Silkworm Genome Informatics Database

Gene

KWMTBOMO04494

Pre Gene Modal

BGIBMGA014213

Annotation

hypothetical_protein_TcasGA2_TC001839_[Tribolium_castaneum]

Location

Bomo_Chr8(+):8024520-8025805 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.353

CDS

ATGATTCGAGACTACTTGTTAGCCCTTTCCGCAGTGACCAAATCAACGTCAATCCGCTTCATTTCTCGCATTTCCAACTCGAGAATCTGCGTGTACTTGGACTCAAAACAAACAGCTGACGAATTGGTTGACGTCATTAAAAACGTTAAAGTGAAAGACCACGTATTGGAGATTCGGCCGCTGATAACAAGAAACAAACGTATCGTTTTATCCAACGTTTGCCCCATAATTCCGCACGATATCTTAGAAGAAAAATTTAATGAAATGGGTATTAAAGTATTGTCTCCCATAACATTCATGAAAGTGGGCATCCCGGACCCTGGTTTTTCACACATTATGAGCTTTAGGAGACAAGTATACGTTTCCCCTGAGGATGAAAAAAGATTACCAGAATCGATGCAAATTAACTATGATGAAACCAATTATTGGATTTATATTACAAACGAAACAATGAAATGCTTTGTATGTAATGGAATGGGACACTTGGCAAAATACTGTCCGCAAAGCAGTCAACAGGTTCTTGGTACCAAAGGCCCTAACAACCTCACGCAAGACAATTCAACTACTTCCAATGACACTACAGTCGAATCCAACAAGCTACCGTCACAGTCTCTCAATTCTACAATTAATCTTGAAATAAACCAAATCTACCCCCCTCCTGAAATTTCCAAACCGCAAGTACCAACAAACTTACTACCACACAATAAATTTGACATATACAAAGGTGTTAAGCGGATTCATCCATCTACCTCTTCAGAACCATCACAACCGGAAATAAATCAAGCTGAACCTACTTTAGATGACAGTAATATTATAGTCAGTGATTACACGGATGAAACCGACAGCAATTGGTCTCTGGACGAAGAACTAAAGAAGACCCCTAAGTCACTCAAGAAGAAGAAGAAAACTCTCGATGACAGAAGTGAAGAACAAGTTTGGAAGGATATTAAAACAGAGCTGGATCAGTCAGAAACACAACCTCACTTCCCACTCACCGTAGACCAGTTTATTAGTTTTTTAGATAATTCCCGTAGCAAACAAAATCTTCAAGAACTTATCAAAGACTATACGGATGATATCCCGGATTTAATTGATATGTGCACGTTTCTCCGCACTAAAATGAATTTAAATAGGAACCTCAAAAATAGATGTACAAGATTAGTTAAGAAACTAGAACTTATCAAACTGTTAGAAACCAGTAACAAGCCATAG

Protein

MIRDYLLALSAVTKSTSIRFISRISNSRICVYLDSKQTADELVDVIKNVKVKDHVLEIRPLITRNKRIVLSNVCPIIPHDILEEKFNEMGIKVLSPITFMKVGIPDPGFSHIMSFRRQVYVSPEDEKRLPESMQINYDETNYWIYITNETMKCFVCNGMGHLAKYCPQSSQQVLGTKGPNNLTQDNSTTSNDTTVESNKLPSQSLNSTINLEINQIYPPPEISKPQVPTNLLPHNKFDIYKGVKRIHPSTSSEPSQPEINQAEPTLDDSNIIVSDYTDETDSNWSLDEELKKTPKSLKKKKKTLDDRSEEQVWKDIKTELDQSETQPHFPLTVDQFISFLDNSRSKQNLQELIKDYTDDIPDLIDMCTFLRTKMNLNRNLKNRCTRLVKKLELIKLLETSNKP

Uniprot

H9JT23 Q76IM0

Pubmed

19121390 12949131

EMBL

BABH01030666 AB097139 BAC82610.1

Proteomes

UP000005204

PRIDE

H9JT23

Pfam

PF00098 zf-CCHC

Interpro

IPR001878 Znf_CCHC + More
IPR036875 Znf_CCHC_sf

SUPFAM

SSF57756 SSF57756

ProteinModelPortal

H9JT23 Q76IM0

KEGG

102466386 no KO assigned | (RefSeq) Mir2835, bmo-mir-2835; microRNA 2835

GO

GO:0003676 GO:0008270 GO:0003995 GO:0050660 GO:0006310 GO:0006418 GO:0009058 GO:0016742 GO:0003824

Length:

403

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01384

Exp number, first 60 AAs:

0.01149

Total prob of N-in:

0.00364

outside

1 - 403

Pi

0.298575

Theta

0.756271

Tajima's D

0

CLR

5.946438

CSRT

0.447877606119694

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree