Silkworm Genome Informatics Database

Gene

KWMTBOMO04514

Pre Gene Modal

BGIBMGA005357

Annotation

RNA-binding_motif?_single-stranded-interacting_protein_1?_partial_[Operophtera_brumata]

Location

Bomo_Chr8(-):8359245-8374967 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.975

CDS

ATGGGCGGTGGGTGCGGCGGTACCGGTACGCGTGTGCCAACCGCAGCGTCTCCGGCTAATACGGCCTCCTCATCGTCATCCAACACCGGCTCTGGGGGCGGAACTCGCTCGACTAGCCTCAGCACTGCGCCGCCTCCACCGGCATCTTCCGCGTCCACATCGGCCGCCGGCGTTGAGCAACTGAGCCGCACCAATCTTTACATTCGAGGACTGAGTCCGAACACTACCGATAAGGACCTCGTCCAAATGTGCCAAATGTATGGCAGCATAATTTCAACTAAAGCGATTTTGGACAAAAATACGAATAAATGTAAAGGTTATGGTTTTGTAGATTTCGAAACGATCGCATCAGCCGAGGCAGCTGTTAAAGGATTACAAGCCAAAGGTGTTCAGGCCCAGATGGCTAAACAACAAGAGCAGGATCCGACCAACTTGTACATGGCGAATCTGCCGCCGCACTTCAAAGAGAACGACGTGGATCAGCTCTTAGCTAAGTTCGGTCAGGTGGTATCGACAAGGATACTTAGAGACACCCACGGCCAAAGCAAAGGAGTTGGTTTTGCGCGTATGGAATCTAGGGAGAAATGCGAGCAAATTATTCAAATGTTTAACGGGAACCCAATACCTGGTGCTAAAGAGCCTCTGCTAGTGAAATTCGCCGACGGCGGAAATAAGAAGAAGTCTTCGTACAAGCAAAACGAAAGTAACGGAAGAACATGGAGGGATAACAGCGAGACCATTACACAGGCTGCAATGGCAGTTAGCGGAGTGTACGCGGGCACCATGAGTGCCGGCGGCGCTGGCGGGGAGTGCGCCGGTGTGTACCGCAGCAGCGGCGTGTACGGGGTGGCCGCGTTCCATCACCCCCAACTGCACCACCACCACCACGCCGCGCACCCCGCCGCCTGGCTCGCGCCCTACGCCGCGCTGCTGCCGCCCGCGCACCAGCCCCACCCGCCGCACATACCCATCGACACCGTGCCCAGCCAATATGTTAACTGGGAAAGCTTAAGGCAGGAAAATGAACTATACTACTTCGCGTCGCACCCGTACCAGTACTTCACCGGGCCGACGCCGCCCATAATCCAAATGCCGATGGAGAGCGAGCACGCGTCGACGGCGGCGTCGCCCGACGAGGCATACCAGCCGTACCCTCCCCCGAAGTAG

Protein

MGGGCGGTGTRVPTAASPANTASSSSSNTGSGGGTRSTSLSTAPPPPASSASTSAAGVEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGLQAKGVQAQMAKQQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIPGAKEPLLVKFADGGNKKKSSYKQNESNGRTWRDNSETITQAAMAVSGVYAGTMSAGGAGGECAGVYRSSGVYGVAAFHHPQLHHHHHAAHPAAWLAPYAALLPPAHQPHPPHIPIDTVPSQYVNWESLRQENELYYFASHPYQYFTGPTPPIIQMPMESEHASTAASPDEAYQPYPPPK

Uniprot

A0A212EU20 A0A0L7LMW5 A0A3S2LRM3 A0A2H1VX77 H9J765 A0A2J7PPX9 + More
A0A1B6MCU4 A0A1B6KQZ4 A0A1B6K8X2 A0A1B6MKY1 A0A1B6LB27 A0A1B6M2L0

Pubmed

22118469 26227816 19121390

EMBL

AGBW02012491 OWR44990.1 JTDY01000532 KOB76770.1 RSAL01000289 RVE42921.1 + More
ODYU01005000 SOQ45439.1 BABH01013775 BABH01013776 NEVH01022643 PNF18381.1 GEBQ01006237 JAT33740.1 GEBQ01026105 JAT13872.1 GEBQ01032068 JAT07909.1 GEBQ01009650 GEBQ01003425 JAT30327.1 JAT36552.1 GEBQ01025846 GEBQ01019112 JAT14131.1 JAT20865.1 GEBQ01010301 GEBQ01009820 JAT29676.1 JAT30157.1

Proteomes

UP000007151 UP000037510 UP000283053 UP000005204 UP000235965

PRIDE

H9J765

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR002343   Hud_Sxl_RNA

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

A0A212EU20 A0A0L7LMW5 A0A3S2LRM3 A0A2H1VX77 H9J765 A0A2J7PPX9 + More
A0A1B6MCU4 A0A1B6KQZ4 A0A1B6K8X2 A0A1B6MKY1 A0A1B6LB27 A0A1B6M2L0

PDB

1X5O E-value=1.38841e-26, Score=297

KEGG

101745493 no KO assigned | (RefSeq) protein alan shepard

GO

GO:0003723 GO:0003676 GO:0000166 GO:0016887 GO:0030870 GO:0006310 GO:0006418 GO:0009058 GO:0016742 GO:0003824

Length:

388

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02329

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00335

outside

1 - 388

Pi

174.940314

Theta

171.00921

Tajima's D

-0.63035

CLR

0.790587

CSRT

0.214489275536223

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics