SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04494
Pre Gene Modal
BGIBMGA014213
Annotation
hypothetical_protein_TcasGA2_TC001839_[Tribolium_castaneum]
Location in the cell
Nuclear   Reliability : 4.353
 

Sequence

CDS
ATGATTCGAGACTACTTGTTAGCCCTTTCCGCAGTGACCAAATCAACGTCAATCCGCTTCATTTCTCGCATTTCCAACTCGAGAATCTGCGTGTACTTGGACTCAAAACAAACAGCTGACGAATTGGTTGACGTCATTAAAAACGTTAAAGTGAAAGACCACGTATTGGAGATTCGGCCGCTGATAACAAGAAACAAACGTATCGTTTTATCCAACGTTTGCCCCATAATTCCGCACGATATCTTAGAAGAAAAATTTAATGAAATGGGTATTAAAGTATTGTCTCCCATAACATTCATGAAAGTGGGCATCCCGGACCCTGGTTTTTCACACATTATGAGCTTTAGGAGACAAGTATACGTTTCCCCTGAGGATGAAAAAAGATTACCAGAATCGATGCAAATTAACTATGATGAAACCAATTATTGGATTTATATTACAAACGAAACAATGAAATGCTTTGTATGTAATGGAATGGGACACTTGGCAAAATACTGTCCGCAAAGCAGTCAACAGGTTCTTGGTACCAAAGGCCCTAACAACCTCACGCAAGACAATTCAACTACTTCCAATGACACTACAGTCGAATCCAACAAGCTACCGTCACAGTCTCTCAATTCTACAATTAATCTTGAAATAAACCAAATCTACCCCCCTCCTGAAATTTCCAAACCGCAAGTACCAACAAACTTACTACCACACAATAAATTTGACATATACAAAGGTGTTAAGCGGATTCATCCATCTACCTCTTCAGAACCATCACAACCGGAAATAAATCAAGCTGAACCTACTTTAGATGACAGTAATATTATAGTCAGTGATTACACGGATGAAACCGACAGCAATTGGTCTCTGGACGAAGAACTAAAGAAGACCCCTAAGTCACTCAAGAAGAAGAAGAAAACTCTCGATGACAGAAGTGAAGAACAAGTTTGGAAGGATATTAAAACAGAGCTGGATCAGTCAGAAACACAACCTCACTTCCCACTCACCGTAGACCAGTTTATTAGTTTTTTAGATAATTCCCGTAGCAAACAAAATCTTCAAGAACTTATCAAAGACTATACGGATGATATCCCGGATTTAATTGATATGTGCACGTTTCTCCGCACTAAAATGAATTTAAATAGGAACCTCAAAAATAGATGTACAAGATTAGTTAAGAAACTAGAACTTATCAAACTGTTAGAAACCAGTAACAAGCCATAG
Protein
MIRDYLLALSAVTKSTSIRFISRISNSRICVYLDSKQTADELVDVIKNVKVKDHVLEIRPLITRNKRIVLSNVCPIIPHDILEEKFNEMGIKVLSPITFMKVGIPDPGFSHIMSFRRQVYVSPEDEKRLPESMQINYDETNYWIYITNETMKCFVCNGMGHLAKYCPQSSQQVLGTKGPNNLTQDNSTTSNDTTVESNKLPSQSLNSTINLEINQIYPPPEISKPQVPTNLLPHNKFDIYKGVKRIHPSTSSEPSQPEINQAEPTLDDSNIIVSDYTDETDSNWSLDEELKKTPKSLKKKKKTLDDRSEEQVWKDIKTELDQSETQPHFPLTVDQFISFLDNSRSKQNLQELIKDYTDDIPDLIDMCTFLRTKMNLNRNLKNRCTRLVKKLELIKLLETSNKP

Summary

Pfam
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF57756   SSF57756       
ProteinModelPortal

Ontologies

Topology

Length:
403
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01384
Exp number, first 60 AAs:
0.01149
Total prob of N-in:
0.00364
outside
1  -  403
 
 

Population Genetic Test Statistics

Pi
0.298575
Theta
0.756271
Tajima's D
0
CLR
5.946438
CSRT
0.447877606119694
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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