Gene

KWMTBOMO04478

Pre Gene Modal

BGIBMGA005367

Annotation

PREDICTED:_cell_cycle_checkpoint_protein_RAD17_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr8(-):7324489-7333762      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.094

CDS

ATGCTAAAAAAGCATAAGACCTGGTTTAAACCAATGTTTGATTTTGATGAAACTGAGCCTCCACCGCAGAAGCTTAAAAGTGATGTAAACAAACAAGGTACGAGTTCACCAGCCAAGTTTTCAAAATCGAACACTATTAAACCAATGATTTTTAATATCATTGATCAAAACCACATTCGGAATTTTGATCCGGTCAATATCAATGACTTGGCCATACACAATAAAAAGGTTCAAGAAGTTGAAGATTGGATATTAGGTAACATAAAGAAGAATACAAGTGAAATGTTGCTCCTTACTGGACCAGTCGGCTGCGGCAAGAGTGTTACAGTGCTGATTATAGCTAAAAAACATAATGTAAAAATTACAGAGTGGATTACACCTATTGATATTGAATTCCCTAATGATAATGGAGAGTTTGAATTTAAAGTTAAACAATCTACTCAATTTTTGGATTTTATTTTAAATGCAGCCAACTTTACTTCACTGCTTGATAATAATGACAGAAAACTGGTGTTAGTAGAAGATTTCCCAAACACCTTTATGAGAACCCCTTCAGAATTAGTTTATGTATTACAACAATACAAACAGAGGGCAAAATCGCCAATTGTTTTCATTTGTTCTGAATCAAGTACAGACAAAAAGACCACCAGTGGAAACTTATTTAGTGATCAACTGAAGAGCCAACTGAATATTCATCATATTAGTTTTAATGGTGTTTCGACAACCGGCTTACGGTCTGCATTAAAACGAATGGCAGAGATAATAAGTAAAAAGTACAAATCAATGTACAATGCTCCTACAAGTGACCTGATTGAATGTGTTGTCAACTCTTCAGCAGGCGACGTCAGGTCAGCCGTAACAAATTTGCATTTTGCATGTTTAAAAGGTACTGATCAAAGTTTAGAAACCAGTATAATAACGGAAAAATACCAGAAAACTAAAACTAAGAAGAAAAAACCAAGTAGCAAATTTACTTCAATAGGAAAAGATCAAAGTATCAATATTCTTCATGGAGTTGGAAGAGTTTTAAATCCTAGAGTTGTTGATGTTAACGGAAGAAGTCAATTTACACACTCTCCAAGAGAAATAGTAGAACAATTTATTTCTCAACCAAGCTCTTTTGTGAATTTTATTGAAGAAAACTACATGCCACATTTCTCAAATTCAGCTCAAATAGATAGAGCTGCTTCTACTCTTAGCGACGCTGTCTTCATGCTTGCGGAATGGAGGGAAAAAGTGTGTCAAGAATATGGGTTATATTGCGCAGTAGCTGGTCTAATGCTGGCTAACAAAGACCCTGTCTCAGCTTGGAATCCTGTACGTGGGCCTAAAAATATGAAAATCACTTACCCGGTCCCTTCAGAATTGCAACTTTTAGAAGAAAATTATTTGTACAAAGGAAAAACTCTTGTTTCTGATTACCAAACCTTTTGTAAAATTATTAACAGTAATTATGATTAA

Protein

MLKKHKTWFKPMFDFDETEPPPQKLKSDVNKQGTSSPAKFSKSNTIKPMIFNIIDQNHIRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLIIAKKHNVKITEWITPIDIEFPNDNGEFEFKVKQSTQFLDFILNAANFTSLLDNNDRKLVLVEDFPNTFMRTPSELVYVLQQYKQRAKSPIVFICSESSTDKKTTSGNLFSDQLKSQLNIHHISFNGVSTTGLRSALKRMAEIISKKYKSMYNAPTSDLIECVVNSSAGDVRSAVTNLHFACLKGTDQSLETSIITEKYQKTKTKKKKPSSKFTSIGKDQSINILHGVGRVLNPRVVDVNGRSQFTHSPREIVEQFISQPSSFVNFIEENYMPHFSNSAQIDRAASTLSDAVFMLAEWREKVCQEYGLYCAVAGLMLANKDPVSAWNPVRGPKNMKITYPVPSELQLLEENYLYKGKTLVSDYQTFCKIINSNYD

Uniprot

A0A2H1VV39   A0A2A4JZI0   A0A3S2M0E2   A0A194QSF4   A0A2A4K0G2   A0A212ERE7   + More
A0A194PNX6   B4JH55   B4LXB1   A0A1A9XC36   A0A1B0BHR7   A0A1A9VIJ7   A0A1B0FLJ0   B4KA38   A0A1A9WCB6   A0A1I8MN85   A0A1B0A9Z7   B4NJU3   A0A1I8P3C9   B4GNP9   B5DXR6   A0A0L0CC04   B4QZS6   B3P3M5   B3LW20   A0A0M5IZG9   A0A3B0JDB0   B4HEK1   Q7KND1   B4PSQ5   B8A3U8   O96532   A0A1W4V5S7   Q8SYV6   A0A0K8VAE2   A0A0A1XQZ8   A0A1Q3F982   A0A1B0GJ33   A0A034VVM9   B0W9K3   W8BY80   A0A034VXA3   A0A182HBR8   A0A0N8ES88   Q171F4   A0A1W4X1R9   A0A1Y1LRS7   A0A087ZR47   A0A1Y9G9I6   W5JMK7   A0A2A3E7J2   A0A310SVF5   A0A0M9A9I7   A0A1Y9IVK9   A0A182PJG1   A0A182MHR9   A0A0L7QLD9   A0A154PHH6   D6WXK2   A0A0J7KN03   A0A182KAT6   E2AHQ6   A0A182IBG4   A0A1S4GYX9   A0A182U0S0   A0A1B6CHY6   A0A232FC99   K7JF94   Q7Q8E2   A0A158NY25   A0A182V0Q6   A0A1J1HKG5   A0A1B6H1J3   A0A1B6JWH1   A0A182RK17   A0A1B6J882   F4WLQ3   A0A182QA32   A0A1B6LNP8   A0A182NGT0   E2BA60   A0A151II21   A0A1J1HFZ3   A0A182J0E3   A0A3Q3F1R3   A0A151JTH2   A0A1S3K9T0   A0A1S3KA59   A0A151X0W5   N6T698   A0A1S3JCP1   J9KAX6   A0A2S2NMK9   A0A0C9R170  

Pubmed

26354079    22118469    17994087    25315136    15632085    26108605    + More
9878245    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25830018    25348373    24495485    26483478    26999592    17510324    28004739    20920257    23761445    18362917    19820115    20798317    12364791    28648823    20075255    21347285    21719571    23537049   

EMBL

ODYU01004455    SOQ44342.1    NWSH01000327    PCG77407.1    RSAL01000088    RVE48211.1    + More
KQ461154    KPJ08417.1    PCG77408.1    AGBW02013068    OWR44024.1    KQ459599    KPI94449.1    CH916369    EDV92746.1    CH940650    EDW67789.1    JXJN01014542    CCAG010021492    CH933806    EDW16713.2    CH964272    EDW85055.1    CH479186    EDW39375.1    CM000070    EDY67507.3    JRES01000720    KNC28974.1    CM000364    EDX12924.1    CH954181    EDV48913.1    CH902617    EDV41553.1    CP012526    ALC45518.1    OUUW01000005    SPP80364.1    CH480815    EDW42158.1    AF076839    AF124503    AAC95521.1    AAD31692.1    CM000160    EDW97551.1    BT056240    ACL68687.1    AE014297    AAF55086.2    AY071291    AAL48913.1    GDHF01016527    JAI35787.1    GBXI01000920    JAD13372.1    GFDL01010904    JAV24141.1    AJWK01019254    GAKP01012453    JAC46499.1    DS231864    EDS40228.1    GAMC01002248    JAC04308.1    GAKP01012452    JAC46500.1    JXUM01126568    KQ567082    KXJ69627.1    GDUN01000146    JAN95773.1    CH477456    EAT40637.1    GEZM01048838    JAV76359.1    ADMH02000616    ETN65612.1    KZ288344    PBC27717.1    KQ759804    OAD62799.1    KQ435709    KOX79987.1    AXCM01008036    KQ414924    KOC59428.1    KQ434907    KZC11301.1    KQ971361    EFA07969.1    LBMM01005167    KMQ91768.1    GL439579    EFN67036.1    APCN01000686    AAAB01008944    GEDC01024288    JAS13010.1    NNAY01000459    OXU28242.1    AAZX01008339    EAA10117.2    ADTU01002955    CVRI01000002    CRK86950.1    GECZ01005752    GECZ01001228    JAS64017.1    JAS68541.1    GECU01004170    JAT03537.1    GECU01012336    JAS95370.1    GL888212    EGI64881.1    AXCN02002201    GEBQ01014758    JAT25219.1    GL446678    EFN87402.1    KQ977542    KYN02061.1    CRK86949.1    KQ981972    KYN31643.1    KQ982600    KYQ54026.1    APGK01050708    KB741176    ENN73193.1    ABLF02024419    GGMR01005749    MBY18368.1    GBYB01006642    JAG76409.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000007151    UP000053268    UP000001070    + More
UP000008792    UP000092443    UP000092460    UP000078200    UP000092444    UP000009192    UP000091820    UP000095301    UP000092445    UP000007798    UP000095300    UP000008744    UP000001819    UP000037069    UP000000304    UP000008711    UP000007801    UP000092553    UP000268350    UP000001292    UP000002282    UP000000803    UP000192221    UP000092461    UP000002320    UP000069940    UP000249989    UP000008820    UP000192223    UP000005203    UP000069272    UP000000673    UP000242457    UP000053105    UP000075920    UP000075885    UP000075883    UP000053825    UP000076502    UP000007266    UP000036403    UP000075881    UP000000311    UP000075840    UP000075902    UP000215335    UP000002358    UP000007062    UP000005205    UP000075903    UP000183832    UP000075900    UP000007755    UP000075886    UP000075884    UP000008237    UP000078542    UP000075880    UP000261660    UP000078541    UP000085678    UP000075809    UP000019118    UP000007819   

PRIDE

Q7KND1    O96532    Q8SYV6   

Pfam

PF12926   MOZART2        + More
PF06470   SMC_hinge
PF02463   SMC_N
PF00498   FHA

Interpro

IPR027417   P-loop_NTPase        + More
IPR004582   Checkpoint_prot_Rad17_Rad24       
IPR003593   AAA+_ATPase       
IPR024332   MOZART2       
IPR003395   RecF/RecN/SMC_N       
IPR036277   SMC_hinge_sf       
IPR010935   SMC_hinge       
IPR008984   SMAD_FHA_dom_sf       
IPR000253   FHA_dom       
IPR041741   SMC3_ABC_euk       

SUPFAM

SSF52540   SSF52540        + More
SSF75553   SSF75553       
SSF49879   SSF49879       

CDD

cd00060  FHA
cd03272  ABC_SMC3_euk

ProteinModelPortal

A0A2H1VV39   A0A2A4JZI0   A0A3S2M0E2   A0A194QSF4   A0A2A4K0G2   A0A212ERE7   + More
A0A194PNX6   B4JH55   B4LXB1   A0A1A9XC36   A0A1B0BHR7   A0A1A9VIJ7   A0A1B0FLJ0   B4KA38   A0A1A9WCB6   A0A1I8MN85   A0A1B0A9Z7   B4NJU3   A0A1I8P3C9   B4GNP9   B5DXR6   A0A0L0CC04   B4QZS6   B3P3M5   B3LW20   A0A0M5IZG9   A0A3B0JDB0   B4HEK1   Q7KND1   B4PSQ5   B8A3U8   O96532   A0A1W4V5S7   Q8SYV6   A0A0K8VAE2   A0A0A1XQZ8   A0A1Q3F982   A0A1B0GJ33   A0A034VVM9   B0W9K3   W8BY80   A0A034VXA3   A0A182HBR8   A0A0N8ES88   Q171F4   A0A1W4X1R9   A0A1Y1LRS7   A0A087ZR47   A0A1Y9G9I6   W5JMK7   A0A2A3E7J2   A0A310SVF5   A0A0M9A9I7   A0A1Y9IVK9   A0A182PJG1   A0A182MHR9   A0A0L7QLD9   A0A154PHH6   D6WXK2   A0A0J7KN03   A0A182KAT6   E2AHQ6   A0A182IBG4   A0A1S4GYX9   A0A182U0S0   A0A1B6CHY6   A0A232FC99   K7JF94   Q7Q8E2   A0A158NY25   A0A182V0Q6   A0A1J1HKG5   A0A1B6H1J3   A0A1B6JWH1   A0A182RK17   A0A1B6J882   F4WLQ3   A0A182QA32   A0A1B6LNP8   A0A182NGT0   E2BA60   A0A151II21   A0A1J1HFZ3   A0A182J0E3   A0A3Q3F1R3   A0A151JTH2   A0A1S3K9T0   A0A1S3KA59   A0A151X0W5   N6T698   A0A1S3JCP1   J9KAX6   A0A2S2NMK9   A0A0C9R170  

KEGG

101746448    K06662 cell cycle checkpoint protein | (RefSeq) cell cycle checkpoint protein RAD17

GO

GO:0006281   GO:0005634   GO:0003682   GO:0000077   GO:0000790   GO:0033314   GO:0051276   GO:0005694   GO:0005524  

PANTHER

PTHR12172  

Length:

486

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.27334

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02335

outside

1  -  486

 

 

Pi

19.775977

Theta

157.54135

Tajima's D

0.7086

CLR

0.571306

CSRT

0.578171091445428

Interpretation

Uncertain