Gene

KWMTBOMO04506

Pre Gene Modal

BGIBMGA005360

Annotation

PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_8_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr8(-):8301670-8305087      View in EpiBrowser

Full name

Conserved oligomeric Golgi complex subunit 8      

Alternative Name

Component of oligomeric Golgi complex 8

Location in the cell

Nuclear   Reliability : 3.746

CDS

ATGTCTCAGGAACTAAAGGAACTCTGTCAATTAATTTTCCCAAGCTCACCTACAGAAAATGTCATATTTTTTAGCGAAGTCAGTGATTACATCAAAAAATTGGGTTCTCAGAATTGGGACTATATTCGGAAAGAACCAGAAAGGCTTACTGAGGAGATGAAGCACTTAACAGAGCAGACCCAGGAATTAGCATTCACAAATTACAAGACTTTTGTTGAAACTGCAGAAATATCCCGTACTATAATTAAGGATCTTAATAGATCAAAGCAATCCTTACAGAATTTTCTTGATGCTACTCCTGGTTTTATTGAAGAGAGCGAAAGGTTTTCGCAGATGGCTGGTACCATTGTGAAAGAGAAAAGTCGATATAGCACTATCAGAAATCAAAGTGATAAGTTGTTAGAACTTCTTGAACTGCCGTCGTTGATGCGAGAGGCTTTAAATGCTGAAGATTATGAAAGTGCATTAGATATATTCACTTTTGTTCGAAATTTAAGTAAAAGGTACTCTGTGATACCAATTGTTCAGAATACAACAAATGAGATAATGACATTATGGTTTGAAACACTGTATCATCTCTTCAATCAGCTTCGTTATGATTTACCGCTTCCTCAGTGCCTACAAATATTAGGTTACCTGCGCAGAGCAAACACAGTTTACAAATCAACAGATGAAGAAGAAAACAGTATGCAGTCTATAATAGGGAACAAAAATACAAGTTCTGATGGATTACACTTACATTTCTTAAAAGCGAGAAATGCTTGGTTTGAAAAAGCTTTAGTTGATGCTAGAAATTCTGAATCATCTGATAAAGTTCTAAGAAGAATTGTGGAATTGCATAGAATACATCTCTTCAATGTATTAACCCAGCATAAATCAATTTTCTTATCTGATGCTCAAGAATCCAAAGCAAGAGATGATGAATTGAGTGGAAACAGTGCTCTATCAAACTGGTTAAAATTAAAGGTGGAGATTTTCGCGCATATTTTAAACCAAAATTTGGGTAAAGAAGATGAAGCTAATTTCGAATCACTTTTGAACCAATGTATGTACCTTTGTCTTTCGTTCGGAAGAGTCGGCGCTGACATGCGGTGTGTCTTAACGCCGCTGTTTCGCGACTGCATACTAAAGCAATTCCATTCAAGTCTTGATAAAGTCAGTGATCACTTTGAGCAACAAATGCGTGCATACAAAGTTCCTAGTATCAAAAACTATCCAAGACCAATTACGGAAACGGCAAAGGGTCCTCCCGAAAACCTCCTTGATTACTATCCACTAGCAGAGTACTGCAATGGAATGCTTACAGTCTTGAATTCTTTAAGAGTTACAGCTCCATTAAACATAGCTAAAGAAGTGTATAACTCATATAAAGAATCATTAAACAGTACAGTCCAAGTATTGTTAAATTTCTATTACAGAGAACAACAAGGATTTACTGATGTGGAGAGACAAAATTACGTATCATTGTGTCTTTCCTTTAGAGATGATTTAATACCTTACATCACTAAATGTTTATCTCAATCGTTCCCTTCAACACAAATAGCAGAGTTGCTAGGTGTTACTTTGACTGTTCTTCAAGACAGTAAAATTTTGTACATAGACCTCCATGCAATGTGTGAACCTTTAAATGTCATTACTGGTTCAAATTAA

