Gene

KWMTBOMO04503

Pre Gene Modal

BGIBMGA005362

Annotation

PREDICTED:_transmembrane_protein_47_[Amyelois_transitella]

Location

Bomo_Chr8(-):8266413-8282567      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.897

CDS

ATGATCGAGACTGTTACCATAACAAGGCCATTAAAGGTAATCGCGCTAATATGTGGCTTGCTGGTTGTAATCCTGATGGTGCTTGGACTGGCATCAGCGGACTGGCTAATGGCGGCCGGCTGGCGTCAGGGGCTTTTTATGCACTGCATCGACCCAATCGCACCAACACCCTTGCCCTTCGACATTATAGCTCAGCCGGGATGCTACGCCGCGAGACCAGCCCCATACATCAAGGCCGCGGCTGGTTTGTGCGTGGCGACGCTAGCGGCGGATGTGTGCGGGGCTCTGTTGACCGGGCTCGGACTGCGCTCCACTGATCACCGCACTAAGTTTCGGTACTACCGTTTCGCAGTGCTCGCTATGGCCCTTGCACTGATGTGCATTTTGATAGCATTAGTCATCTACCCGGTTTGCTTTGCGGCCGAATTAAATCTGGGTAAGCGAATTATGTTTTTCTTTTTAATTTCTATCAATTGTTATATTCTAAAGATATGGTATGGTATTTTTAATAAAGGTATGGTATTTTCTTTTCGTATTTTTATATAA

Protein

MIETVTITRPLKVIALICGLLVVILMVLGLASADWLMAAGWRQGLFMHCIDPIAPTPLPFDIIAQPGCYAARPAPYIKAAAGLCVATLAADVCGALLTGLGLRSTDHRTKFRYYRFAVLAMALALMCILIALVIYPVCFAAELNLGKRIMFFFLISINCYILKIWYGIFNKGMVFSFRIFI

Uniprot

A0A194RC82   A0A0A9YAK7   A0A2H8TMB3   J9JQQ8   A0A158NB47   A0A0C9RY15   + More
E0VCG3   A0A139WBQ2   E9J006   A0A026W1Y3   A0A1L8D8N2   A0A1Y1KNE9   A0A1B6GWQ5   A0A1L8D8X7   A0A1B6IVK7   A0A2S2QWQ8   K7IVH9   A0A0P4WJB9   A0A1B6MJZ0   A0A0A1WQN3   A0A0K8UB50   A0A034VKH6   W8BS79   A0A336MHU7   A0A1B6M2K5   A0A0Q9WYR2   A0A224XT87   A0A069DX37   A0A034VIU2   A0A1Q3FBY0   B0XA51   W8BLR1   B4LXC2   B4N9Q4   A0A0M4EPG3   A0A0P8XZR6   A0A1B6CXG9   A0A1I8MWC8   A0A1I8Q7M0   A0A0R1E9D0   U5EY49   B4JIE9   B4KAC0   B4IQP5   A0A1Q3FVL6   A0A1W4V8P2   A0A0Q9WTM5   A0A1B6DFK5   B4HET1   A0A3B0KH50   B3LZR1   B4PME8   Q17L63   A0A1A9XG99   A0A1A9ZHM5   D3TS26   B4R0Q4   Q9VCV1   A0A1I8Q7J7   A0A182H7W2   A0A1I8MWC9   A0A023ELH6   A0A0R3NJQ0   A0A1W4VKE7   B3P8K3  

Pubmed

26354079    25401762    21347285    20566863    18362917    19820115    + More
21282665    24508170    28004739    20075255    25830018    25348373    24495485    17994087    26334808    18057021    25315136    17550304    17510324    20353571    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26483478    24945155    15632085   

EMBL

KQ460397    KPJ15212.1    GBHO01013512    JAG30092.1    GFXV01002997    MBW14802.1    + More
ABLF02038155    ABLF02038161    ADTU01010876    GBYB01012781    GBYB01012784    JAG82548.1    JAG82551.1    DS235053    EEB11069.1    KQ971372    KYB25333.1    GL767291    EFZ13877.1    KK107485    EZA50080.1    GFDF01011248    JAV02836.1    GEZM01081259    JAV61730.1    GECZ01018454    GECZ01002895    JAS51315.1    JAS66874.1    GFDF01011171    JAV02913.1    GECU01016758    JAS90948.1    GGMS01012931    MBY82134.1    GDRN01068559    JAI64179.1    GEBQ01003756    JAT36221.1    GBXI01015462    GBXI01013331    GBXI01008635    JAC98829.1    JAD00961.1    JAD05657.1    GDHF01028417    GDHF01022591    GDHF01006351    JAI23897.1    JAI29723.1    JAI45963.1    GAKP01016901    GAKP01016899    GAKP01016898    GAKP01016897    JAC42053.1    GAMC01006802    GAMC01006801    JAB99753.1    UFQS01001232    UFQT01001232    SSX09872.1    SSX29595.1    GEBQ01009798    JAT30179.1    CH933806    KRG01104.1    GFTR01003388    JAW13038.1    GBGD01002995    JAC85894.1    GAKP01016900    JAC42052.1    GFDL01009961    JAV25084.1    DS232564    EDS43516.1    GAMC01006803    JAB99752.1    CH940650    EDW67800.1    CH964232    EDW80619.2    KRF99312.1    CP012526    ALC45997.1    CH902617    KPU80047.1    GEDC01019283    JAS18015.1    CM000160    KRK04096.1    KRK04098.1    GANO01000602    JAB59269.1    CH916369    EDV93030.1    EDW14607.2    CH689249    EDW45286.1    GFDL01003529    JAV31516.1    KRF83476.1    KRF83477.1    GEDC01012817    JAS24481.1    CH480815    EDW43242.1    OUUW01000007    SPP82998.1    EDV43055.2    EDW98053.2    CH477218    EAT47432.1    CCAG010010579    EZ424228    ADD20504.1    CM000364    EDX13977.1    AE014297    BT011196    AAF56054.1    AAR88558.1    JXUM01028359    JXUM01028360    JXUM01028361    JXUM01028362    KQ560819    KXJ80763.1    GAPW01004499    JAC09099.1    CM000070    KRS99886.1    CH954182    EDV54098.1   

Proteomes

UP000053240    UP000007819    UP000005205    UP000009046    UP000007266    UP000053097    + More
UP000002358    UP000009192    UP000002320    UP000008792    UP000007798    UP000092553    UP000007801    UP000095301    UP000095300    UP000002282    UP000001070    UP000001292    UP000192221    UP000268350    UP000008820    UP000092443    UP000092445    UP000092444    UP000000304    UP000000803    UP000069940    UP000249989    UP000001819    UP000008711   

PRIDE

Q9VCV1   

Pfam

PF00822   PMP22_Claudin

Interpro

IPR015664   P53_induced        + More
IPR004031   PMP22/EMP/MP20/Claudin       

ProteinModelPortal

A0A194RC82   A0A0A9YAK7   A0A2H8TMB3   J9JQQ8   A0A158NB47   A0A0C9RY15   + More
E0VCG3   A0A139WBQ2   E9J006   A0A026W1Y3   A0A1L8D8N2   A0A1Y1KNE9   A0A1B6GWQ5   A0A1L8D8X7   A0A1B6IVK7   A0A2S2QWQ8   K7IVH9   A0A0P4WJB9   A0A1B6MJZ0   A0A0A1WQN3   A0A0K8UB50   A0A034VKH6   W8BS79   A0A336MHU7   A0A1B6M2K5   A0A0Q9WYR2   A0A224XT87   A0A069DX37   A0A034VIU2   A0A1Q3FBY0   B0XA51   W8BLR1   B4LXC2   B4N9Q4   A0A0M4EPG3   A0A0P8XZR6   A0A1B6CXG9   A0A1I8MWC8   A0A1I8Q7M0   A0A0R1E9D0   U5EY49   B4JIE9   B4KAC0   B4IQP5   A0A1Q3FVL6   A0A1W4V8P2   A0A0Q9WTM5   A0A1B6DFK5   B4HET1   A0A3B0KH50   B3LZR1   B4PME8   Q17L63   A0A1A9XG99   A0A1A9ZHM5   D3TS26   B4R0Q4   Q9VCV1   A0A1I8Q7J7   A0A182H7W2   A0A1I8MWC9   A0A023ELH6   A0A0R3NJQ0   A0A1W4VKE7   B3P8K3  

KEGG

101736066    no KO assigned | (RefSeq) transmembrane protein 47

GO

GO:0016021   GO:0030054   GO:0007163   GO:0005918  

PANTHER

PTHR14399  

Length:

181

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

88.15767

Exp number, first 60 AAs:

22.01721

Total prob of N-in:

0.99531

POSSIBLE N-term signal

sequence

inside

1  -  12

TMhelix

13  -  35

outside

36  -  78

TMhelix

79  -  101

inside

102  -  112

TMhelix

113  -  135

outside

136  -  149

TMhelix

150  -  169

inside

170  -  181

 

 

Pi

177.294294

Theta

169.769192

Tajima's D

0.070298

CLR

0.514069

CSRT

0.386580670966452

Interpretation

Uncertain