Gene

KWMTBOMO04525

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr8(+):9035828-9038402      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.688 Nuclear   Reliability : 2.151

CDS

ATGCCTCCCCTCGTACGCCCTTCAGGCCAACCACCGGCATTCGATGACGATGACAAGGCTGAGCTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGAACCCCGAACACACCGAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCCGGCTCCGACGGCATCCGCAACCGCGCGCTAAAACTCTTGCCAGTCCAACTGATAGCAATGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAATTCTCATAGACGAACAGTTCGGATTCCGCTCTAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATCCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGACATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTAATTTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCAACTGACTGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGCTGCTTCATCGGCGACTCCAGATCGCAGTAGCCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAATACCACTTCGAGCATCCCACTCCCTAATAGGCGCGCAAACACCTCCGCCGTTAGCCCCGTCACTCTCTTTGGCCAGCCCATACCGTGGGCCTCGCAGGTCAAATACCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCATATTAAAACGGTACGCGACCGTGCCGCCTTCATATTAGGACGTCTCTACCCTATGCTTTGCAAGCGAAGCAAACTGTCCCTCCGTAATAAGGTAACTCTCTACAAAACTTGCATACGCCCCGTTATGACGTATGCAAGCGTAGTGTTCGCTCACGCAGCCCGCACCAACTTGAAGCCCCTTCAGGTTATTCAATCCCGATTCTGCAGGATAGCCGTCGGAGCACCATGGTTCCTGAGGAACGTGGATCTCCACGATGACCTGGAGCTTGACTCTGTCAGTAAGTATCTACAGTCGGCATCGCTGCGCCATTTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGTGCGGCAAACTAGATCCATAG

Protein

MPPLVRPSGQPPAFDDDDKAELLADALQEQCTTSTQHANPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIRNRALKLLPVQLIAMKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTSSIPLPNRRANTSAVSPVTLFGQPIPWASQVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCKRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKPLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSVSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMCGKLDP

Uniprot

Q9XXW0   Q9BPQ0   Q93137   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
A0A194Q1H8   O96546   O96544   V5GNF3   A0A139WA11   A0A1Y1NA23   A0A139W8G9   V5GNJ2   V5I850   X1WMU5   J9KKL3   A0A2S2PR14   X1WWC4   A0A2S2Q823   X1WXU3   A0A087T1W0   X1WLB2   A0A087U2S8   A0A224XF24   A0A2J7QQP1   J9KV82   A0A2J7RIW7   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q059   X1WL89   A0A2J7RB54   A0A2J7QUJ9   A0A2J7RRU8   A0A2J7RPU2   A0A2S2NGV8   A0A2J7RS77   A0A2J7PMP9   A0A2J7Q0Q6   A0A2J7R6U1   A0A2J7QFL0   A0A2J7R2E1   A0A2J7RKP3   A0A2J7QR37   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2S2PH29   A0A2J7QEZ4   A0A2J7PDS9   A0A2J7QY69   A0A2J7PBY3   A0A2J7Q5G9   A0A2S2PX53   A0A0L0CBP5   A0A2J7QAT1   A0A2J7PU96   A0A1Y1M7E9   A0A023EYS8   X1X5Q5   A0A0J7K4E0   J9KC83   A0A2J7Q2R1   A0A2J7R8R8   A0A2S2QJM7   A0A2S2N814   X1X928   A0A352X8G4   A0A2J7PDM0   A0A1Y1LKN6   A0A2H8TES1   A0A2S2QTZ8   A0A2J7PVE7   A0A2S2PPK8   A0A0A9Z4E6   A0A0A9YN51   A0A2A4K8E7   A0A2S2NJB5   A0A069DZL8   A0A023F6S4   A0A2S2Q383   A0A2H8TWD9   A0A2M4BD67   J9KCZ4   A0A069DZC5   A0A069DW01   A0A2J7R579   A0A023F742   A0A2S2RAN7   A0A2J7QPI2   A0A2M4BDV6   A0A2J7R4B1   A0A0J7MYU2   X1XGU0   A0A087T2T6  

Pubmed

10333566    23652563    26354079    10380107    18362917    19820115    + More
28004739    26108605    25474469    30148503    25401762    26334808   

