SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04518
Pre Gene Modal
BGIBMGA005353
Annotation
putative_exonuclease_GOR-like_protein_[Operophtera_brumata]
Location
Bomo_Chr8(-):8589316-8628527      View in EpiBrowser
Location in the cell
Cytoplasmic   Reliability : 1.081 Nuclear   Reliability : 1.533
 

Sequence

CDS
ATGCATTTTTGTATTCAATTCCACGATTGGTTTTATCAAGAGACCGTCGCGTCGGTGGACCCTGCCGGCGCTGCAGCACGCCGGCGCAAGCCGCGTGATCAACGCCGCCCCCCGTCCGCGCCGACGACGCCGTCGACGCCGCAGAGACTCTCCACTGAACAACTAGCACAGGCCCTCCGGTCACATTTCCTGTCTCCAAAGCGCATGTGGACCTTGGGATATCCTTTGGAAATTGAACCGAATTCGACTAAAGCGGTCGTATACATAAATCCACCGCCTCGACCTAGACCGATGACTACGTGGGATGTAAATGCCCCTGAATTTGTTCCCGGGTCCCAAGGTGACAGCGGTCGCGGGTCCTTGGGGTCAACTCCGCGATCTGACAGTGACGAAGAAGCGGATGCTGTGGAACACTTGTGTGTACGTTGTGATAAAATGTTTAGAATGACTCGTGATGGTGAATACGTTAAAGAAGAAACATGCCTCTATCATTGGGGCCGTGTTAGTAGTGATTCTCGGTACGCATGCTGCAAATCAATGCTCGGCTCAAGAGGATGCAGTGTAGCGCGATCTCATGTGTGGAGCGGTACTCGTCCTGGGATGAACGGACCTCTTGAAGGCTACGTGCGCGCACGTTCACCTCGCGGTGGAGTGTATGCTATTGACACGGAGATGTGTTATACTACAGCAGGATTGGAATTAGCTAGTATCGCGGTCATTGCAGCCGATGGCCGTCTTGTATACCGATCACTAGTTAAACCGAGTTCACCTGTCGTCGATCACAACACCCGTTTCTCGGGCATCAGGCCGCGCGACTTGGCGCGCGCGACTAAGACGCTACGAGACGTACAAAACGATATACTAGGATTCGTTGGAACTGACACAATCCTTATCGGACATGCTCTGGAAAATGATCTCCGCGCTTTGAAGTTATTGCACAGCGCAGTTGTAGATACATGTGCTTTATATCCACACGCACGAGGATTCCCAATGCGCCGATCACTACGCGCCCTATCCGAGGAGCTTCTGGGCCGTACTGTACAAAGAGGCAGCAATGGTCACTCGCCATTGGAAGATGCTCGAGCTGCTATGGATTTGGTGCTACTTAAAGTACAGCAGGAGCAAGCGAACAGAGTACACAGCATATCATATCAACTACCTATTTTGCAACCTTATGATCCATTAGTTGATTTTTTCTTAGATGGGTCAGTGATCCTTTGGGACATACGAGATCTGAGCCAGAAGGAGCACAGAACTTTACGTGTGAACATCGAGTTTGACCACGCCTCCCATGTGGCCTGGAGCCCGGACTCCAAGGCTTTCATCGTTCACACCGTACGAGAAAATAATATTATCGTCTACAAAATCGAGAAGAAGAAGGATGGCGCTATTGCTTCCGCCACGCCTGCTATCACTTTCGATAAGGTCCACCAAGATGACGTAATAGGATTCGATATATCGAGTAACGGGAAATTCATGATGTCGTGCTCATCAAAGACAGATTTGGTGATATGGGACCTAAAAGGGCAACAGCTTGAGAAGCTAGACACGTATCTGATGAGCACTCACGCCGCCAAGATATCGCCCTGTGGCCGTTTCGTCGTCGCCACCGGTTTCTCGCCAGACGTTAAAGTAATGGAAGTGTGTTTTACGAAAACTGGAGATTTCAAACAGGTGTCAAAGGCTTACGAGCTGACGGGACATTCGTCGGGTATATACGACGTGGCTTTCGATGTTGACACGTCACACATCGCAACAATATCCAAAGACGGCACGTGGAAGCTATACCACACAAAGATCGATTACGTCAGAGGTGAATCTCCCCACGTTTTGGAGACGGGGAAATACACGCAGACCGCAAATGCACCTCGCATCGCGCTATCGCCCAACGCCGAAGTCCTGGCCGTGTCTGTTGATTCTTCAATAGAGTTCTACGACACGTATACAGGGATATTATATGACACCGTGGAAAATGTTTACACAGGTCTAGTTAACTACATGAAGTTTGACGCAAGCGGCCAGTATTTGTTCGTATGCGGCGACCGAGTCGTGAGGGTGCTCCACAACGTTTGCGGATACTTCACGACCATTGAGAGTTGCAAAAGACTTCTCAAAAGTAAACAGACCTCCGCGACTGTGGAACGTCTTCATAAAACAATACAAGATTGCAAGCAGACCTTAAAGAAATTCGGTAAGTAA
Protein
MHFCIQFHDWFYQETVASVDPAGAAARRRKPRDQRRPPSAPTTPSTPQRLSTEQLAQALRSHFLSPKRMWTLGYPLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVSSDSRYACCKSMLGSRGCSVARSHVWSGTRPGMNGPLEGYVRARSPRGGVYAIDTEMCYTTAGLELASIAVIAADGRLVYRSLVKPSSPVVDHNTRFSGIRPRDLARATKTLRDVQNDILGFVGTDTILIGHALENDLRALKLLHSAVVDTCALYPHARGFPMRRSLRALSEELLGRTVQRGSNGHSPLEDARAAMDLVLLKVQQEQANRVHSISYQLPILQPYDPLVDFFLDGSVILWDIRDLSQKEHRTLRVNIEFDHASHVAWSPDSKAFIVHTVRENNIIVYKIEKKKDGAIASATPAITFDKVHQDDVIGFDISSNGKFMMSCSSKTDLVIWDLKGQQLEKLDTYLMSTHAAKISPCGRFVVATGFSPDVKVMEVCFTKTGDFKQVSKAYELTGHSSGIYDVAFDVDTSHIATISKDGTWKLYHTKIDYVRGESPHVLETGKYTQTANAPRIALSPNAEVLAVSVDSSIEFYDTYTGILYDTVENVYTGLVNYMKFDASGQYLFVCGDRVVRVLHNVCGYFTTIESCKRLLKSKQTSATVERLHKTIQDCKQTLKKFGK

