Gene

KWMTBOMO04456

Pre Gene Modal

BGIBMGA005377

Annotation

PREDICTED:_general_transcription_factor_IIH_subunit_2_[Papilio_polytes]

Location

Bomo_Chr8(-):6996053-7002274      View in EpiBrowser

Full name

General transcription factor IIH subunit      

Location in the cell

Nuclear   Reliability : 2.67

CDS

ATGGCTGATGAAGATGACCCTAAAGAGTATCGATGGGAAACTGGTTATGAAAAAACTTGGGAGGCTATTAAAGAAGATGAAGATGGGTTGGTTGAAAGCCTGGTGGCTGAATTTGCCCAGAAAGCAGCACGTAAAGCAGCTGCTCCTCGTAAAGGTCCAGTCAGACTTGGCATGATGAGGCATTTACTTTTAGCCATAGATTGTTCTGAGGCTATGAGCTCCCAAGATTTGAAACCTTCACGGTTTCTGTGCACATTGAAGTTGCTCGAGAAATTTGTTGAAGAGTTTTTTGACCAGAATCCTCTCAGTCAGCTTGGTTTAATAGCAATGAAGAATAAGAGAGCTGAGAAAATAACTGACCTATCTGGAAATGTCCGGAAACACATTAAAGCCATACAAGGTTTATCCAACACTCCGCTGACTGGAGAGCCATCATTACAAAATACGCTAGAGCTGGCTGGGCGAATCCTAAGGCCTCTGCCTGGACACGCGTCAAGAGAATTACTAGTGCTTTTCGCATCCCTTACAACTTGCGATCCAAGTGATATAAACACTACCATAGAAACACTAAAAACAGATGGAATTAGATGTTCTGTTATTGGTCTAGCTGCTGAAGTGCGGATTTGCAAAAAAATGTGTCAAGACACTAATGGAGATTATGGTGTGGTATTAGACGATTGTCACTACCAGTCACTGCTACTAGAGTACACGTCGCCGCCGCCCCGCGCCCGCTCGTTGGACGCGGGCCTGGTGAAGATGGGCTTCCCGCATTCAACGCCGCTCGAGGAACAAGCCGACCCAGGGGCTAATGTCGATCCACCTATTACTGTTTGTATGTGTCATTTGGAGGAAGGCGAAGGTATAGGCGGCGAGGGTCACCTGTGTCCGCAGTGCCGCTCCAAGTATTGTTCGTTGCCAGCTCAGTGTCGCACCTGCGGCCTGACACTCGCATCAGCACCACATCTTGCAAGATCATACCATCACCTGTTTCCAGTGGAACCTTATGAAGAATTAGATAATGATGGCCAGGCGCAGTATTGTTTTGGATGCTTAAGAACCTTCACCGATATAGACAAGAAGATACATCGTTGTCCCCGATGTAAAGAGTACTACTGCTGGGAGTGCGAGGGCGCGGTGACGGCCACGCTGCACGTGTGTCCTGGCTGCGCCACCAGACCTCATTTGTACCAGCGGCTACCAAGCACGACCTCATCGTAA

Protein

MADEDDPKEYRWETGYEKTWEAIKEDEDGLVESLVAEFAQKAARKAAAPRKGPVRLGMMRHLLLAIDCSEAMSSQDLKPSRFLCTLKLLEKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTLELAGRILRPLPGHASRELLVLFASLTTCDPSDINTTIETLKTDGIRCSVIGLAAEVRICKKMCQDTNGDYGVVLDDCHYQSLLLEYTSPPPRARSLDAGLVKMGFPHSTPLEEQADPGANVDPPITVCMCHLEEGEGIGGEGHLCPQCRSKYCSLPAQCRTCGLTLASAPHLARSYHHLFPVEPYEELDNDGQAQYCFGCLRTFTDIDKKIHRCPRCKEYYCWECEGAVTATLHVCPGCATRPHLYQRLPSTTSS

Similarity

Belongs to the GTF2H2 family.