Protein

MSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGFIEESERFSQMAGTIVKEKSRYSTIRNQSDKLLELLELPSLMREALNAEDYESALDIFTFVRNLSKRYSVIPIVQNTTNEIMTLWFETLYHLFNQLRYDLPLPQCLQILGYLRRANTVYKSTDEEENSMQSIIGNKNTSSDGLHLHFLKARNAWFEKALVDARNSESSDKVLRRIVELHRIHLFNVLTQHKSIFLSDAQESKARDDELSGNSALSNWLKLKVEIFAHILNQNLGKEDEANFESLLNQCMYLCLSFGRVGADMRCVLTPLFRDCILKQFHSSLDKVSDHFEQQMRAYKVPSIKNYPRPITETAKGPPENLLDYYPLAEYCNGMLTVLNSLRVTAPLNIAKEVYNSYKESLNSTVQVLLNFYYREQQGFTDVERQNYVSLCLSFRDDLIPYITKCLSQSFPSTQIAELLGVTLTVLQDSKILYIDLHAMCEPLNVITGSN

Description

Required for normal Golgi function.

Subunit

Component of the conserved oligomeric Golgi complex which is composed of eight different subunits and is required for normal Golgi morphology and localization.

Similarity

Belongs to the COG8 family.

Keywords

Complete proteome   Golgi apparatus   Membrane   Protein transport   Reference proteome   Transport   Congenital disorder of glycosylation   Polymorphism  

Feature

chain  Conserved oligomeric Golgi complex subunit 8
sequence variant  In dbSNP:rs3027.

Uniprot

H9J768   A0A2A4J7K6   A0A2H1X0R0   A0A1E1WUV8   A0A3S2NML7   S4PWY0   + More
A0A212EI89   A0A194PMC5   A0A194RD62   A0A2J7R8N2   A0A067RM63   A0A2P8ZLY9   A0A1B6M794   A0A034V2J5   A0A0A1WG88   A0A1I8P4J1   A0A0K8U1H9   A0A0L0CGJ9   A0A1L8DVG2   B4LQF0   A0A1A9VXL8   A0A1I8ME71   A0A1B6DKQ7   A0A1A9XDS3   A0A1B0B0E4   A0A1B0G4H8   B3N4I1   A0A1A9ZIU5   A0A023EX81   B4G6P5   Q29M23   B4NMV6   A0A182GTS9   A0A1S4FK99   Q16XW7   B4Q370   B4HX53   B4P1G9   Q9VKH0   A0A1A9W1R1   K7J0M6   A0A1W4W055   A0A232FK12   E2A4G1   W8BKN4   B4JPH8   B3MMU4   A0A0M4EFP9   A0A3B0JAZ3   B0WGX3   B4KH87   N6UFE8   A0A1Q3F7X4   A0A084WBA5   A0A195D9R9   F4WXK7   E2BLS9   A0A026W2Z3   D2A1E2   A0A0J9R0C9   A0A154P8Y3   A0A195BXF7   U4UM63   A0A182R8M4   A0A182QH74   A0A1Q3F766   A0A2M4ACF7   Q7Q351   A0A182UE16   A0A2M4AC06   A0A182LPE9   A0A182IWC6   A0A182XC74   A0A182IIF8   A0A182USF3   A0A182K7Q1   A0A195CQJ0   A0A2M4CQL7   W5JT40   A0A182MMK2   A0A182SKE4   A0A182MY14   A0A2M3Z5K9   A0A2M3Z6C7   A0A0T6B415   A0A1Y1KQR1   A0A3F2YWK0   A0A310SS82   A0A182FKQ1   A0A1U7QZJ1   A0A2M4BHX4   A0A2M4BHE3   A0A024R6Z6   Q96MW5   A0A0N0BI72   U4UBE7   K7C7D5   A0A2R8Z9X5   K7CR24  

Pubmed

19121390    23622113    22118469    26354079    24845553    29403074    + More
25348373    25830018    26108605    17994087    25315136    24945155    15632085    26483478    17510324    17550304    10731132    12537572    12537569    20075255    28648823    20798317    24495485    23537049    24438588    21719571    24508170    30249741    18362917    19820115    22936249    12364791    14747013    17210077    20966253    20920257    23761445    28004739    28071753    11181995    14702039    15489334    11703943    17331980    21269460    22722832    16136131   

