Gene

KWMTBOMO04447

Pre Gene Modal

BGIBMGA005419

Annotation

PREDICTED:_mucin-2-like_[Amyelois_transitella]

Location

Bomo_Chr8(+):6856253-6869199      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.046

CDS

ATGATGAATTTTTTTAGTAAAGCTCCAACCGTGAAGGAAATTCAAAGGCAAAATGACCGTGATCTACGAAAGGCTGGTCGCGACCTGGAAAGAGATAAAGCTAACCTGGAAAGGGAAGAAAAGAAATTAGTAAAGTGGTGTTTCGCTGCAGAAAATTTTTTAGTACTCGAAGGCATGAAGCATTGCATCAAGCCAGAACCGGGGAAAGAAATAGCAAGCGCGGATGACGAAAAAACTAAAGCCAAATTGATCATGACCATCGACCCGTCGTTGTACTGTCCGAGTTTAGAAGCCGAAAAAAGAAAACAATCCAACGCCTTTAGTGCTATTTTCTTAAGTGGAAATTTCAACTGCGATAGTTGGTACATAGATAGCGGGGCCAGCAAACACATGACAGCAAAGAAAGAATACGTTGAGAGTCCATCATTTGAACATGAAATTAAAGAAATAATTGTTGCGAACAAAACATCCGTCCCGGTAGTGTGTTCTGGTGATGTAAACATAATCACAGTTGTGAATGGTGTAGAATATGACATCACAGTTTCAAATGTATTGTGCATACCGAGTTTAACAACAAACTTGCTTTCAGTGAGTCAGTTAATTGAGAATGGCAATAAGGTAATCTTTAAAGAGAAATTTTGCTATATTTACAATCAACAGAGAACTCTAGTTGGAAAGGCAGAATTAGTAGATGGTGTGTACAGATTATATACTAAGAAATCAGAACAGTTATTCGCAGCCACAGCTAAGGTGTCGAGTGAAACTTGGCACCGACGATTAGGGCATATCAACAGTACCAGCTTGAACAAAATGAAGAATGGAGCTACGACAGGTATTTCATACACAAATAAAGCTGATGTTGACAAATCTAAGTGTACTGTTTGCTGTAAGGGGAAGCAGTCTAGACTACCTTTTCAGCCTAGTTCAACTAACACCCAAGATATTTTAGAATTAATACACTCAGATGTGTGTGGTCCGATGGAAAATGTGTCCATTGGAGGATCCAGATACTATGTCTTATTTGTGGATGACTACAGCAGAATGGTTTTTGTATACTTCATGAAAACAAAGTCAGAGGTATTTAAGTTTTTCAAAGAATTCCAGTCACTTGTAGAAAAACAGACAGATCGGAAAATTAAAATTCTAAGAACAGACAATGGCGGTGAGTACTGCAGTCAAGACTTTGAAAGATATCTAAAACAACACGGAATAATTCACCAGAAAAGTAATGCTTACACACCACAGCAAAATGGTGTGTGTGAAAGGATGAATAGGTCACTAGTTGAAAAGGCTAGATGTCTAATTTTTGATGCTGGTTTACATAAAAAGTTTTGGGCAGAAGCCATAAATACATCTGTATACTTAAGGAATCGATCAGTTGTTACTGGATTAAACAACATGACTCCATATGAAGCCTGGACAAAGAAAAAACCTGACTTAAGTCATGTACGTATTTTTGGAAGTAAGGTTATGATGCACATACCAAAAGAAAAGCGCTTAAAATGGGATATGAAGGCTAAAGAACTTATTTTGGTAGGCTATGCAGACAATGTAAAAGGCTATAGGGTTTATAACCCAGAAAATAACTCTGTCACAACTAGCAGAGACATTATAATAATGGAGAAAACTGAAAATACAATTGAAATTCCTATTGAGTGCAAGGCTCCAGCGGAGGAACAGAGAGAAGGAGACGAAAGTAGAACTACAGAAAGTACAGACACTGAATGTGATGATAATGATATCACATATATTCCAGAAGCTTCTTCAGGAAGTGACTCATATGACAGTTTTTCTGAAACACCATCAGAACCAGAACCTTCATTATTAGAATTGAATCAGGATATTCCAAACAAGCGAGTGAGAAAAATACCTGATAGATTTAGCTATAGTCACTTATGTATTGCAGAATCAGATGATCAAAATATAATGGATATTTCACTCAAGGAAGCTTTAAATGGACCTGAAAGTAAATTTTGGAGATCAAGCATGGAGGAGGAATTAGAATCATTTAAGAAAAATGATGCATGGGAACTTGTGGATAAGCCTCGTGACTCTACAGTAGTGCAGTGCAAATGGGTATTTAAAAAGAAGTATGATAGTGTCGGTAATGTGCGTTATCGTGCTAGATTAGTGGCAAAAGGCTTTTCACAGAAAGCTGGCATAGACTATCATGAAACTTTTTCACCTGTGCTACGTTATACTACTTTAAGATTGTTATTTTCTATAGCAGTAAAACTAGGTTTAGATATACGTCATCTTGATGTCACTACAGCCTTTCTAAATGGTTTTTTGAATGAATCTGTGTATATGCAAAAACCTGTCCTTTATAGAGATTGTAATGATAATGATAACAAAGTATTAAAGCTTAAACGTGCCATATATGGACTTAAGCAATCATCTCGTGCTTGGTATCAGAGAGTTAATGATTACTTAGAGTCTTTAGGATATTTAAAATCTAAGTATGAACCGTGTTTGTTTACGAAGTCTGAAGGAAATGCTAAAGTTATAATAGCATTGTTTGTTGATGATTTTTTTGTTTTTTCTAACTGTAAAATGGCAACTAATCAGTTAATACAAGATTTGAGTAGTAAATTTAAAATTAAAGATTTGGGTCAAATAAAGCAATGTTTAGGCTTAAGAGTGAATATGTATAAAAATGCTATAACTGTTGATCAAGAACAGTATATAGAAAGCTTGTTAAAAAAGTTTAACATGTCACATTGTAAAACTATAGAAACTCCTATGGAGATTAACTTAAGATTGGAAAAATCTGAGAATAGTTTATGTAATAAAAATATTCCATATAGACAATTAATAGGTAACTTAATGTATTTAGCTGTGTTAACCAGACCAGACATAGCTTACAGTGAAATGGAAATAAAGAAAATGGCTAAAGAAGGTAACAATGATGGTTGCAAAATATTAGCCAAACAATTAGTTCAATTAAGAAAACAGAAAAACAGAATTTATGCTGCAAATAGCAAGATATCAAGTGTACAGATCCACAATAAAGCAATGGGTGCAAATATTGCTATTGCAGGAGCAATGGGCACTACAGCTAAAACAATGGGCAACATGAATAAGGTTATGAATCCACATCAAATTGCAAAGGATATGGAGGCATTCAAACAGGCAAATGCCAAAATGGATATGACAGATGAAATGATTTCAGACACACTAGATGATATCATGGACGAATCTGGTGATGAGGAAGAATCTGCTGGAATTGTCAACCAGGTGCTGGATGAGATCGGTATAGAAATCAGCGGGAAGATGGCAGACGCTCCTTCAGTTTCCCGGAACAAAATCGGACAATCAACTACAGACGCCGACAAAGATATAATGGCACAACTCGCTAAACTGAAATCCACATAG

Protein

MMNFFSKAPTVKEIQRQNDRDLRKAGRDLERDKANLEREEKKLVKWCFAAENFLVLEGMKHCIKPEPGKEIASADDEKTKAKLIMTIDPSLYCPSLEAEKRKQSNAFSAIFLSGNFNCDSWYIDSGASKHMTAKKEYVESPSFEHEIKEIIVANKTSVPVVCSGDVNIITVVNGVEYDITVSNVLCIPSLTTNLLSVSQLIENGNKVIFKEKFCYIYNQQRTLVGKAELVDGVYRLYTKKSEQLFAATAKVSSETWHRRLGHINSTSLNKMKNGATTGISYTNKADVDKSKCTVCCKGKQSRLPFQPSSTNTQDILELIHSDVCGPMENVSIGGSRYYVLFVDDYSRMVFVYFMKTKSEVFKFFKEFQSLVEKQTDRKIKILRTDNGGEYCSQDFERYLKQHGIIHQKSNAYTPQQNGVCERMNRSLVEKARCLIFDAGLHKKFWAEAINTSVYLRNRSVVTGLNNMTPYEAWTKKKPDLSHVRIFGSKVMMHIPKEKRLKWDMKAKELILVGYADNVKGYRVYNPENNSVTTSRDIIIMEKTENTIEIPIECKAPAEEQREGDESRTTESTDTECDDNDITYIPEASSGSDSYDSFSETPSEPEPSLLELNQDIPNKRVRKIPDRFSYSHLCIAESDDQNIMDISLKEALNGPESKFWRSSMEEELESFKKNDAWELVDKPRDSTVVQCKWVFKKKYDSVGNVRYRARLVAKGFSQKAGIDYHETFSPVLRYTTLRLLFSIAVKLGLDIRHLDVTTAFLNGFLNESVYMQKPVLYRDCNDNDNKVLKLKRAIYGLKQSSRAWYQRVNDYLESLGYLKSKYEPCLFTKSEGNAKVIIALFVDDFFVFSNCKMATNQLIQDLSSKFKIKDLGQIKQCLGLRVNMYKNAITVDQEQYIESLLKKFNMSHCKTIETPMEINLRLEKSENSLCNKNIPYRQLIGNLMYLAVLTRPDIAYSEMEIKKMAKEGNNDGCKILAKQLVQLRKQKNRIYAANSKISSVQIHNKAMGANIAIAGAMGTTAKTMGNMNKVMNPHQIAKDMEAFKQANAKMDMTDEMISDTLDDIMDESGDEEESAGIVNQVLDEIGIEISGKMADAPSVSRNKIGQSTTDADKDIMAQLAKLKST