Uniprot

A0A3S2NSH6   A0A2A4IYI8   A0A2H1VSI9   A0A194PMD0   H9J785   A0A194RD67   + More
J3JTY9   A0A1Y1JS06   A0A336K9I8   B0WAT8   E2BY41   Q173R5   E2AW32   A0A026X2R0   A0A0L0CRY2   A0A2Z5TZB9   W8BSK5   A0A034WQM8   A0A1B0GNR2   A0A151WSC4   A0A1Q3F8S0   A0A1I8N6I9   A0A1I8QC55   A0A0A1XQC2   A0A1B0CJR7   A0A2J7R784   A0A151HY85   A0A0M9ABU6   W5JI03   A0A0K8VN72   A0A154NYT3   A0A0L7QXI3   A0A2J7R758   A0A182FUK7   A0A067RH91   A0A182KCD8   A0A0M4EH85   A0A2A3ET46   A0A182QQ13   A0A088A575   A0A151I792   K7IVF9   A0A182X1V8   A0A182V099   A0A182LQ16   Q7PPS5   A0A182HFS2   F4X4X4   A0A182P8I0   A0A182MYD0   A0A182IQB4   A0A182UAR1   A0A182VTB1   A0A1A9XBJ9   A0A182MLR7   A0A310SHB4   A0A182YSS7   B4KYL1   A0A182RLQ3   B4J3S1   B4LDP4   A0A0A9YGM3   B4GRB7   Q2M0P7   A0A0J7KN82   A0A3B0K247   T1JJK0   B3MBA0   A0A1B6DUF4   A0A1J1HS22   B4N3K4   A0A084VKX6   A0A1A9WS76   A0A0P5W7H0   E9GFE0   B4PIR4   A0A0N8E1E5   A0A1W4UE88   B4QLB8   Q9VNP8   A0A0P5B7H2   A0A210PXN6   V4B2E9   B4IB56   B3NEG9   A0A1A9UXV1   A0A1B0BAD5   A0A1A9Z3L9   D3TRH4   K1RAW7   A0A158NVZ4   A0A023F313   A0A0P5VYR5   A0A0P6I4D1   A0A0P4ZW49   A0A2P6LCB3   E0VFY0   A0A087TNQ8  

Pubmed

26354079    19121390    22516182    23537049    28004739    20798317    + More
17510324    24508170    30249741    26108605    26760975    24495485    25348373    25315136    25830018    20920257    23761445    24845553    20075255    20966253    12364791    14747013    17210077    21719571    25244985    17994087    25401762    15632085    23185243    24438588    21292972    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28812685    23254933    20353571    22992520    21347285    25474469    20566863   

EMBL

RSAL01000258    RVE43372.1    NWSH01005050    PCG64478.1    ODYU01003876    SOQ43184.1    + More
KQ459599    KPI94477.1    BABH01013657    KQ460397    KPJ15220.1    APGK01057992    APGK01057993    APGK01057994    APGK01057995    BT126699    KB741285    KB632425    AEE61661.1    ENN70742.1    ERL95353.1    GEZM01102799    JAV51783.1    UFQS01000195    UFQT01000195    SSX01097.1    SSX21477.1    DS231875    EDS41804.1    GL451420    EFN79320.1    CH477418    EAT41272.1    GL443213    EFN62454.1    KK107020    QOIP01000006    EZA62580.1    RLU21850.1    JRES01000005    KNC34981.1    FX985775    BBA93662.1    GAMC01004438    JAC02118.1    GAKP01002457    JAC56495.1    AJVK01013549    KQ982782    KYQ50728.1    GFDL01011157    JAV23888.1    GBXI01001559    JAD12733.1    AJWK01014895    NEVH01006738    PNF36666.1    KQ976730    KYM76404.1    KQ435687    KOX81345.1    ADMH02001479    ETN62399.1    GDHF01011988    JAI40326.1    KQ434783    KZC04783.1    KQ414705    KOC63249.1    PNF36669.1    KK852470    KDR23206.1    CP012525    ALC43038.1    KZ288191    PBC34472.1    AXCN02002052    KQ978426    KYM94032.1    AAAB01008933    EAA09916.5    APCN01005568    GL888679    EGI58547.1    AXCM01003009    KQ759893    OAD62067.1    CH933809    EDW18822.1    CH916366    EDV97302.1    CH940647    EDW70005.1    GBHO01014964    GBRD01001178    JAG28640.1    JAG64643.1    CH479188    EDW40302.1    CH379069    EAL30883.2    LBMM01005164    KMQ91772.1    OUUW01000012    SPP87393.1    JH432085    CH902618    EDV41401.1    GEDC01008029    JAS29269.1    CVRI01000011    CRK89278.1    CH964095    EDW79209.2    ATLV01014310    KE524956    KFB38620.1    GDIP01090354    JAM13361.1    GL732542    EFX81828.1    CM000159    EDW95572.1    GDIQ01071308    JAN23429.1    CM000363    CM002912    EDX11536.1    KMZ01251.1    AE014296    AY047574    AAF51879.2    AAK77306.1    GDIP01188387    JAJ35015.1    NEDP02005415    OWF41247.1    KB203855    ESO82529.1    CH480826    EDW44519.1    CH954178    EDV52804.1    JXJN01010916    CCAG010018371    EZ424026    ADD20302.1    JH818113    EKC40804.1    ADTU01027567    GBBI01003278    JAC15434.1    GDIP01093299    LRGB01000389    JAM10416.1    KZS19422.1    GDIQ01009688    JAN85049.1    GDIP01207939    JAJ15463.1    MWRG01000400    PRD36201.1    DS235129    EEB12286.1    KK116084    KFM66747.1   

