Gene

KWMTBOMO04496

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr8(+):8131908-8132473      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.635

CDS

ATGTATGGTTGCGAAACGTGGACCCTGAAAGAGGACACTACAAGACGCCTACAGGCATTCGAGATGTGGTGCTACCGTCGCATGTTACGCATTGGTTGGACGCAGAGGGTCAGGAACGAAACCGTGCTTCAGCGCGTTCATATGTCCCGGAAAATGCTGCCTGCTATCAAAAAGCGCAAGATAGAGTATCTCGGCCACGTGCTCAGGAACGATCGATACATGCTGCTCCAGCTGATAATTAGGGGCAAAGTGGACGGAAAGAGACGTGCTGGGCGAAGAAAGAAATCATGGCTCCGGAATATCCGGCAGTGGACCGGTATTGCCTCCGTCGAACAGCTGTTCCGGCTGGCTGCAGATAAAAACGAATATAGAAAGCTAACGGCCAACCTTCAGGATTGA

Protein

MYGCETWTLKEDTTRRLQAFEMWCYRRMLRIGWTQRVRNETVLQRVHMSRKMLPAIKKRKIEYLGHVLRNDRYMLLQLIIRGKVDGKRRAGRRKKSWLRNIRQWTGIASVEQLFRLAADKNEYRKLTANLQD

Uniprot

D5LB38   A0A2A4J795   A0A151IIH7   A0A146L0Z1   A0A0K8T3U8   A0A0A9VZT6   + More
A0A0A9XCF5   A0A0J7KRQ5   A0A0A9XXL9   A0A0J7KZE8   A0A2A4JBK9   A0A2H1V1U0   A0A2S2QAF2   J9LIJ7   A0A2S2NMQ2   A0A2W1BSS7   A0A2S2P9Y7   A0A2S2QJK3   A0A2A4JXP9   H2YWZ6   H3B2Y3   A0A3S1HJZ0   A0A2S2PZ46   H2YWZ5   A0A0B7BT11   X1D4L4   A0A2S2PJ80   A0A0B7BVF2   A0A2S2PJ33   A0A0B7BSZ9   A0A0B7BT80   A0A0B7BUR9   W4Y921   A0A067R1I3   A0A0A9WMP5   A0A2S2PMS6   A0A3S3NR17   A0A3S3RLW1   A0A067QXS5   A0A2S2NX31   A0A0B7BVD9   A0A2J7RM57   A0A067QUH9   A0A0B7BVD3   A0A2S2QE77   A0A3S1CD12   A0A0B7BSB6   A0A067RQM5   A0A3S3P648   A0A067R8J7   A0A076N1B6   A0A2J7QV96   A0A2J7RG81   A0A076N3Z4   A0A3S1A2L0   A0A067QJX4   A0A2J7QX30   A0A2J7PNF2   W5NMM5   A0A2J7PGF8   A0A3S0ZE77   A0A2J7Q676   A0A0K8S9L8   A0A3S1AZH6   A0A2J7R045   A0A067QZY5   A0A2J7QSD2   A0A2J7Q6A8   A0A0A9WVQ5   W5NIE2   A0A2J7PVX9   A0A2G8L4W3   A0A146LUY8   A0A2J7PN37  

Pubmed

20470440    26823975    25401762    28756777    9215903    24624126    + More
24845553    29023486   

EMBL

GU815089    ADF18552.1    NWSH01002736    PCG67606.1    KQ977522    KYN02133.1    + More
GDHC01017214    JAQ01415.1    GBRD01005612    JAG60209.1    GBHO01041897    JAG01707.1    GBHO01028834    JAG14770.1    LBMM01003995    KMQ92919.1    GBHO01020011    GDHC01013600    JAG23593.1    JAQ05029.1    LBMM01001656    KMQ95932.1    NWSH01001998    PCG69477.1    ODYU01000306    SOQ34818.1    GGMS01004979    MBY74182.1    ABLF02012409    ABLF02012412    GGMR01005851    MBY18470.1    KZ149985    PZC75696.1    GGMR01013640    MBY26259.1    GGMS01008711    MBY77914.1    NWSH01000469    PCG76200.1    AFYH01119920    RQTK01000360    RUS81011.1    GGMS01001437    MBY70640.1    HACG01049494    HACG01049495    CEK96359.1    CEK96360.1    BART01031562    GAH15691.1    GGMR01016881    MBY29500.1    HACG01049490    HACG01049491    CEK96355.1    CEK96356.1    GGMR01016842    MBY29461.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    AAGJ04161766    KK852779    KDR16678.1    GBHO01034555    JAG09049.1    GGMR01018096    MBY30715.1    NCKU01012182    RWS00163.1    NCKU01008836    RWS01655.1    KK853131    KDR10935.1    GGMR01009131    MBY21750.1    HACG01049255    CEK96120.1    NEVH01002574    PNF41923.1    KK852941    KDR13536.1    HACG01049245    CEK96110.1    GGMS01006790    MBY75993.1    RQTK01000058    RUS89376.1    HACG01049249    CEK96114.1    KK852482    KDR22935.1    NCKU01004395    RWS06003.1    KK852811    KDR15914.1    KF881087    AIJ27486.1    NEVH01010478    PNF32508.1    NEVH01004403    PNF39833.1    KF881086    AIJ27485.1    RQTK01000357    RUS81065.1    KK853249    KDR09341.1    NEVH01009398    PNF33135.1    NEVH01023953    PNF17874.1    AHAT01022938    NEVH01025635    PNF15414.1    RQTK01000625    RUS76894.1    NEVH01017535    PNF24084.1    GBRD01015972    GBRD01015971    GBRD01015970    JAG49854.1    RQTK01000685    RUS76136.1    NEVH01008300    PNF34184.1    KK852843    KDR15156.1    NEVH01011876    PNF31501.1    NEVH01017534    PNF24114.1    GBHO01033031    GBHO01015473    GBHO01015472    GBHO01015471    GBHO01015469    GBHO01013134    GBHO01013133    GBHO01013129    GBHO01013128    JAG10573.1    JAG28131.1    JAG28132.1    JAG28133.1    JAG28135.1    JAG30470.1    JAG30471.1    JAG30475.1    JAG30476.1    AHAT01009145    NEVH01020940    PNF20497.1    MRZV01000221    PIK55282.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    NEVH01023958    PNF17737.1   

Proteomes

UP000218220    UP000078542    UP000036403    UP000007819    UP000007875    UP000008672    + More
UP000271974    UP000007110    UP000027135    UP000285301    UP000235965    UP000018468    UP000230750   

PRIDE

D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036640   ABC1_TM_sf       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219        + More
SSF90123   SSF90123       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB38   A0A2A4J795   A0A151IIH7   A0A146L0Z1   A0A0K8T3U8   A0A0A9VZT6   + More
A0A0A9XCF5   A0A0J7KRQ5   A0A0A9XXL9   A0A0J7KZE8   A0A2A4JBK9   A0A2H1V1U0   A0A2S2QAF2   J9LIJ7   A0A2S2NMQ2   A0A2W1BSS7   A0A2S2P9Y7   A0A2S2QJK3   A0A2A4JXP9   H2YWZ6   H3B2Y3   A0A3S1HJZ0   A0A2S2PZ46   H2YWZ5   A0A0B7BT11   X1D4L4   A0A2S2PJ80   A0A0B7BVF2   A0A2S2PJ33   A0A0B7BSZ9   A0A0B7BT80   A0A0B7BUR9   W4Y921   A0A067R1I3   A0A0A9WMP5   A0A2S2PMS6   A0A3S3NR17   A0A3S3RLW1   A0A067QXS5   A0A2S2NX31   A0A0B7BVD9   A0A2J7RM57   A0A067QUH9   A0A0B7BVD3   A0A2S2QE77   A0A3S1CD12   A0A0B7BSB6   A0A067RQM5   A0A3S3P648   A0A067R8J7   A0A076N1B6   A0A2J7QV96   A0A2J7RG81   A0A076N3Z4   A0A3S1A2L0   A0A067QJX4   A0A2J7QX30   A0A2J7PNF2   W5NMM5   A0A2J7PGF8   A0A3S0ZE77   A0A2J7Q676   A0A0K8S9L8   A0A3S1AZH6   A0A2J7R045   A0A067QZY5   A0A2J7QSD2   A0A2J7Q6A8   A0A0A9WVQ5   W5NIE2   A0A2J7PVX9   A0A2G8L4W3   A0A146LUY8   A0A2J7PN37  

KEGG

101739063    no KO assigned | (RefSeq) uncharacterized LOC101739063

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006355  

Length:

132

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01739

Exp number, first 60 AAs:

0

Total prob of N-in:

0.31073

outside

1  -  132

 

 

Pi

250.875097

Theta

145.997904

Tajima's D

2.182205

CLR

0

CSRT

0.907054647267637

Interpretation

Uncertain