Gene

KWMTBOMO04460

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr8(-):7051018-7052394      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.373 Nuclear   Reliability : 1.556

CDS

ATGGCGTATATAAGTAGAATAAAGCCCCTATCCGTAACGATAGGATTTTTTAACGCTTACGGTCTCGCAAATCAACGTGATCAGGTTTCTGACTTTTTGCGTGACCATCAAATTGACATCTTTTTGGTGCAGGAGACCCTGCTTAAGCCCGCGCGCCGCGACCCTAAAATCGCGAACTATAACATGGTTAGGAACGACAGGCTCACTGCTCGTGGTGGTGGTACCGTCATTTACTATAGACGAGCCCTGCACTGCGTCCCACTCGACCCCCCCGCGCTTTCTAACATCGAAGCATCAGTATGCCGAATCTCACTGACTGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGAAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACACCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGAGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCAGTCGTTATGAAGCTCGGTCGCGCTCCCGACTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCAACATTAGATAGATCATCGAAACAAGTTGTAGCGGAGGATTTCCTTCACCGCTTCAAATTGTCCGATGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTGAAATCGGATACGGTAGCAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTTGATGATGACGAAAAAGCAGAGTTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCTTCTTTATTCTTTATTTTTTGTACACACTGTTAATATAATACAGTAA

Protein

MAYISRIKPLSVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMVRNDRLTARGGGTVIYYRRALHCVPLDPPALSNIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLSLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVATMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVLLYSLFFVHTVNIIQ

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Similarity

Belongs to the histone H2A family.

Uniprot

Q93137   Q9BPQ0   Q9XXW0   O96546   A0A0N1PFV1   A0A1Y1NA23   + More
A0A139W8G9   X1WNI2   A0A2S2QV22   A0A2S2P6H1   A0A2S2NJB5   A0A023EYS8   V5GNJ2   A0A139WA11   X1WQI9   A0A087U3K8   X1WK15   A0A1B6MLS9   X1X0M4   A0A087THU2   J9LFC9   A0A2S2QQB9   A0A2S2PJ52   A0A2S2PPK8   A0A1B6MIM7   A0A224X6Q4   A0A224XB44   A0A1Y1K0C8   J9LPH9   J9LVT4   A0A087UGF5   A0A2S2QEE0   U4UGQ8   A0A087T3W0   A0A2J7PBY3   A0A2J7QY69   J9LHE0   A0A0J7K0R9   A0A2J7QR37   K7IN67   J9LC21   A0A224X6W2   A0A0L7L9V8   A0A0L7K4J3   A0A2J7RQ60   A0A2J7PU96   A0A2J7Q6J2   A0A224X6S1   A0A2J7RE85   A0A2S2PXP7   A0A182FPZ5   T1ID59   A0A2J7R7D0   A0A2J7RB85   J9MAC6   A0A2S2N6Q7   A0A0V0G5B6   A0A2S2PXP8   X1WZH0   J9LR29   J9MAR0   A0A2S2PEZ9   A0A1B0DGV7   A0A2S2Q383   A0A087UI90   A0A224X6T4   A0A069DZL8   A0A2M4AQK3   Q24335   T1ICH1   A0A224XJI0   J9LNE5   A0A2S2PJG2   V5GNF3   A0A2J7QB68   A0A2A4IUM2   X1WLB2   A0A2S2R2E8   A0A224X746   A0A0J7K3N0   A0A0L7KVB3   A0A0L7L3F7   T1I054   J9KPF1   A0A224XHW8   A0A0A9XZ61   A0A2J7PP17   X1X033  

