Gene

KWMTBOMO04484

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr8(-):7542084-7546192      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.798

CDS

ATGGAGCCTCGCCGAGTTCGAGCGGTTTCTGGGCGGGCTCGAGACGCTTTTACACCGCCTCGGGTCCCGCCCTGTCATCGTCGCGGGGGACTTCAATGCCAAGTGCACGGCTTGGGGTTCCCCCGCACGGATGCGCGAGGCGAGGCCCTTTCGGAGTGGGCGATCGCGACCGGCCTCTGTCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGGAATCCCACGTGGACGTGACGTTCGCGTCCCCGTCCGCCGTGCGCCGCACCCGCGGCTGGCGCGTACTCGAGGGGGCGGAGACGCTCTCGGACCACAGATACGTCCGATTTGAGCTCTCCGCCTCCTCCTTGTCGTCGTCGTCAGCCGCGGGCGCCCGCGGTGAGGAGGAGCTCCCGCAAGGTGCGCCCCGTTCGTTCCCCAGGTGGGCCTTGAAACGAATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGTGATGCCGCCATGCCCCGGGTCGGCCCCCGAGCACCACGTGGGGGTGCGTTCTGGTGGTCGCCCGAGATCGCAAGACTCCGCGAGGAGTGCGTGAGGGCGCGCCGCCGGAGCGCACGCCACCGCCGCCGCCGTCGTCGCGACGCTACGTTCGCGGAGACGGCGGCCCGGCTGCACGCTGACTGTCGTCAAAAGCAGACGGCGCTGCAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCTGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATAGTTTCCGCGCTTTTCCCGCCGGCAGAGGGGGGGGACTTTGAGCCCCCCCAGATGGACGCCACGTGGGGCACGCCTCCGCGTCGCCCCAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAGAATGAGAGCGAAGGACGCGGCCCCCGGCCCTGACGGTGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCTGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAGGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAATACGGCTTCAGAGAGGGCCGCTCGACTATCGACGCAATTCTGCGCGTGCGGGCCCTCTCCGATGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTACCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGGCGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCCGTCCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCATTCGGGGACCCCTCCCCGGGCTCAGCGTAATTTGTTACGCTGACGACACGTTGGTCGTAGCTCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACCAGGATCCGACGGTTGGGGCTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGTTATTTCACGGGCCGGGACGAGCGCCGCCTCTGGGTGCCCACCTCGTGATCGGAGGTGTCCGCGTCGGGGTCGGGGTGACCGGTCTTCGGTACCTCGGCCTCGAACTGGACGGTCGGTGGAGCTTCCGCGCTCACTTCGAAAAATTGGGCCCTCGGCTGATGGCGACGGCCGGCTCTCTGAGCCGGCTTCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGCGCTCCCGTATGGTGCCACGCCCTGACCCGCGAGAACGTCGCGGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTTCGCTCTAGGGGGGAAGGGCGCCCCGGCGAAGGTGTAGTTCGAGCGCGGAGGCTCCACTCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGAACCGTCGAGGCGGTCCGCCCGGTTCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTAACGCAGATGCTTACCGGCCATGGTTGTTTCGGCCGGTACTTGCACAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACATACATTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATTGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATATCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG

Protein

MEPRRVRAVSGRARDAFTPPRVPPCHRRGGLQCQVHGLGFPRTDARGEALSEWAIATGLCLLNRGTVATCVRWNGESHVDVTFASPSAVRRTRGWRVLEGAETLSDHRYVRFELSASSLSSSSAAGARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDWFRGTMANICDAAMPRVGPRAPRGGAFWWSPEIARLREECVRARRRSARHRRRRRRDATFAETAARLHADCRQKQTALQLAIGEAKKQSMKTLLESLDEDPWGRPYKMVRRKLQPWALPVTERLQPRQLREIVSALFPPAEGGDFEPPQMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSRMRAKDAAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGAMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGVIRGPLPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALLFHGPGRAPPLGAHLVIGGVRVGVGVTGLRYLGLELDGRWSFRAHFEKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRENVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGEGRPGEGVVRARRLHSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLHKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRPL

Uniprot

Q868Q4   Q8MY31   Q8MY35   Q8MY33   Q8MY27   A0A0J7N1D9   + More
O01419   A0A2W1C3J5   Q8MY25   A0A0J7KJG6   A0A0J7KIY5   A0A0J7KIM6   A0A0J7KF37   A0A0J7KQK3   A0A0J7KJH4   A0A3S2LNH8   A0A0J7K3F1   A0A0J7KRB8   A0A0J7KYD2   A0A0J7KPR0   A0A0J7KF40   A0A0J7NAV8   A0A0J7N0R3   A0A0J7KFH2   A0A0J7KPZ3   A0A0J7KWU5   A0A0J7MY17   A0A0J7K3R6   A0A0J7MWN5   A0A0J7KLH8   A0A0J7KF91   A0A0J7NFZ0   A0A0J7KQY4   A0A0J7KLT9   A0A0J7NMN5   A0A0J7KIS5   A0A2S2PEZ7   J9LJ80   J9LVU7   X1WJY4   A0A2S2NJ82   J9KJG8   X1WZ64   A0A0J7NJI3   J9KM84   J9KNS1   J9JWJ3   W8ANK7   A0A2H8TR36   W8ADE4   A0A0J7N8R4   A0A0J7KCE1   A0A142LX45   D6WC19   A0A034WR48   J9KUM6   A0A2S2P7D1   A0A0J7KCD9   J9KNN8   J9KV04   J9JY94   Q9N9Z1   T1DCM0   A0A2H8TIE5   J9L6Z9   A0A142LX43   A0A139W9J0   A0A2M4ADW9   A0A023EW96   X1WT13   J9KWM9   A0A2S2P488   X1WMW4   A0A0K8VPH1   T1DG89   A0A1W7R6I9   F7IYV6   A0A2S2PRL8   T1DG59  