EMBL

BABH01013772    NWSH01002530    PCG68065.1    ODYU01012497    SOQ58838.1    GDQN01000286    + More
JAT90768.1    RSAL01000032    RVE51520.1    GAIX01006003    JAA86557.1    AGBW02014681    OWR41198.1    KQ459599    KPI94472.1    KQ460397    KPJ15215.1    NEVH01006721    PNF37192.1    KK852543    KDR21660.1    PYGN01000019    PSN57517.1    GEBQ01008206    JAT31771.1    GAKP01022256    GAKP01022253    JAC36699.1    GBXI01016248    JAC98043.1    GDHF01031941    JAI20373.1    JRES01000433    KNC31337.1    GFDF01003668    JAV10416.1    CH940649    EDW63400.1    GEDC01011041    JAS26257.1    JXJN01006750    CCAG010000911    CH954177    EDV58893.1    GAPW01000604    JAC12994.1    CH479180    EDW29159.1    CH379060    EAL33872.3    CH964282    EDW85695.2    JXUM01087786    KQ563658    KXJ73537.1    CH477530    EAT39477.1    CM000361    EDX04701.1    CH480818    EDW52598.1    CM000157    EDW88076.1    AE014134    BT031276    AY069825    NNAY01000105    OXU30923.1    GL436635    EFN71708.1    GAMC01009022    JAB97533.1    CH916372    EDV98808.1    CH902620    EDV30969.1    CP012523    ALC39317.1    OUUW01000004    SPP79517.1    DS231930    EDS27267.1    CH933807    EDW13304.1    APGK01029087    KB740724    ENN79356.1    GFDL01011457    JAV23588.1    ATLV01022328    KE525331    KFB47499.1    KQ981082    KYN09612.1    GL888425    EGI61077.1    GL449036    EFN83413.1    KK107519    QOIP01000009    EZA49404.1    RLU18524.1    KQ971338    EFA02659.1    CM002910    KMY89757.1    KQ434829    KZC07678.1    KQ976401    KYM92633.1    KB632278    ERL91256.1    AXCN02001643    GFDL01011634    JAV23411.1    GGFK01005153    MBW38474.1    AAAB01008966    EAA13024.4    GGFK01004969    MBW38290.1    APCN01001931    KQ977444    KYN02742.1    GGFL01003448    MBW67626.1    ADMH02000526    ETN66110.1    AXCM01007124    GGFM01003051    MBW23802.1    GGFM01003321    MBW24072.1    LJIG01016010    KRT81886.1    GEZM01078375    JAV62751.1    KQ760645    OAD59682.1    GGFJ01003267    MBW52408.1    GGFJ01003272    MBW52413.1    CH471092    EAW83267.1    AK056344    AK025968    BC017492    BC121022    BC121023    KQ435733    KOX77238.1    ERL91254.1    GABE01006263    JAA38476.1    AJFE02047230    AJFE02047231    AJFE02047232    AACZ04051800    GABC01006188    GABD01006415    JAA05150.1    JAA26685.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053268    UP000053240    + More
UP000235965    UP000027135    UP000245037    UP000095300    UP000037069    UP000008792    UP000078200    UP000095301    UP000092443    UP000092460    UP000092444    UP000008711    UP000092445    UP000008744    UP000001819    UP000007798    UP000069940    UP000249989    UP000008820    UP000000304    UP000001292    UP000002282    UP000000803    UP000091820    UP000002358    UP000192221    UP000215335    UP000000311    UP000001070    UP000007801    UP000092553    UP000268350    UP000002320    UP000009192    UP000019118    UP000030765    UP000078492    UP000007755    UP000008237    UP000053097    UP000279307    UP000007266    UP000076502    UP000078540    UP000030742    UP000075900    UP000075886    UP000007062    UP000075902    UP000075882    UP000075880    UP000076407    UP000075840    UP000075903    UP000075881    UP000078542    UP000000673    UP000075883    UP000075901    UP000075884    UP000075885    UP000069272    UP000189706    UP000005640    UP000053105    UP000240080    UP000002277   

