Silkworm Genome Informatics Database

Gene

KWMTBOMO04443

Pre Gene Modal

BGIBMGA014597

Annotation

Uncharacterized_protein_OBRU01_14229_[Operophtera_brumata]

Location

Bomo_Chr8(+):6768563-6770600 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.768

CDS

ATGAGCCCTCAAACGCCATGTTATGGTGACGCGAGAGTAGAGGCTAGAGGCGATGGCAGTGAGAGATTACTGGAAAGTATCAGCGTTTCGTCACGGATATCGGAATTCTGGGCAGACCAAACGCGACTCTGGTTTGTTCAGTTCGAGGCTGCCGTAGAAAGTCAACGGCTGTCAGATACGGCCAAGCAAAATCTGGTGATTACGAAGCTCTCTAAAAGCGCTATCGAACAAGTGAGTGATTTATTACTTGCACCTCTGGAAACGAATAAATATGAAACCTTGAAGGAGAGCGATTCAAATGAATATGTAGTTCATGTTAGGGACGCGATTAAGAAGTTCACACCAAAATCGTCACAACAACGTGATTCACGTAAAATCTTTGTTCACGCGGATTTGCGTACACGCTGTCATGTTTTGGACGTTTTGATTTGGTGA

Protein

MSPQTPCYGDARVEARGDGSERLLESISVSSRISEFWADQTRLWFVQFEAAVESQRLSDTAKQNLVITKLSKSAIEQVSDLLLAPLETNKYETLKESDSNEYVVHVRDAIKKFTPKSSQQRDSRKIFVHADLRTRCHVLDVLIW

Uniprot

A0A293LS00 A0A139WPP8 A0A139WPG8 A0A139WA14 A0A0V1BCK4 A0A2A4J8M7 + More
A0A151IXC5 D7GYF3 A0A0V0RCL1 D7EJX5 A0A212EUF0 D6WTN9 A0A2G8LNT2

Pubmed

18362917 19820115 22118469 29023486

EMBL

GFWV01005838 MAA30568.1 KQ971307 KYB29887.1 KYB29888.1 KQ971745 + More
KYB24749.1 JYDH01000061 KRY34788.1 NWSH01002598 PCG67884.1 KQ980825 KYN12433.1 GG695519 EFA13383.1 JYDL01000656 KRX12194.1 KQ971759 EFA12902.2 AGBW02012433 OWR45074.1 KQ971355 EFA07205.2 MRZV01000023 PIK61894.1

Proteomes

UP000007266 UP000054776 UP000218220 UP000078492 UP000054630 UP000007151 + More
UP000230750

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF10551   MULE
PF00078   RVT_1
PF17917   RT_RNaseH
PF17919   RT_RNaseH_2

Interpro

IPR012337   RNaseH-like_sf        + More
IPR001584   Integrase_cat-core
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR021109   Peptidase_aspartic_dom_sf
IPR018289   MULE_transposase_dom
IPR000477   RT_dom
IPR001969   Aspartic_peptidase_AS
IPR001995   Peptidase_A2_cat
IPR041373   RT_RNaseH
IPR041577   RT_RNaseH_2

SUPFAM

SSF53098 SSF53098 + More
SSF50630 SSF50630

Gene 3D

3.30.420.10 2.40.70.10

ProteinModelPortal

A0A293LS00 A0A139WPP8 A0A139WPG8 A0A139WA14 A0A0V1BCK4 A0A2A4J8M7 + More
A0A151IXC5 D7GYF3 A0A0V0RCL1 D7EJX5 A0A212EUF0 D6WTN9 A0A2G8LNT2

KEGG

NA

GO

GO:0003676 GO:0015074 GO:0005634 GO:0004190

Length:

144

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.12674

outside

1 - 144

Pi

179.372415

Theta

174.891741

Tajima's D

0.10206

CLR

0.489665

CSRT

0.4004799760012

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics