Gene

KWMTBOMO04469  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005434

Annotation

replication_protein_A2_[Bombyx_mori]

Location

Bomo_Chr8(+):7146815-7149289      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.453 Mitochondrial   Reliability : 1.164

CDS

ATGTGGAATGATGATCCTTCTGGAGGTGGCTTCCTTAACACCACAAATCAATTTGGAAATACGGCAACACCCAAAAAAACTGGTCGTAGAGCGGCACGGACAGCACCTATAGTCATCAGGCAAGCTTTGCATTCTGGAGAAGAAGGTGTGAAAATATGGGGTACAGAAATTCAAATAGTGTCAATAGTTGCAAGAATCAGGAGCATTAGAATGCAAAGCACTAAAATAACATATACAATCCAAGATATAACAGGGAGGATGAGGGCTGTACTCTGGCTCGACCAAGAGGCTATGGAAGTTGAAGATACCTCATCACCTAAAGTTCAAGTAAATGATTACATACAAATTTACGGCAATGTGAAAACGAATAAAGGGACAAAAGTGCTCATGGCATTTAAGATAATGCCAGTTACTGATGTCAACATTATTACATTTCACTACTTTCAGTGCATTCATAATAAAATACAAATGGAAGCTGGCTCAAAGAAGGAAAAAAATATTCAAGATGTCCCAATTAACAACATGCTGCCTGCAAATTCAATGGTTGGAATTACTGAAACCTCTTCAGTGAATGGCTTAAATTCTCGTCAGATGATGGTCTTCAACCTTATCCGTGGCTCTACTGTTGAACAAGGAATTAGTAAACAAGATATGTATGCCTCACTGAAAGATCGAATGACAAAAGTTGAATTTGAAAACATTTTGGAATGGATGTGTGGAGAAGGTCATATCTACTCAACAATTGATGAAGAGCATTTTAGAGCAACTGATGCATTTTAA

Protein

MWNDDPSGGGFLNTTNQFGNTATPKKTGRRAARTAPIVIRQALHSGEEGVKIWGTEIQIVSIVARIRSIRMQSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQMEAGSKKEKNIQDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDAF

Uniprot

Q5TLD2   A0A1E1WUJ6   A0A194PM92   A0A2A4K049   A0A2H1WZS3   A0A194QTV0   + More
A0A0L7KQI2   A0A212FBU8   A0A1B0D3E9   A0A2J7REB5   N6TD17   J3JWX4   A0A1Y1MGG5   A0A182Q4Y9   B4MZU3   A0A0K8TSG2   B3MU71   B4JR57   B3NKW3   A0A0T6B760   A0A1W4UI71   B4KIC1   Q29LY7   B4G711   A0A182IPM5   U4UI09   A0A182NTV0   B4LQB3   A0ANM2   A0A3B0K0U6   Q8SXG3   E9GYP5   Q9VIH1   A0ANL0   B4IFI7   A0A0P4VYW3   C0MJ04   A0A182K5U0   A0ANL8   A0ANL2   B4P713   D6WX21   A0A182RMA2   A0A182P8L6   A0A0M4E519   A0A084VED1   T1P7P1   A0A0M4E1B0   A0A3R7LUP6   A0A1L8DX65   A0A182XLA8   A0A182Y3B8   R4G3R1   A0A182W6K4   A0A0P4VM52   A0A1I8NMN2   A0A2R7WXT6   C1BSH2   A0A069DR40   A0A1L8EFU7   A0A182VGI2   Q7PNC3   A0A182ICB5   A0A0L0CGK2   A0A182LD04   A0A0V0GBC5   A0A2M4ATH1   W5JT14   A0A2M4BYE1   A0A0P5F3S8   A0A0P4YSC0   A0A0P6JWM7   A0A2M4BY04   A0A0A1WZ20   R4WDH8   Q16GV5   L7M4D1   A0A151XAW1   C3KIU9   A0A1B0AGK2   A0A131YQS7   A0A146VAQ3   A0A1B6GMJ7   E1ZXE4   A0A3S1B3D3   W5M5H7   A0A182H2M4   A0A195BSP0   A0A0K8VFF1   A0A182F2K0   A0A1A9VYB6   A0A158NQK9   B0WHR5   U5EWK3   G3TD48   A0A1E1XHC3   A0A2Y9FFI2  

Pubmed

26354079    26227816    22118469    23537049    22516182    28004739    + More
17994087    26369729    15632085    16951084    22936249    21292972    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    19126864    26109357    26109356    17550304    18362917    19820115    24438588    25315136    25244985    27129103    26334808    12364791    14747013    17210077    26108605    20966253    20920257    23761445    25830018    23691247    17510324    25576852    26830274    20798317    26483478    21347285    28503490   

EMBL

AB194777    BAD69790.1    GDQN01000402    JAT90652.1    KQ459599    KPI94442.1    + More
NWSH01000327    PCG77396.1    ODYU01012305    SOQ58551.1    KQ461154    KPJ08425.1    JTDY01007411    KOB65219.1    AGBW02009268    OWR51212.1    AJVK01023516    NEVH01005277    PNF39167.1    APGK01035258    KB740923    ENN78229.1    BT127742    AEE62704.1    GEZM01032176    GEZM01032175    JAV84794.1    AXCN02000806    CH963920    EDW77878.1    GDAI01000299    JAI17304.1    CH902624    EDV33400.1    CH916372    EDV99387.1    CH954179    EDV54486.1    LJIG01009378    KRT83199.1    CH933807    EDW13418.1    CH379060    EAL33908.2    CH479180    EDW29210.1    KB632333    ERL92662.1    CH940649    EDW63363.1    AM294260    CM000361    CM002910    CAL26164.1    EDX05685.1    KMY91257.1    OUUW01000004    SPP79579.1    AY089651    AAL90389.1    GL732575    EFX75453.1    AE014134    AY069259    AM294249    AM294251    AM294252    AM294253    AM294254    AM294255    AM294257    AM294258    AM294259    FM245318    FM245319    FM245320    FM245321    FM245322    FM245323    FM245324    FM245325    FM245327    FM245328    FM245329    AAF53948.2    AAL39404.1    AGB93187.1    CAL26153.1    CAL26155.1    CAL26156.1    CAL26157.1    CAL26158.1    CAL26159.1    CAL26161.1    CAL26162.1    CAL26163.1    CAR93244.1    CAR93245.1    CAR93246.1    CAR93247.1    CAR93248.1    CAR93249.1    CAR93250.1    CAR93251.1    CAR93253.1    CAR93254.1    CAR93255.1    AM294248    CAL26152.1    CH480833    EDW46409.1    GDRN01086224    JAI61210.1    FM245326    CAR93252.1    AM294256    CAL26160.1    AM294250    CAL26154.1    CM000158    EDW89982.1    KQ971361    EFA09169.1    CP012523    ALC39121.1    ATLV01012268    KE524777    KFB36325.1    KA644494    AFP59123.1    ALC39116.1    QCYY01003432    ROT63494.1    GFDF01003080    JAV11004.1    ACPB03028724    GAHY01002000    JAA75510.1    GDKW01002770    JAI53825.1    KK855916    PTY24353.1    BT077551    BT121111    HACA01012232    ACO11975.1    ADD38041.1    CDW29593.1    GBGD01002713    JAC86176.1    GFDG01001304    JAV17495.1    AAAB01008964    EAA12428.4    APCN01000792    JRES01000501    KNC30634.1    GECL01000846    JAP05278.1    GGFK01010784    MBW44105.1    ADMH02000239    ETN67281.1    GGFJ01008800    MBW57941.1    GDIP01151850    LRGB01000024    JAJ71552.1    KZS21473.1    GDIP01223248    JAJ00154.1    GDIQ01005607    JAN89130.1    GGFJ01008798    MBW57939.1    GBXI01010190    JAD04102.1    AK417718    BAN20933.1    CH478232    EAT33479.1    GACK01005863    JAA59171.1    KQ982335    KYQ57522.1    BT082864    ACQ58571.1    GEDV01007665    JAP80892.1    GCES01071839    JAR14484.1    GECZ01006132    JAS63637.1    GL435038    EFN74121.1    RQTK01000768    RUS75135.1    AHAT01009501    JXUM01105626    JXUM01105627    JXUM01105628    JXUM01105629    KQ564982    KXJ71475.1    KQ976419    KYM89297.1    GDHF01014737    JAI37577.1    ADTU01023371    DS231939    EDS27932.1    GANO01002917    JAB56954.1    GFAC01000471    JAT98717.1   

Proteomes

UP000053268    UP000218220    UP000053240    UP000037510    UP000007151    UP000092462    + More
UP000235965    UP000019118    UP000075886    UP000007798    UP000007801    UP000001070    UP000008711    UP000192221    UP000009192    UP000001819    UP000008744    UP000075880    UP000030742    UP000075884    UP000008792    UP000000304    UP000268350    UP000000305    UP000000803    UP000001292    UP000075881    UP000002282    UP000007266    UP000075900    UP000075885    UP000092553    UP000030765    UP000095301    UP000283509    UP000076407    UP000076408    UP000015103    UP000075920    UP000095300    UP000075903    UP000007062    UP000075840    UP000037069    UP000075882    UP000000673    UP000076858    UP000008820    UP000075809    UP000092445    UP000000311    UP000271974    UP000018468    UP000069940    UP000249989    UP000078540    UP000069272    UP000078200    UP000005205    UP000002320    UP000007646    UP000248484   