Uniprot

A0A2A4J959   A0A0N1ICY1   A0A194RU38   A0A1Y1LYU4   A0A2J7RKJ6   A0A2J7R8S8   + More
A0A2J7R668   A0A2J7Q1Z2   A0A146LH62   A0A0A9WRE3   A0A251T6N3   A0A2J7PSB2   A0A085MVP5   A0A085N572   A0A0K8U6S2   A0A085NQR3   A0A085MSF4   A0A085N9K0   A0A0A9WPH5   A0A3S3NIE3   A0A151T469   A0A151QNH5   A0A293MM55   K7J8U2   A0A0J7K6W1   A0A151R7U0   A0A151TMN9   A0A151T355   A0A0K8WJW9   A0A0K8U6X2   A0A151TIH6   A0A0A1WFC7   A0A0V0RWJ3   A0A2N9IWX1   A0A224X581   A0A151THM1   B6REL8   A0A085MV21   A0A0V1MGJ0  

Pubmed

26354079    28004739    26823975    25401762    28538728    24929829    + More
22057054    20075255    25830018   

EMBL

NWSH01002292    PCG68657.1    PCG68658.1    KQ460882    KPJ11482.1    KQ459875    + More
KPJ19636.1    GEZM01045163    GEZM01045162    JAV77888.1    NEVH01002725    PNF41351.1    NEVH01006721    PNF37230.1    NEVH01006980    PNF36330.1    NEVH01019375    PNF22597.1    GDHC01011760    JAQ06869.1    GBHO01033235    JAG10369.1    CM007900    OTG06758.1    NEVH01021933    PNF19227.1    KL367628    KFD61291.1    KL367553    KFD64618.1    GDHF01030254    JAI22060.1    KL367480    KFD71809.1    KL367691    KFD60150.1    KL367527    KFD66146.1    GBHO01033237    JAG10367.1    NCKU01012701    RWS00004.1    CM003610    KYP61818.1    KYP63036.1    KQ485638    KYP31826.1    GFWV01017285    MAA42013.1    AAZX01000499    LBMM01012645    KMQ86082.1    KQ483989    KYP38573.1    CM003606    KYP68287.1    KYP61490.1    GDHF01000873    JAI51441.1    GDHF01029905    JAI22409.1    CM003608    KYP66838.1    GBXI01017107    JAC97184.1    JYDL01000068    KRX18751.1    OIVN01006239    SPD28653.1    GFTR01008771    JAW07655.1    KYP66486.1    EU180847    ABW74566.1    KL367637    KFD61067.1    JYDO01000104    KRZ71003.1   

Proteomes

UP000218220    UP000053240    UP000235965    UP000215914    UP000285301    UP000075243    + More
UP000002358    UP000036403    UP000054630    UP000054843   

Pfam

PF13976   gag_pre-integrs        + More
PF13961   DUF4219
PF07727   RVT_2
PF00665   rve
PF00098   zf-CCHC
PF05380   Peptidase_A17
PF00078   RVT_1
PF05585   DUF1758

Interpro

IPR039537   Retrotran_Ty1/copia-like        + More
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       
IPR036397   RNaseH_sf       
IPR009056   Cyt_c-like_dom       
IPR008042   Retrotrans_Pao       
IPR000477   RT_dom       
IPR008737   Peptidase_asp_put       

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A2A4J959   A0A0N1ICY1   A0A194RU38   A0A1Y1LYU4   A0A2J7RKJ6   A0A2J7R8S8   + More
A0A2J7R668   A0A2J7Q1Z2   A0A146LH62   A0A0A9WRE3   A0A251T6N3   A0A2J7PSB2   A0A085MVP5   A0A085N572   A0A0K8U6S2   A0A085NQR3   A0A085MSF4   A0A085N9K0   A0A0A9WPH5   A0A3S3NIE3   A0A151T469   A0A151QNH5   A0A293MM55   K7J8U2   A0A0J7K6W1   A0A151R7U0   A0A151TMN9   A0A151T355   A0A0K8WJW9   A0A0K8U6X2   A0A151TIH6   A0A0A1WFC7   A0A0V0RWJ3   A0A2N9IWX1   A0A224X581   A0A151THM1   B6REL8   A0A085MV21   A0A0V1MGJ0  

PDB

3FRT     E-value=0.000135288,     Score=112

KEGG

101743802    K12192 charged multivesicular body protein 2B | (RefSeq) charged multivesicular body protein 2b

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0003676   GO:0008270   GO:0015074   GO:0000943   GO:0020037   GO:0009055   GO:0004491   GO:0003964   GO:0007034   GO:0005737   GO:0006434   GO:0004812   GO:0006418   GO:0009058   GO:0016742   GO:0003824  

PANTHER

PTHR11439  

Length:

1124

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04557

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00037

outside

1  -  1124

 

 

Pi

431.268556

Theta

197.344269

Tajima's D

2.740929

CLR

0.000392

CSRT

0.96285185740713

Interpretation

Possibly Balancing Selection