Pubmed

10333566    10380107    26354079    28004739    18362917    19820115    + More
25474469    23537049    20075255    26227816    26334808    2441397    25401762   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
AF081103    AAC72921.1    KQ459265    KPJ02064.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    ABLF02008153    ABLF02008462    ABLF02008464    GGMS01012398    MBY81601.1    GGMR01012189    MBY24808.1    GGMR01004661    MBY17280.1    GBBI01004395    JAC14317.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    ABLF02022418    KK118005    KFM71947.1    ABLF02012584    ABLF02013765    ABLF02024884    GEBQ01003077    JAT36900.1    ABLF02065839    KK115285    KFM64681.1    ABLF02023911    GGMS01010725    MBY79928.1    GGMR01016297    MBY28916.1    GGMR01018716    MBY31335.1    GEBQ01004157    JAT35820.1    GFTR01008279    JAW08147.1    GFTR01008262    JAW08164.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02009591    ABLF02009592    ABLF02009594    ABLF02066703    ABLF02003241    ABLF02003242    ABLF02025904    KK119692    KFM76444.1    GGMS01006359    MBY75562.1    KB632143    ERL89075.1    KK113281    KFM59799.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    ABLF02014934    ABLF02014939    ABLF02017810    LBMM01018021    KMQ83899.1    NEVH01011985    PNF31054.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GFTR01008260    JAW08166.1    JTDY01002082    KOB72150.1    JTDY01011738    KOB53653.1    NEVH01001347    PNF42966.1    NEVH01021205    PNF19912.1    NEVH01017470    PNF24199.1    GFTR01008271    JAW08155.1    NEVH01005277    PNF39135.1    GGMS01000479    MBY69682.1    ACPB03027378    NEVH01006736    PNF36716.1    NEVH01005923    PNF38085.1    ABLF02007779    ABLF02007782    ABLF02050375    GGMR01000226    MBY12845.1    GECL01003538    JAP02586.1    GGMS01001094    MBY70297.1    ABLF02034467    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02037715    GGMR01015412    MBY28031.1    AJVK01033868    GGMS01002992    MBY72195.1    KK119923    KFM77079.1    GFTR01008261    JAW08165.1    GBGD01000415    JAC88474.1    GGFK01009732    MBW43053.1    M17214    AAA28508.1    ACPB03022356    GFTR01008257    JAW08169.1    ABLF02001804    ABLF02035179    ABLF02062794    GGMR01016905    MBY29524.1    GALX01005359    JAB63107.1    NEVH01016302    PNF25823.1    NWSH01007753    PCG62823.1    ABLF02042518    ABLF02057746    GGMS01014910    MBY84113.1    GFTR01008151    JAW08275.1    LBMM01015125    KMQ84919.1    JTDY01005246    KOB67202.1    JTDY01003188    KOB69997.1    ACPB03000870    ABLF02041767    GFTR01008254    JAW08172.1    GBHO01019476    GBHO01012642    GBHO01012640    JAG24128.1    JAG30962.1    JAG30964.1    NEVH01023280    PNF18085.1    ABLF02066437   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000030742    UP000235965    + More
UP000036403    UP000002358    UP000037510    UP000069272    UP000015103    UP000092462    UP000218220   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q24335   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF14291   DUF4371
PF05699   Dimer_Tnp_hAT
PF03372   Exo_endo_phos
PF16211   Histone_H2A_C
PF00125   Histone

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR025398   DUF4371       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR006580   Znf_TTF       
IPR020847   AP_endonuclease_F1_BS       
IPR032458   Histone_H2A_CS       
IPR002119   Histone_H2A       
IPR032454   Histone_H2A_C       
IPR007125   Histone_H2A/H2B/H3       
IPR009072   Histone-fold       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       
SSF47113   SSF47113       

Gene 3D

3.60.10.10     1.10.20.10    

CDD

cd00074  H2A

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   O96546   A0A0N1PFV1   A0A1Y1NA23   + More
A0A139W8G9   X1WNI2   A0A2S2QV22   A0A2S2P6H1   A0A2S2NJB5   A0A023EYS8   V5GNJ2   A0A139WA11   X1WQI9   A0A087U3K8   X1WK15   A0A1B6MLS9   X1X0M4   A0A087THU2   J9LFC9   A0A2S2QQB9   A0A2S2PJ52   A0A2S2PPK8   A0A1B6MIM7   A0A224X6Q4   A0A224XB44   A0A1Y1K0C8   J9LPH9   J9LVT4   A0A087UGF5   A0A2S2QEE0   U4UGQ8   A0A087T3W0   A0A2J7PBY3   A0A2J7QY69   J9LHE0   A0A0J7K0R9   A0A2J7QR37   K7IN67   J9LC21   A0A224X6W2   A0A0L7L9V8   A0A0L7K4J3   A0A2J7RQ60   A0A2J7PU96   A0A2J7Q6J2   A0A224X6S1   A0A2J7RE85   A0A2S2PXP7   A0A182FPZ5   T1ID59   A0A2J7R7D0   A0A2J7RB85   J9MAC6   A0A2S2N6Q7   A0A0V0G5B6   A0A2S2PXP8   X1WZH0   J9LR29   J9MAR0   A0A2S2PEZ9   A0A1B0DGV7   A0A2S2Q383   A0A087UI90   A0A224X6T4   A0A069DZL8   A0A2M4AQK3   Q24335   T1ICH1   A0A224XJI0   J9LNE5   A0A2S2PJG2   V5GNF3   A0A2J7QB68   A0A2A4IUM2   X1WLB2   A0A2S2R2E8   A0A224X746   A0A0J7K3N0   A0A0L7KVB3   A0A0L7L3F7   T1I054   J9KPF1   A0A224XHW8   A0A0A9XZ61   A0A2J7PP17   X1X033  

KEGG

NA   

GO

GO:0003964   GO:0004519   GO:0046983   GO:0016021   GO:0006281   GO:0003677   GO:0046982   GO:0000786   GO:0005634  

Subcellular location

Chromosome  
Nucleus  

Length:

437

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.16075

Exp number, first 60 AAs:

0.12339

Total prob of N-in:

0.01193

outside

1  -  437

 

 

Pi

2.557035

Theta

3.647549

Tajima's D

-0.97626

CLR

852.011488

CSRT

0.138693065346733

Interpretation

Uncertain