Summary

Uniprot
A0A182GK34   T1J8S9  
Pubmed
26483478   
EMBL
JXUM01013075    JXUM01013076    JXUM01013077    JXUM01013078    JXUM01013079    KQ560368    + More
KXJ82768.1    JH431963   
Proteomes
UP000069940    UP000249989   
Pfam
PF00400   WD40        + More
PF00929   RNase_T
Interpro
IPR036397   RNaseH_sf        + More
IPR036322   WD40_repeat_dom_sf       
IPR013520   Exonuclease_RNaseT/DNA_pol3       
IPR034922   REX1-like_exo       
IPR012337   RNaseH-like_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR019775   WD40_repeat_CS       
SUPFAM
SSF53098   SSF53098        + More
SSF50978   SSF50978       
Gene 3D
2.130.10.10     3.30.420.10    
CDD
cd06145  REX1_like
ProteinModelPortal
A0A182GK34   T1J8S9  
PDB
5Z9X     E-value=1.73248e-15,     Score=204

Ontologies

KEGG
101737318    K23325 transducin beta-like protein 2 | (RefSeq) transducin beta-like protein 2
GO
GO:0003676   GO:0016021   GO:0005515   GO:0005622   GO:0016887   GO:0030870   GO:0006310   GO:0006418   GO:0009058   GO:0016742   GO:0003824  

Topology

Length:
732
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01338
Exp number, first 60 AAs:
0.0002
Total prob of N-in:
0.00053
outside
1  -  732
 
 

Population Genetic Test Statistics

Pi
210.850723
Theta
168.73506
Tajima's D
0.294466
CLR
0.716959
CSRT
0.453427328633568
Interpretation
Uncertain
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