SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04468
Pre Gene Modal
BGIBMGA005373
Annotation
PREDICTED:_leucine-rich_repeat-containing_protein_1_[Bombyx_mori]
Location
Bomo_Chr8(-):7140697-7143624      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.541
 

Sequence

CDS
ATGCCTTTCGATTTCTTATGTTGTGTGAGACCAGGAGCCGAAGATGTAATAGACTTAGATTACTCACATCAATCATTGGTAGATTTTCCTACAGAAGTGTTCGTATACGAAAGAACTCTGGAGACTCTGTATTGTCAAAGCAATCGTATAACAGAACTACCTCGCCAGTTGTTCATGTGCCATGGATTAAAGTTTCTCGATGTGAGCGACAATGAAGTGTCTGCGATACCAGCAGCAATTTCATCTTTAGTAAATCTACAACACCTCAATATTAGCAGAAACACTTTAACCTCAATACCAGAAACTATGAAAGCACTTAAATACTTATTATTTTTGGACCTCAGTGTGAATCCACTTGAAAAACTTCCAGATGCTATTACAAACTTGATTGCATTGCAGGAACTATATTTGAATGACACATACCTTGAGTATTTACCTGGAAATTTTGGAAGACTTGCAAATTTACGTATATTAGAATTAAGAGACAACTATTTAATGATATTACCGAAATCACTGTCTCGATCAACAGAACTGCTGAGACTTGATATTGGCCAAAATGATTTTCAACAATTCCCTGAAGTAATTGGCAGATTCTTGAAGTTGAAAGAATTATGGATTGATAGTAACAGCTTAACATGTATCCCAGCAGTAATAAAGCCTTTAGAAAATCTGATACACTTGGAAGCTACTAATAATATGATTGAAGAACTTGCTCCGGAAATTGGTTGTTGCAAACAATTGCAAGATCTGACATTAACACTTAATCATCTGACACAGCTACCAGACAGTATTGGTCAGTTAAGTAGTTTGACTACGTTGAAGCTAGATAATAATAGATTATATTCCATCCCAGAGAGTATAGGACAATTGTCAAATCTTGAAGAATTAATGCTAATGTGTAATTATTTGGACAAAATACCATCATCTATTGGTCTTCTTCGTAAACTTCAATACCTCAATCTTGATGATAATATGCTGAGATTAATACCCCCAGAAATTGGTAGTTGTAATAAGTTATCTGTTTTATCACTCAGAGGCAATAAATTGAACAAGATACCTCCAGAAATTGGTCATTTGACTTCTTTAAGAGTTTTGAATTTAGTGAGGAACTCCCTCACATGTCTTCCTCAGTCATTATTAAATTGTGATAATTTGGTGGCTCTTTGGCTCTCTGAAAATCAAAATAAACCCTTAGTGCCTATGCATTCTGAAGTAGATCCTCGCACATATGAACAAGTGCTGACTTGTTTTCTTTTCCCTCAAGTGCCTTTAGCTCCTATTGAAATCAAATCAGATAATGGGAAATCAGAAAATGTTGATAATAATACTTCAGTTCGCCACATTAGCTTTGAAGACATGAAAGCAGCACCAAAAGTGCCTGAAAAACCGGGGCAGCTAAGAAGAGCACCAACACCATATCCAAAAGAATTGAGAGCTTTGGCAAAACATGCTAGAAACATACATAAAGATGGCTCCCAAGATGTATCCCCTTCAATGCAAGATGCAGTATATATTAAAGCAGCCAAAATTACACCTACTCTACAACAAAGATTTGCATCTGATAATAAAATAGAACAAGAGTCAAGCAAAGATCACACTGATGGAATAAACAATGAAGCTATGAAAACATCAGTTTATGATAACCTTTCCTCTGAAAACACATATGATAAGCCACTAGATCTTGCACATGAACAAGGCACCACATACAAAAGTGTAGATCATGCTTTATATCCTGAAAATAATGAAACCAGTCAAAGCAAATATAAAAATGAAAGTTCAGAGACTTATGATTTAACACAGACGCAGTATTGTAAACAGCATGGTGATAAATATTCTGCAAGGCAAGAAATTGATAGATCACACGCACCAACACCGCAGAATGTTTATAGTGGAAAGATCATATATGTCACCCTGTTCATGATCATGGTTTTCATGAAAATGTTTATCAAACAGAAGGTCATACGCACACCAAAGATAAATCATATAATACAAGAAATTATGATACTTACAGCTATCATTCACACAGTAGCCGAGATCTACCAAGTCCTAGAGTACATACTCAATAATTATCCAAATGCAGTAGATAGACATGCATACCAGCCACCTATGCATCAGACACCAACTCCAAATGCAAATATTTATATACCAGTTGGTAGTCCAACTTATGTAGCATCACAATCACCTGAACTTTATTCACCCACAGGCCATACAAACGAAACAAATCCGTACCGCATGACTAACACTCCACTTGTATCTGATGATGGTAGCTACAGCCAAATCCATGCTACTTCTAGTCAAAATATGTATGAAATATATGATGCCATGCCAGCTCCTAATCCACCTAACGTGATAGGACACAGACAGAGTCCCAGTAATATATCGGAGACGATGTATAGCAGGCAGCCACCTCCATATCATATTGCAGCACCATTCACAAAACATGCCCAGTACTTTAATGGTACAGGTGGATAG
Protein
MPFDFLCCVRPGAEDVIDLDYSHQSLVDFPTEVFVYERTLETLYCQSNRITELPRQLFMCHGLKFLDVSDNEVSAIPAAISSLVNLQHLNISRNTLTSIPETMKALKYLLFLDLSVNPLEKLPDAITNLIALQELYLNDTYLEYLPGNFGRLANLRILELRDNYLMILPKSLSRSTELLRLDIGQNDFQQFPEVIGRFLKLKELWIDSNSLTCIPAVIKPLENLIHLEATNNMIEELAPEIGCCKQLQDLTLTLNHLTQLPDSIGQLSSLTTLKLDNNRLYSIPESIGQLSNLEELMLMCNYLDKIPSSIGLLRKLQYLNLDDNMLRLIPPEIGSCNKLSVLSLRGNKLNKIPPEIGHLTSLRVLNLVRNSLTCLPQSLLNCDNLVALWLSENQNKPLVPMHSEVDPRTYEQVLTCFLFPQVPLAPIEIKSDNGKSENVDNNTSVRHISFEDMKAAPKVPEKPGQLRRAPTPYPKELRALAKHARNIHKDGSQDVSPSMQDAVYIKAAKITPTLQQRFASDNKIEQESSKDHTDGINNEAMKTSVYDNLSSENTYDKPLDLAHEQGTTYKSVDHALYPENNETSQSKYKNESSETYDLTQTQYCKQHGDKYSARQEIDRSHAPTPQNVYSGKIIYVTLFMIMVFMKMFIKQKVIRTPKINHIIQEIMILTAIIHTVAEIYQVLEYILNNYPNAVDRHAYQPPMHQTPTPNANIYIPVGSPTYVASQSPELYSPTGHTNETNPYRMTNTPLVSDDGSYSQIHATSSQNMYEIYDAMPAPNPPNVIGHRQSPSNISETMYSRQPPPYHIAAPFTKHAQYFNGTGG

