SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04520  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005455
Annotation
coiled-coil-helix-coiled-coil-helix_domain-containing_protein_2?_mitochondrial-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.253
 

Sequence

CDS
ATGCCTCGACGAGGAAGATCAGCAAGCCCTCCACCAGCGCCTCAAAGGAGAGCTGCTCCCCCGCCAAGTAATGTACCAGCTCGTGCGGCTCCATCGACCCCGGCTACGACAGTAGCTCAACCTCAGCAGCCCTCGCTATTCGGGCAGATGGCTGCCACGGCTGGTGGCGTAGCTGTAGGATCGGCTGTGGGTCATGTGGCTGGTAGTGCTCTAACAGGTATGTTTAGTGGTGGTGGAAGCAGCGAGCCAGCCCAGCAACAGCAAGCAGCTCCTGCAGCTCAAACCTACAATCAATACCAGGGACAGCCGGCTCAAGGACCATGCGCGTGGGAGATCAAGCAATTCTTGGAATGTGCTCAACAACAGCACGACTTGTCACTCTGTGATGGCTTCAATGAAGCTCTACGTCAATGCAAAGTCAATAACCACATCTAA
Protein
MPRRGRSASPPPAPQRRAAPPPSNVPARAAPSTPATTVAQPQQPSLFGQMAATAGGVAVGSAVGHVAGSALTGMFSGGGSSEPAQQQQAAPAAQTYNQYQGQPAQGPCAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNNHI

Summary

Pfam
PF06747   CHCH
Interpro
IPR010625   CHCH       

Ontologies

GO

Topology

Length:
144
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.10559
Exp number, first 60 AAs:
1.67346
Total prob of N-in:
0.29179
outside
1  -  144
 
 

Population Genetic Test Statistics

Pi
224.894088
Theta
206.36521
Tajima's D
0.282653
CLR
0
CSRT
0.443577821108945
Interpretation
Uncertain
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