JAK92881.1    GDIQ01141202    JAL10524.1    LNIX01000004    OXA55589.1    GAKP01015138    GAKP01015136    GAKP01015135    JAC43814.1    KQ971323    KYB28574.1    QCYY01001978    ROT73863.1    GDIQ01004446    JAN90291.1    GDIP01160959    JAJ62443.1    GDIQ01187533    JAK64192.1    GDIP01253293    GDIQ01268918    JAI70108.1    JAJ82806.1    GDIQ01170535    JAK81190.1    GDIP01156612    JAJ66790.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000053240    UP000069272    UP000092461    + More
UP000245037    UP000037510    UP000075920    UP000075900    UP000069940    UP000249989    UP000076408    UP000075886    UP000008820    UP000075885    UP000075882    UP000076407    UP000075881    UP000002320    UP000000673    UP000075884    UP000007062    UP000075880    UP000075840    UP000075903    UP000235965    UP000075883    UP000007798    UP000001819    UP000008792    UP000092462    UP000001070    UP000078200    UP000092445    UP000002282    UP000008711    UP000268350    UP000095301    UP000092444    UP000192223    UP000091820    UP000095300    UP000092443    UP000007801    UP000000304    UP000000803    UP000192221    UP000001292    UP000092553    UP000019118    UP000008744    UP000009192    UP000015103    UP000030742    UP000092460    UP000076858    UP000037069    UP000198287    UP000007266    UP000283509   

PRIDE

H9J7H0    Q7JZK1   

Pfam

PF05347   Complex1_LYR        + More
PF11708   Slu7
PF00335   Tetraspanin

Interpro

IPR016488   NADH_Ub_cplx-1_asu_su-6        + More
IPR008011   Complex1_LYR       
IPR021715   Slu7_dom       
IPR018499   Tetraspanin/Peripherin       
IPR008952   Tetraspanin_EC2_sf       

SUPFAM

SSF48652   SSF48652       

Gene 3D

1.10.1450.10    

ProteinModelPortal

H9J7H0   S4P9V1   A0A212EJF9   I4DK69   A0A194PLT7   A0A2W1BYS3   + More
A0A2H1VYZ0   A0A194QSJ9   A0A1E1W373   A0A182FPE2   A0A1B0CJY0   A0A2M3Z512   A0A2P8Z6T4   A0A1Q3FL65   A0A0L7LUQ5   A0A336KWV3   A0A182VXQ7   A0A182RJ79   A0A336M644   A0A182GAU6   A0A182XXA2   A0A2M4C3K4   T1DKV1   A0A023EDZ8   A0A182QQJ1   Q17Q29   A0A182PBG8   A0A182KK73   A0A182XKF2   A0A182KFR6   B0WQF7   W5JGV3   A0A1L8E0P9   A0A182NLA0   A0A2M4AEF7   Q7QM15   A0A182IKX4   Q7Q9C1   A0A182HJJ2   A0A182UXX9   A0A2J7QDN1   A0A182M072   B4MRY0   Q28ZU9   B4LJC1   A0A1B0CZR5   B4JVZ0   A0A1A9URC8   A0A1A9Z2G6   B4P7M4   B3NN29   A0A3B0JNX9   T1PFB1   A0A1B0FK01   D1FQ06   A0A1W4WSQ1   A0A1L8EER1   A0A1A9WWU7   A0A1I8QAR8   A0A1A9YL53   A0A069DMX4   B3MCS3   B4NSC9   Q7JZK1   A0A1W4VCJ1   A0A0A9WBQ8   B4HN24   A0A0M4ETG2   N6U0D3   B4GGR1   B4KTT1   A0A0N7Z9G2   R4FPF4   U4U7N1   A0A161MLJ2   W8C2I8   A0A1B0C5E2   A0A0P4WG23   A0A2R7WG33   A0A0P5FVM7   A0A162QNW1   A0A0V0G6U0   A0A0L0C5I4   A0A0N8BP27   A0A0P6F0P7   A0A023F825   A0A0K8V405   A0A0P5F9X0   A0A0P5MI13   A0A0P5NJT7   A0A226EDV4   A0A034VMX7   D7EHX8   A0A3R7N0B5   A0A0P6JXI5   A0A0P5D5G1   A0A0P5KCS9   A0A0P5EQ33   A0A0P5M2C4   A0A0P5DPX8  

PDB

5GUP     E-value=2.66468e-31,     Score=331

KEGG

101738229    K03950 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6 | (RefSeq) NADH dehydrogenase [u

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0006979   GO:0005747   GO:0006120   GO:0003954   GO:0005739   GO:0016021   GO:0008137  

PANTHER

PTHR12964  

Length:

124

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.36018

outside

1  -  124

 

 

Pi

319.901525

Theta

206.348953

Tajima's D

1.457888

CLR

0

CSRT

0.771661416929154

Interpretation

Uncertain