Summary

Uniprot
H9J781   A0A2H1WZN8   A0A2A4K071   A0A194QXX3   A0A0L7LQF6   A0A212FEQ8   + More
A0A088A1T9   A0A2A3ELM4   A0A0L7QU59   A0A154P4Y6   A0A067R0Z9   A0A3S3P2S5   B4P7S0   B3NQQ0   A0A0J9RCU2  
Pubmed
19121390    26354079    26227816    22118469    24845553    17994087    + More
17550304    22936249   
EMBL
BABH01013671    BABH01013672    BABH01013673    ODYU01012305    SOQ58549.1    NWSH01000327    + More
PCG77416.1    KQ461154    KPJ08426.1    JTDY01000316    KOB77728.1    AGBW02008899    OWR52236.1    KZ288215    PBC32703.1    KQ414735    KOC62155.1    KQ434819    KZC06912.1    KK852791    KDR16469.1    NCKU01003851    RWS06831.1    CM000158    EDW91096.1    CH954179    EDV55960.1    CM002911    KMY93877.1    KMY93878.1   
Proteomes
UP000005204    UP000218220    UP000053240    UP000037510    UP000007151    UP000005203    + More
UP000242457    UP000053825    UP000076502    UP000027135    UP000285301    UP000002282    UP000008711   
PRIDE
H9J781   
Pfam
PF13906   AA_permease_C        + More
PF13520   AA_permease_2
PF13855   LRR_8
PF13306   LRR_5
PF00595   PDZ
Interpro
IPR032675   LRR_dom_sf        + More
IPR029485   CAT_C       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR002293   AA/rel_permease1       
IPR026906   LRR_5       
IPR036034   PDZ_sf       
IPR001478   PDZ       
SUPFAM
SSF50156   SSF50156       
Gene 3D
3.80.10.10    
ProteinModelPortal
H9J781   A0A2H1WZN8   A0A2A4K071   A0A194QXX3   A0A0L7LQF6   A0A212FEQ8   + More
A0A088A1T9   A0A2A3ELM4   A0A0L7QU59   A0A154P4Y6   A0A067R0Z9   A0A3S3P2S5   B4P7S0   B3NQQ0   A0A0J9RCU2  
PDB
4U08     E-value=1.37705e-43,     Score=447

Ontologies

KEGG
101745542    K12796 erbb2-interacting protein | (RefSeq) leucine-rich repeat-containing protein 1
GO
GO:0016021   GO:0022857   GO:0005515   GO:0016020   GO:0006281   GO:0008270   GO:0004812   GO:0006418   GO:0009058   GO:0016742   GO:0003824  

Topology

Length:
823
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
17.11275
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00119
outside
1  -  823
 
 

Population Genetic Test Statistics

Pi
19.632371
Theta
233.583891
Tajima's D
0.349583
CLR
0.272138
CSRT
0.466576671166442
Interpretation
Uncertain
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