PRIDE

H9J768    Q9VKH0    A0A024R6Z6    Q96MW5   

Pfam

PF04124   Dor1        + More
PF00458   WHEP-TRS
PF03129   HGTP_anticodon
PF13393   tRNA-synt_His

Interpro

IPR016159   Cullin_repeat-like_dom_sf        + More
IPR007255   COG8       
IPR016632   COG8_Metazoal_Plant       
IPR004154   Anticodon-bd       
IPR006195   aa-tRNA-synth_II       
IPR015807   His-tRNA-ligase       
IPR000738   WHEP-TRS_dom       
IPR009068   S15_NS1_RNA-bd       
IPR041715   HisRS-like_core       
IPR036621   Anticodon-bd_dom_sf       
IPR033656   HisRS_anticodon       

SUPFAM

SSF74788   SSF74788        + More
SSF47060   SSF47060       

Gene 3D

3.40.50.800    

CDD

cd00773  HisRS-like_core
cd00859  HisRS_anticodon

ProteinModelPortal

H9J768   A0A2A4J7K6   A0A2H1X0R0   A0A1E1WUV8   A0A3S2NML7   S4PWY0   + More
A0A212EI89   A0A194PMC5   A0A194RD62   A0A2J7R8N2   A0A067RM63   A0A2P8ZLY9   A0A1B6M794   A0A034V2J5   A0A0A1WG88   A0A1I8P4J1   A0A0K8U1H9   A0A0L0CGJ9   A0A1L8DVG2   B4LQF0   A0A1A9VXL8   A0A1I8ME71   A0A1B6DKQ7   A0A1A9XDS3   A0A1B0B0E4   A0A1B0G4H8   B3N4I1   A0A1A9ZIU5   A0A023EX81   B4G6P5   Q29M23   B4NMV6   A0A182GTS9   A0A1S4FK99   Q16XW7   B4Q370   B4HX53   B4P1G9   Q9VKH0   A0A1A9W1R1   K7J0M6   A0A1W4W055   A0A232FK12   E2A4G1   W8BKN4   B4JPH8   B3MMU4   A0A0M4EFP9   A0A3B0JAZ3   B0WGX3   B4KH87   N6UFE8   A0A1Q3F7X4   A0A084WBA5   A0A195D9R9   F4WXK7   E2BLS9   A0A026W2Z3   D2A1E2   A0A0J9R0C9   A0A154P8Y3   A0A195BXF7   U4UM63   A0A182R8M4   A0A182QH74   A0A1Q3F766   A0A2M4ACF7   Q7Q351   A0A182UE16   A0A2M4AC06   A0A182LPE9   A0A182IWC6   A0A182XC74   A0A182IIF8   A0A182USF3   A0A182K7Q1   A0A195CQJ0   A0A2M4CQL7   W5JT40   A0A182MMK2   A0A182SKE4   A0A182MY14   A0A2M3Z5K9   A0A2M3Z6C7   A0A0T6B415   A0A1Y1KQR1   A0A3F2YWK0   A0A310SS82   A0A182FKQ1   A0A1U7QZJ1   A0A2M4BHX4   A0A2M4BHE3   A0A024R6Z6   Q96MW5   A0A0N0BI72   U4UBE7   K7C7D5   A0A2R8Z9X5   K7CR24  

KEGG

101736204    K20295 conserved oligomeric Golgi complex subunit 8 | (RefSeq) conserved oligomeric Golgi complex su

GO

GO:0017119   GO:0015031   GO:0006891   GO:0000139   GO:0005794   GO:0032588   GO:0006888   GO:0016020   GO:0005524   GO:0004821   GO:0006427   GO:0005634   GO:0006281   GO:0016887   GO:0030870   GO:0006310   GO:0006418   GO:0009058   GO:0016742   GO:0003824  

PANTHER

PTHR21311  

Subcellular location

Golgi apparatus membrane  

Length:

549

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00941999999999997

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.00136

outside

1  -  549

 

 

Pi

143.768034

Theta

148.685411

Tajima's D

-0.966924

CLR

166.330154

CSRT

0.147342632868357

Interpretation

Uncertain