Gene

KWMTBOMO04529  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005347

Annotation

ADP-ribosylation_factor_[Bombyx_mori]

Location

Bomo_Chr8(-):9293848-9301306      View in EpiBrowser

Full name

ADP-ribosylation factor 1      

Alternative Name

lARF1

Location in the cell

Mitochondrial   Reliability : 1.077

CDS

ATGGGGAATATGTTTGCGAATTTATTTAAAGGCCTTTTTGGCAAAAAGGAAATGAGAATATTGATGGTTGGTTTGGATGCAGCTGGTAAAACCACAATTCTGTACAAACTCAAATTAGGTGAAATTGTAACAACAATTCCCACTATTGGCTTTAATGTGGAGACAGTAGAATACAAAAACATTAGTTTTACTGTGTGGGATGTTGGAGGCCAAGACAAAATCAGACCACTGTGGAGGCATTATTTCCAAAATACACAGGGTCTAATCTTCGTAGTAGACAGTAACGATCGGGAACGTATCGGCGAGGCACGCGAAGAGCTCATGAGGATGCTCAGCGAAGATGAACTACGGGATGCAGTACTTTTGATCTTTGCGAATAAACAGGATTTGCCAAACGCAATGAACGCAGCCGAGATAACAGACAAACTGGGTCTGCATTCGCTGCGCAACCGTAACTGGTACATCCAAGCGACATGCGCCACTTCCGGAGACGGACTGTACGAGGGTCTCGACTGGCTCTCCAATCAGCTCAAGAACGCCAACCGCTAA

Protein

MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR

Description

GTP-binding protein involved in protein trafficking; has a role in Golgi organization and may modulate vesicle budding and uncoating within the Golgi apparatus (Probable). Has a role in eye development (PubMed:21976699). Required for cleavage furrow ingression in embryonic cells (PubMed:27535433).

Similarity

Belongs to the small GTPase superfamily. Arf family.

Keywords

ER-Golgi transport   Golgi apparatus   GTP-binding   Lipoprotein   Myristate   Nucleotide-binding   Protein transport   Transport   Complete proteome   Cytoplasm   Reference proteome  

Feature

chain  ADP-ribosylation factor 1

Uniprot

G8EI89   A0A2W1C2L5   I4DMK2   A0A194QSJ4   A0A1E1WU13   A0A2H1VH34   + More
S4PYE2   A0A3G1T1B7   Q2F6C7   I4DIZ6   A0A3S2TPD8   A0A336MIK1   A0A165VG10   A0A0A9W9C0   A0A212EJE4   R4WIS6   I7EDT1   A0A1L8DVV2   A0A1A9XBJ6   A0A3B0JZ91   T1D507   T1DHQ3   A0A1Q3G2M2   M9PG22   B4GRC0   U5EXG4   A0A2J7PTR4   A0A182YCG7   A0A067RH94   A0A1B0EXG2   B4N532   A0A0L0CRL9   B4IB53   B4J3R8   A0A2M3ZG11   A0A1A9Z3L7   A0A2M4A386   A0A0K8TR20   A0A1B0CJR5   B4QLB5   A0A1W4USS4   A0A182LX30   A0A182PLZ8   A0A1A9UXW0   A0A182TBC3   A0A182QWY5   B4KYK8   B3NEG6   A0A182UQW3   Q2M0P5   W8B2M7   W5JDH6   A0A182NPU8   B0WAT5   B3MB97   A0A1I8M7X4   A0A182UHW2   A0A182W279   D3TLZ1   Q1HR73   A0A084VKX8   B4LDP7   A0A182X7X4   A0A182IMT8   A0A182KYC3   Q7PZP1   A0A182FUK9   B4PIR1   A0A182RY39   A0A182HHU5   A0A182HDH0   P61210   P61209   A0A1B6ILG8   T1JAZ4   D5I1P3   E9IB24   F4X4X0   K7JAH0   A0A2A3ETJ6   A0A0N0BL06   A0A088A5A6   A0A195ET79   A0A0C9QPG5   E2BY37   A0A158NVW7   A0A310SLP5   V9IE13   A0A026X2R5   A0A1I8P301   A0A1L8EGW1   A0A224XXW4   A0A0P4VL22   A0A0V0G4R2   A0A171B3G9   E2J7F3   A0A069DPJ5   R4FMZ3   A0A0A1X414   A0A3R7MW78  