EMBL

AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KC165845    AFY12622.1    KQ459265    KPJ02064.1    KQ459259    KPJ02068.1    KQ459580    KPI99178.1    AF081103    AAC72921.1    AF081101    AAC72919.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GALX01005300    JAB63166.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02029306    ABLF02029314    ABLF02060138    GGMR01019198    MBY31817.1    ABLF02003961    ABLF02059872    GGMS01004685    MBY73888.1    ABLF02008933    KK113014    KFM59099.1    ABLF02042518    ABLF02057746    KK117880    KFM71667.1    GFTR01008038    JAW08388.1    NEVH01012084    PNF30905.1    ABLF02036077    ABLF02036081    NEVH01003017    PNF40781.1    NEVH01023962    PNF17612.1    NEVH01018383    PNF23463.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01020071    PNF21969.1    ABLF02019349    ABLF02041900    NEVH01005938    PNF38077.1    NEVH01010546    PNF32261.1    NEVH01000598    PNF43535.1    NEVH01001355    PNF42855.1    GGMR01003407    MBY16026.1    NEVH01000280    PNF43672.1    NEVH01023961    PNF17613.1    NEVH01019964    PNF22161.1    NEVH01006754    PNF36554.1    NEVH01014858    PNF27387.1    NEVH01007838    PNF34986.1    NEVH01002716    PNF41415.1    NEVH01011985    PNF31054.1    NEVH01017470    PNF24199.1    NEVH01019376    PNF22596.1    GGMR01016114    MBY28733.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01026154    PNF14491.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01017559    PNF23833.1    GGMS01000737    MBY69940.1    JRES01000644    KNC29657.1    NEVH01016327    PNF25684.1    NEVH01021205    PNF19912.1    GEZM01038405    JAV81653.1    GBBI01004395    JAC14317.1    ABLF02041993    LBMM01014395    KMQ85192.1    ABLF02033757    NEVH01019080    PNF22876.1    NEVH01006721    PNF37225.1    GGMS01008766    MBY77969.1    GGMR01000676    MBY13295.1    ABLF02066620    DNOY01000259    HBE18313.1    NEVH01026386    PNF14434.1    GEZM01053022    JAV74219.1    GFXV01000774    MBW12579.1    GGMS01012005    MBY81208.1    NEVH01020963    PNF20308.1    GGMR01018716    MBY31335.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    NWSH01000032    PCG80497.1    GGMR01004661    MBY17280.1    GBGD01000415    JAC88474.1    GBBI01001646    JAC17066.1    GGMS01002992    MBY72195.1    GFXV01006424    MBW18229.1    GGFJ01001858    MBW50999.1    ABLF02008463    GBGD01000880    JAC88009.1    GBGD01000799    JAC88090.1    NEVH01007393    PNF35987.1    GBBI01001693    JAC17019.1    GGMS01017914    MBY87117.1    NEVH01012089    PNF30491.1    GGFJ01001857    MBW50998.1    NEVH01007578    PNF35646.1    LBMM01013518    KMQ85605.1    ABLF02055645    KK113137    KFM59425.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000037069    + More
UP000036403    UP000218220   

PRIDE

Q9XXW0    Q9BPQ0    Q93137    K9N5J5   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q9BPQ0   Q93137   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
A0A194Q1H8   O96546   O96544   V5GNF3   A0A139WA11   A0A1Y1NA23   A0A139W8G9   V5GNJ2   V5I850   X1WMU5   J9KKL3   A0A2S2PR14   X1WWC4   A0A2S2Q823   X1WXU3   A0A087T1W0   X1WLB2   A0A087U2S8   A0A224XF24   A0A2J7QQP1   J9KV82   A0A2J7RIW7   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q059   X1WL89   A0A2J7RB54   A0A2J7QUJ9   A0A2J7RRU8   A0A2J7RPU2   A0A2S2NGV8   A0A2J7RS77   A0A2J7PMP9   A0A2J7Q0Q6   A0A2J7R6U1   A0A2J7QFL0   A0A2J7R2E1   A0A2J7RKP3   A0A2J7QR37   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2S2PH29   A0A2J7QEZ4   A0A2J7PDS9   A0A2J7QY69   A0A2J7PBY3   A0A2J7Q5G9   A0A2S2PX53   A0A0L0CBP5   A0A2J7QAT1   A0A2J7PU96   A0A1Y1M7E9   A0A023EYS8   X1X5Q5   A0A0J7K4E0   J9KC83   A0A2J7Q2R1   A0A2J7R8R8   A0A2S2QJM7   A0A2S2N814   X1X928   A0A352X8G4   A0A2J7PDM0   A0A1Y1LKN6   A0A2H8TES1   A0A2S2QTZ8   A0A2J7PVE7   A0A2S2PPK8   A0A0A9Z4E6   A0A0A9YN51   A0A2A4K8E7   A0A2S2NJB5   A0A069DZL8   A0A023F6S4   A0A2S2Q383   A0A2H8TWD9   A0A2M4BD67   J9KCZ4   A0A069DZC5   A0A069DW01   A0A2J7R579   A0A023F742   A0A2S2RAN7   A0A2J7QPI2   A0A2M4BDV6   A0A2J7R4B1   A0A0J7MYU2   X1XGU0   A0A087T2T6  

PDB

6AR3     E-value=0.00383202,     Score=96

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

483

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02817

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00079

outside

1  -  483

 

 

Pi

17.96591

Theta

24.454371

Tajima's D

-1.102498

CLR

20.004444

CSRT

0.11704414779261

Interpretation

Uncertain