PRIDE

Q5TLD2    Q8SXG3    Q9VIH1    A0ANL0    A0ANL8    A0ANL2    + More

Pfam

PF01336   tRNA_anti-codon        + More
PF08784   RPA_C
PF16531   SAS-6_N
PF01545   Cation_efflux
PF00755   Carn_acyltransf
PF16100   RMI2

Interpro

IPR014646   Rfa2/RPA32        + More
IPR014892   RPA_C       
IPR012340   NA-bd_OB-fold       
IPR004365   NA-bd_OB_tRNA       
IPR036390   WH_DNA-bd_sf       
IPR036388   WH-like_DNA-bd_sf       
IPR040260   RFA2-like       
IPR032396   SAS-6_N       
IPR038558   SAS-6_N_sf       
IPR027469   Cation_efflux_TMD_sf       
IPR036837   Cation_efflux_CTD_sf       
IPR002524   Cation_efflux       
IPR042231   Cho/carn_acyl_trans_2       
IPR042232   Cho/carn_acyl_trans_1       
IPR039551   Cho/carn_acyl_trans       
IPR000542   Carn_acyl_trans       
IPR032245   RMI2       

SUPFAM

SSF46785   SSF46785        + More
SSF50249   SSF50249       
SSF161111   SSF161111       
SSF160240   SSF160240       

Gene 3D

1.10.10.10     2.170.210.20     1.20.1510.10     3.30.559.40     3.30.559.70    

ProteinModelPortal

Q5TLD2   A0A1E1WUJ6   A0A194PM92   A0A2A4K049   A0A2H1WZS3   A0A194QTV0   + More
A0A0L7KQI2   A0A212FBU8   A0A1B0D3E9   A0A2J7REB5   N6TD17   J3JWX4   A0A1Y1MGG5   A0A182Q4Y9   B4MZU3   A0A0K8TSG2   B3MU71   B4JR57   B3NKW3   A0A0T6B760   A0A1W4UI71   B4KIC1   Q29LY7   B4G711   A0A182IPM5   U4UI09   A0A182NTV0   B4LQB3   A0ANM2   A0A3B0K0U6   Q8SXG3   E9GYP5   Q9VIH1   A0ANL0   B4IFI7   A0A0P4VYW3   C0MJ04   A0A182K5U0   A0ANL8   A0ANL2   B4P713   D6WX21   A0A182RMA2   A0A182P8L6   A0A0M4E519   A0A084VED1   T1P7P1   A0A0M4E1B0   A0A3R7LUP6   A0A1L8DX65   A0A182XLA8   A0A182Y3B8   R4G3R1   A0A182W6K4   A0A0P4VM52   A0A1I8NMN2   A0A2R7WXT6   C1BSH2   A0A069DR40   A0A1L8EFU7   A0A182VGI2   Q7PNC3   A0A182ICB5   A0A0L0CGK2   A0A182LD04   A0A0V0GBC5   A0A2M4ATH1   W5JT14   A0A2M4BYE1   A0A0P5F3S8   A0A0P4YSC0   A0A0P6JWM7   A0A2M4BY04   A0A0A1WZ20   R4WDH8   Q16GV5   L7M4D1   A0A151XAW1   C3KIU9   A0A1B0AGK2   A0A131YQS7   A0A146VAQ3   A0A1B6GMJ7   E1ZXE4   A0A3S1B3D3   W5M5H7   A0A182H2M4   A0A195BSP0   A0A0K8VFF1   A0A182F2K0   A0A1A9VYB6   A0A158NQK9   B0WHR5   U5EWK3   G3TD48   A0A1E1XHC3   A0A2Y9FFI2  

PDB

2Z6K     E-value=2.30941e-20,     Score=241

KEGG

692485    K10739 replication factor A2 | (RefSeq) Rpa2, BmRPA2; replication protein A2

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
03430    Mismatch repair - Bombyx mori (domestic silkworm)
03440    Homologous recombination - Bombyx mori (domestic silkworm)
03460    Fanconi anemia pathway - Bombyx mori (domestic silkworm)

GO

GO:0005634   GO:0003677   GO:0006260   GO:0006281   GO:0006310   GO:0003676   GO:0016021   GO:0008324   GO:0005662   GO:0006289   GO:0000724   GO:0035861   GO:0003697   GO:0000781   GO:0016746   GO:0034502   GO:0031625   GO:0000785   GO:0006298   GO:0016605   GO:0098505   GO:0031571   GO:0000723   GO:0010569   GO:0019903   GO:2000001   GO:0003684   GO:0006284   GO:0006418   GO:0009058   GO:0016742   GO:0003824  

PANTHER

PTHR13989   PTHR22589  

Length:

259

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.30592

Exp number, first 60 AAs:

0.0308

Total prob of N-in:

0.02197

outside

1  -  259

 

 

Pi

286.730286

Theta

214.367717

Tajima's D

0.692795

CLR

0

CSRT

0.569971501424929

Interpretation

Uncertain