Pubmed

28756777    22651552    26354079    23622113    19121390    27538518    + More
25401762    26823975    22118469    23691247    24330624    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17994087    25244985    24845553    26108605    26369729    22936249    18057021    15632085    23185243    24495485    20920257    23761445    25315136    20353571    17204158    17510324    24438588    20966253    12364791    14747013    17210077    17550304    26483478    11122465    8507638    12537569    21976699    27535433    20713160    21282665    21719571    20075255    20798317    21347285    24508170    30249741    27129103    26334808    25830018   

EMBL

JF915770    AET74048.1    KZ149904    PZC78383.1    AK402520    BAM19142.1    + More
KQ461154    KPJ08457.1    GDQN01000515    JAT90539.1    ODYU01002287    SOQ39574.1    GAIX01003443    JAA89117.1    MG846926    AXY94778.1    BABH01013828    DQ311145    ABD36090.1    AK401264    KQ459599    BAM17886.1    KPI94406.1    RSAL01000032    RVE51549.1    UFQT01001374    SSX30252.1    KT984804    KU932396    AMZ00356.1    APA34032.1    GBHO01039205    GBRD01011691    GDHC01007872    JAG04399.1    JAG54133.1    JAQ10757.1    AGBW02014484    OWR41595.1    AK417370    BAN20585.1    JX046920    AFO83996.1    GFDF01003517    JAV10567.1    OUUW01000012    SPP87397.1    GALA01000743    JAA94109.1    GAMD01002226    JAA99364.1    GFDL01001039    JAV34006.1    AE014296    AGB94918.1    CH479188    EDW40305.1    GANO01000968    JAB58903.1    NEVH01021221    PNF19728.1    KK852507    KDR22418.1    AJVK01013552    AJVK01013553    CH964101    EDW79471.1    JRES01000005    KNC34978.1    CH480826    EDW44516.1    CH916366    EDV97299.1    GGFM01006670    MBW27421.1    GGFK01001926    MBW35247.1    GDAI01001243    JAI16360.1    AJWK01014890    CM000363    CM002912    EDX11533.1    KMZ01243.1    AXCM01002821    AXCN02001676    CH933809    EDW18819.1    KRG06378.1    CH954178    EDV52801.1    KQS44443.1    KQS44444.1    CH379069    EAL30885.1    KRT07736.1    KRT07737.1    GAMC01011161    GAMC01011160    JAB95395.1    ADMH02001479    GGFL01004224    ETN62397.1    MBW68402.1    DS231875    EDS41801.1    CH902618    EDV41398.1    KPU79091.1    CCAG010018371    EZ422443    ADD18719.1    DQ440221    CH477418    ABF18254.1    EAT41274.1    ATLV01014310    KE524956    KFB38622.1    CH940647    EDW70008.1    KRF84669.1    AXCP01003861    AAAB01008986    EAA00461.2    CM000159    EDW95569.1    KRK02519.1    KRK02520.1    KRK02521.1    APCN01002444    JXUM01129668    JXUM01129669    KQ567480    KXJ69409.1    U90609    S62079    AY060375    GECU01019950    JAS87756.1    JH432007    GQ483535    ADE42873.1    GL762106    EFZ22216.1    GL888679    EGI58543.1    AAZX01000186    AAZX01000188    AAZX01005723    AAZX01010956    AAZX01011092    AAZX01015773    KZ288191    PBC34469.1    KQ435687    KOX81342.1    KQ981993    KYN31117.1    GBYB01005504    JAG75271.1    GL451420    EFN79316.1    ADTU01027564    KQ759893    OAD62064.1    JR039423    JR039424    AEY58690.1    AEY58691.1    KK107020    QOIP01000006    EZA62585.1    RLU21855.1    GFDG01000960    JAV17839.1    GFTR01003024    JAW13402.1    GDKW01000776    JAI55819.1    GECL01003741    JAP02383.1    GEMB01000320    JAS02800.1    HP429371    ADN29871.1    GBGD01003139    JAC85750.1    ACPB03019847    GAHY01000768    JAA76742.1    GBXI01013075    GBXI01012576    GBXI01008671    JAD01217.1    JAD01716.1    JAD05621.1    QCYY01002331    ROT71202.1   