Proteomes

UP000283053    UP000218220    UP000053268    UP000005204    UP000053240    UP000019118    + More
UP000030742    UP000002320    UP000008237    UP000008820    UP000000311    UP000053097    UP000279307    UP000037069    UP000092462    UP000075809    UP000095301    UP000095300    UP000092461    UP000235965    UP000078540    UP000053105    UP000000673    UP000076502    UP000053825    UP000069272    UP000027135    UP000075881    UP000092553    UP000242457    UP000075886    UP000005203    UP000078542    UP000002358    UP000076407    UP000075903    UP000075882    UP000007062    UP000075840    UP000007755    UP000075885    UP000075884    UP000075880    UP000075902    UP000075920    UP000092443    UP000075883    UP000076408    UP000009192    UP000075900    UP000001070    UP000008792    UP000008744    UP000001819    UP000036403    UP000268350    UP000007801    UP000183832    UP000007798    UP000030765    UP000091820    UP000000305    UP000002282    UP000192221    UP000000304    UP000000803    UP000242188    UP000030746    UP000001292    UP000008711    UP000078200    UP000092460    UP000092445    UP000092444    UP000005408    UP000005205    UP000076858    UP000009046    UP000054359   

PRIDE

H9J785    Q9VNP8   

Pfam

PF04056   Ssl1        + More
PF07975   C1_4
PF13520   AA_permease_2
PF13906   AA_permease_C

Interpro

IPR007198   Ssl1-like        + More
IPR012170   TFIIH_SSL1/p44       
IPR002035   VWF_A       
IPR013083   Znf_RING/FYVE/PHD       
IPR036465   vWFA_dom_sf       
IPR004595   TFIIH_C1-like_dom       
IPR013087   Znf_C2H2_type       
IPR002219   PE/DAG-bd       
IPR002293   AA/rel_permease1       
IPR029485   CAT_C       

SUPFAM

SSF53300   SSF53300       

Gene 3D

3.30.40.10     3.40.50.410    

CDD

cd01453  vWA_transcription_factor_IIH_t

ProteinModelPortal

A0A3S2NSH6   A0A2A4IYI8   A0A2H1VSI9   A0A194PMD0   H9J785   A0A194RD67   + More
J3JTY9   A0A1Y1JS06   A0A336K9I8   B0WAT8   E2BY41   Q173R5   E2AW32   A0A026X2R0   A0A0L0CRY2   A0A2Z5TZB9   W8BSK5   A0A034WQM8   A0A1B0GNR2   A0A151WSC4   A0A1Q3F8S0   A0A1I8N6I9   A0A1I8QC55   A0A0A1XQC2   A0A1B0CJR7   A0A2J7R784   A0A151HY85   A0A0M9ABU6   W5JI03   A0A0K8VN72   A0A154NYT3   A0A0L7QXI3   A0A2J7R758   A0A182FUK7   A0A067RH91   A0A182KCD8   A0A0M4EH85   A0A2A3ET46   A0A182QQ13   A0A088A575   A0A151I792   K7IVF9   A0A182X1V8   A0A182V099   A0A182LQ16   Q7PPS5   A0A182HFS2   F4X4X4   A0A182P8I0   A0A182MYD0   A0A182IQB4   A0A182UAR1   A0A182VTB1   A0A1A9XBJ9   A0A182MLR7   A0A310SHB4   A0A182YSS7   B4KYL1   A0A182RLQ3   B4J3S1   B4LDP4   A0A0A9YGM3   B4GRB7   Q2M0P7   A0A0J7KN82   A0A3B0K247   T1JJK0   B3MBA0   A0A1B6DUF4   A0A1J1HS22   B4N3K4   A0A084VKX6   A0A1A9WS76   A0A0P5W7H0   E9GFE0   B4PIR4   A0A0N8E1E5   A0A1W4UE88   B4QLB8   Q9VNP8   A0A0P5B7H2   A0A210PXN6   V4B2E9   B4IB56   B3NEG9   A0A1A9UXV1   A0A1B0BAD5   A0A1A9Z3L9   D3TRH4   K1RAW7   A0A158NVZ4   A0A023F313   A0A0P5VYR5   A0A0P6I4D1   A0A0P4ZW49   A0A2P6LCB3   E0VFY0   A0A087TNQ8  

PDB

5O85     E-value=7.76501e-99,     Score=920

KEGG

101744339    K03142 transcription initiation factor TFIIH subunit 2 | (RefSeq) general transcription factor IIH s

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)

GO

GO:0006289   GO:0005675   GO:0008270   GO:0000439   GO:0006351   GO:0003676   GO:0035556   GO:0016021   GO:0006357   GO:0006366   GO:0022857   GO:0005634   GO:0001111   GO:0006367   GO:0001113   GO:0006281   GO:0004812   GO:0006418   GO:0009058   GO:0016742   GO:0003824  

Subcellular location

Nucleus  

Length:

405

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.001

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.00979

outside

1  -  405

 

 

Pi

239.257879

Theta

174.418219

Tajima's D

0.979748

CLR

0.149381

CSRT

0.655967201639918

Interpretation

Uncertain