SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04444
Annotation
nanos-M_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.153
 

Sequence

CDS
ATGGATGTTCAAATACCGTTTATAGCTCATCATTCTGTAGGACAAACTTTTGAAGAAATTCTACCATCTACGTCTGCATACATTAAAAAACAGCCAGAGTTTTTGGAAAGTGGATGCATTTTGAAAAAAGATGCCTTACAGGCTGTGAAACTGGATCCCGCAGTTTTGGAGGCACAAATAACAGTGGAAACGAGAAAAATCGATGGAACCGATTCTACACAAACTCAAGTTTCTTCACAAGGAAGTGAATTACCCGCTGAGGCTCTGCGTGTCGACTTCAAGAAAATTGTGTCAATGCACGAGACAGCACTCCTCTCTTTGACTCCGGATCAGTATCAGTTCCTGCTAATTTACGTCGAAGCTCTTCGCCAGAAGCGAATTGGTTTACAAAAGCATTTTGAGTGCGCCTTCTGTAAGAAAAATGGGGAGTCAGTGTCATGGTACAGAACGCATGCTCTGAAGGATGGGCGCGGTCGGGTGAAGTGCCCTGTACTTAGAGGGTTCCGCTGCCCGCGCTGTGGGGCCACCGGGGACCGAGCTCACACCATTAAATATTGCCCACAGAACTCCGATTAA
Protein
MDVQIPFIAHHSVGQTFEEILPSTSAYIKKQPEFLESGCILKKDALQAVKLDPAVLEAQITVETRKIDGTDSTQTQVSSQGSELPAEALRVDFKKIVSMHETALLSLTPDQYQFLLIYVEALRQKRIGLQKHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFRCPRCGATGDRAHTIKYCPQNSD

Summary

Similarity
Belongs to the nanos family.
Pfam
PF05741   zf-nanos
Interpro
IPR024161   Znf_nanos-typ        + More
IPR008705   Nanos/Xcar2       
IPR038129   Nanos_sf       
Gene 3D
PDB
3ALR     E-value=7.40005e-13,     Score=175

Ontologies

Topology

Length:
191
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0086
Exp number, first 60 AAs:
0.00021
Total prob of N-in:
0.04561
outside
1  -  191
 
 

Population Genetic Test Statistics

Pi
174.094351
Theta
163.370133
Tajima's D
0.21072
CLR
0
CSRT
0.428528573571321
Interpretation
Uncertain
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