Proteomes

UP000053240    UP000005204    UP000053268    UP000283053    UP000007151    UP000092443    + More
UP000268350    UP000000803    UP000008744    UP000235965    UP000076408    UP000027135    UP000092462    UP000007798    UP000037069    UP000001292    UP000001070    UP000092445    UP000092461    UP000000304    UP000192221    UP000075883    UP000075885    UP000078200    UP000075901    UP000075886    UP000009192    UP000008711    UP000075903    UP000001819    UP000000673    UP000075884    UP000002320    UP000007801    UP000095301    UP000075902    UP000075920    UP000092444    UP000008820    UP000030765    UP000008792    UP000076407    UP000075880    UP000075882    UP000007062    UP000069272    UP000002282    UP000075900    UP000075840    UP000069940    UP000249989    UP000007755    UP000002358    UP000242457    UP000053105    UP000005203    UP000078541    UP000008237    UP000005205    UP000053097    UP000279307    UP000095300    UP000015103    UP000283509   

PRIDE

Q2F6C7    M9PG22    P61210    P61209    A0A088A5A6   

Pfam

PF00025   Arf

Interpro

IPR027417   P-loop_NTPase        + More
IPR005225   Small_GTP-bd_dom       
IPR006689   Small_GTPase_ARF/SAR       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

G8EI89   A0A2W1C2L5   I4DMK2   A0A194QSJ4   A0A1E1WU13   A0A2H1VH34   + More
S4PYE2   A0A3G1T1B7   Q2F6C7   I4DIZ6   A0A3S2TPD8   A0A336MIK1   A0A165VG10   A0A0A9W9C0   A0A212EJE4   R4WIS6   I7EDT1   A0A1L8DVV2   A0A1A9XBJ6   A0A3B0JZ91   T1D507   T1DHQ3   A0A1Q3G2M2   M9PG22   B4GRC0   U5EXG4   A0A2J7PTR4   A0A182YCG7   A0A067RH94   A0A1B0EXG2   B4N532   A0A0L0CRL9   B4IB53   B4J3R8   A0A2M3ZG11   A0A1A9Z3L7   A0A2M4A386   A0A0K8TR20   A0A1B0CJR5   B4QLB5   A0A1W4USS4   A0A182LX30   A0A182PLZ8   A0A1A9UXW0   A0A182TBC3   A0A182QWY5   B4KYK8   B3NEG6   A0A182UQW3   Q2M0P5   W8B2M7   W5JDH6   A0A182NPU8   B0WAT5   B3MB97   A0A1I8M7X4   A0A182UHW2   A0A182W279   D3TLZ1   Q1HR73   A0A084VKX8   B4LDP7   A0A182X7X4   A0A182IMT8   A0A182KYC3   Q7PZP1   A0A182FUK9   B4PIR1   A0A182RY39   A0A182HHU5   A0A182HDH0   P61210   P61209   A0A1B6ILG8   T1JAZ4   D5I1P3   E9IB24   F4X4X0   K7JAH0   A0A2A3ETJ6   A0A0N0BL06   A0A088A5A6   A0A195ET79   A0A0C9QPG5   E2BY37   A0A158NVW7   A0A310SLP5   V9IE13   A0A026X2R5   A0A1I8P301   A0A1L8EGW1   A0A224XXW4   A0A0P4VL22   A0A0V0G4R2   A0A171B3G9   E2J7F3   A0A069DPJ5   R4FMZ3   A0A0A1X414   A0A3R7MW78  

PDB

1RRG     E-value=3.30251e-97,     Score=902

KEGG

778456    K07937 ADP-ribosylation factor 1 | (RefSeq) ADP-ribosylation factor

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0005525   GO:0016021   GO:0010883   GO:0045807   GO:0045177   GO:0043001   GO:0003924   GO:0032154   GO:0005795   GO:1904801   GO:0007112   GO:1990386   GO:0032011   GO:1902036   GO:0001745   GO:0005794   GO:0016192   GO:0015031   GO:0006892   GO:0098793   GO:0048488   GO:0007269   GO:0005829   GO:0005737   GO:0048749   GO:0017111   GO:0005622   GO:0007264   GO:0016887   GO:0030870   GO:0006310   GO:0006418   GO:0009058   GO:0016742   GO:0003824  

Subcellular location

Golgi apparatus  
Cytoplasm   Localization to the Golgi is dependent on Asap.   With evidence from 4 publications.
Cytosol   Localization to the Golgi is dependent on Asap.   With evidence from 4 publications.

Length:

182

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04704

Exp number, first 60 AAs:

0.04444

Total prob of N-in:

0.06579

outside

1  -  182

 

 

Pi

188.443725

Theta

203.72662

Tajima's D

0.30299

CLR

0.208195

CSRT

0.457677116144193

Interpretation

Uncertain