Pubmed

12644555    9092665    28756777    24495485    25527032    18362917    + More
19820115    25348373    24330624    24945155   

EMBL

AB090825    BAC57926.1    AB078931    BAC06456.1    AB078929    BAC06452.1    + More
AB078930    BAC06454.1    AB078935    BAC06462.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    KZ149896    PZC78733.1    AB078936    BAC06464.1    LBMM01006671    KMQ90407.1    LBMM01006954    KMQ90166.1    LBMM01007036    KMQ90099.1    LBMM01008448    KMQ88867.1    LBMM01004272    KMQ92618.1    LBMM01006657    KMQ90417.1    RSAL01003504    RVE40273.1    LBMM01015025    KMQ84953.1    LBMM01003988    KMQ92922.1    LBMM01002052    KMQ95336.1    LBMM01004634    KMQ92224.1    LBMM01008422    KMQ88894.1    LBMM01007425    KMQ89740.1    LBMM01012412    KMQ86235.1    LBMM01008278    KMQ89009.1    LBMM01004505    KMQ92346.1    LBMM01002480    KMQ94776.1    LBMM01014122    KMQ85315.1    LBMM01015018    KMQ84954.1    LBMM01015285    KMQ84870.1    LBMM01005948    KMQ91066.1    LBMM01008445    KMQ88871.1    LBMM01005474    KMQ91485.1    LBMM01004262    KMQ92649.1    LBMM01005733    KMQ91252.1    LBMM01003245    KMQ93755.1    LBMM01006977    KMQ90149.1    GGMR01015159    MBY27778.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    ABLF02034925    ABLF02011238    GGMR01004600    MBY17219.1    ABLF02041886    ABLF02011183    ABLF02041884    LBMM01004261    KMQ92650.1    ABLF02018942    ABLF02041885    ABLF02018808    ABLF02013358    ABLF02013361    ABLF02054869    GAMC01020517    JAB86038.1    GFXV01003903    MBW15708.1    GAMC01020519    GAMC01020515    JAB86040.1    LBMM01008226    KMQ89040.1    LBMM01009535    KMQ88053.1    KU543683    AMS38371.1    KQ971309    EEZ99146.1    GAKP01002292    JAC56660.1    ABLF02041557    GGMR01012748    MBY25367.1    LBMM01009610    KMQ87992.1    ABLF02023257    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    ABLF02007989    AJ278684    CAB99192.1    GALA01001777    JAA93075.1    GFXV01002090    MBW13895.1    ABLF02021100    KU543682    AMS38369.1    KQ972226    KYB24577.1    GGFK01005660    MBW38981.1    GAPW01000192    JAC13406.1    ABLF02014378    ABLF02011927    GGMR01011682    MBY24301.1    ABLF02059310    GDHF01029467    GDHF01011533    JAI22847.1    JAI40781.1    GALA01001776    JAA93076.1    GEHC01000915    JAV46730.1    AB593326    BAK38647.1    GGMR01019493    MBY32112.1    GALA01000302    JAA94550.1   

Proteomes

UP000036403    UP000283053    UP000007819    UP000007266   

PRIDE

Q868Q4    O01419    Q9N9Z1   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF01553   Acyltransferase
PF01421   Reprolysin
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10    

ProteinModelPortal

Q868Q4   Q8MY31   Q8MY35   Q8MY33   Q8MY27   A0A0J7N1D9   + More
O01419   A0A2W1C3J5   Q8MY25   A0A0J7KJG6   A0A0J7KIY5   A0A0J7KIM6   A0A0J7KF37   A0A0J7KQK3   A0A0J7KJH4   A0A3S2LNH8   A0A0J7K3F1   A0A0J7KRB8   A0A0J7KYD2   A0A0J7KPR0   A0A0J7KF40   A0A0J7NAV8   A0A0J7N0R3   A0A0J7KFH2   A0A0J7KPZ3   A0A0J7KWU5   A0A0J7MY17   A0A0J7K3R6   A0A0J7MWN5   A0A0J7KLH8   A0A0J7KF91   A0A0J7NFZ0   A0A0J7KQY4   A0A0J7KLT9   A0A0J7NMN5   A0A0J7KIS5   A0A2S2PEZ7   J9LJ80   J9LVU7   X1WJY4   A0A2S2NJ82   J9KJG8   X1WZ64   A0A0J7NJI3   J9KM84   J9KNS1   J9JWJ3   W8ANK7   A0A2H8TR36   W8ADE4   A0A0J7N8R4   A0A0J7KCE1   A0A142LX45   D6WC19   A0A034WR48   J9KUM6   A0A2S2P7D1   A0A0J7KCD9   J9KNN8   J9KV04   J9JY94   Q9N9Z1   T1DCM0   A0A2H8TIE5   J9L6Z9   A0A142LX43   A0A139W9J0   A0A2M4ADW9   A0A023EW96   X1WT13   J9KWM9   A0A2S2P488   X1WMW4   A0A0K8VPH1   T1DG89   A0A1W7R6I9   F7IYV6   A0A2S2PRL8   T1DG59  

PDB

6AR3     E-value=0.000178471,     Score=110

KEGG

105842745    no KO assigned | (RefSeq) transcription initiation factor TFIID subunit 4-like

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0004519  

Length:

985

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11181

Exp number, first 60 AAs:

0.00299

Total prob of N-in:

0.00038

outside

1  -  985

 

 

Pi

1.18884

Theta

0.807813

Tajima's D

0

CLR

0.427879

CSRT

0.444977751112444

Interpretation

Uncertain