Gene

KWMTBOMO04440  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005381

Annotation

PREDICTED:_KRR1_small_subunit_processome_component_homolog_[Plutella_xylostella]

Location

Bomo_Chr8(-):6717434-6718582      View in EpiBrowser

Full name

KRR1 small subunit processome component       + More
KRR1 small subunit processome component homolog      

Alternative Name

KRR-R motif-containing protein 1
Protein dribble

Location in the cell

Nuclear   Reliability : 2.659

CDS

ATGGAAGTTGAAGAAACTAATTCAGTTGATAATGCTTGGGCTATGAAGATACCCAAATTTACACCCGACGATAACCCGCATGGCCTTTTAGAAGAAAAATTAGATTTAATTGAAGGAAGCTTAACAGTAAAAACAACAAGAAAAACTTGGGATCCATACATTATTATTAAAGCGCGAGACTTCATGAAGCTGTTATCGAGAAGTGTTCCGTTTGAACAAGCCTCTCGTGTGCTAGATGACGAAATTGGATGCGACATTATTAAAATTAATTCATTTGTTCGCAAAAAAGAAACCTTTTTGAAGAGACGGCAGAGGTTGATAGGACCTCAGGGTGTTACATTAAAATCCATTGAATTATTAACAGAATGCTATGTTTTAGTCCAAGGTAATACAGTATCTGCAGTAGGCCCCTATAAAGGTTTAGTGCAAGTAAGACGAATTGTTGAAGACACAATGAAAAATATACATCCTATGTACAATATAAAAAGTTTAATGATTAAAAGAGAATTAATGAAAGACCCAAGGCTAAAAAATGAAAGTTGGGATAGATTTCTGCCAACATTTAAGAGCAAGAATGTGCCAAGGAAGCAACCAAAGAAGAAAGCCAATAAAAAACCTTATACTCCATTCCCACCTCCACAACCTGAAAGTAAAATTGATAAGGAGTTGGCCACAGGGGAATACTTCCTTAAGGAAGATCAAAAGAAGGCAAAGATTCACCATGAAAAACAAGAGAAACAGGCTCAAGCTAAGAGAGTACGAGATGAACAAAGACAAAAAGATTTTATTCCTCCTCAAGAAAAAATAGAAAAACCTACAACATCAAGTACAACCACAGTAGATGTTGATCAACTAAAAGCAAAAATGAAAAAGTTTACAAAACGTAAATCACTAAAATGA

Protein

MEVEETNSVDNAWAMKIPKFTPDDNPHGLLEEKLDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELMKDPRLKNESWDRFLPTFKSKNVPRKQPKKKANKKPYTPFPPPQPESKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEKPTTSSTTTVDVDQLKAKMKKFTKRKSLK

Description

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. Binds to RNA. Required for female germline development, cell viability during eye development and for survival of dividing cells and epithelial cells during early wing disk development (By similarity).
Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. Binds to RNA. Required for female germline development, cell viability during eye development and for survival of dividing cells and epithelial cells during early wing disk development.

Subunit

Component of the ribosomal small subunit (SSU) processome.
Monomer. Component of the ribosomal small subunit (SSU) processome (By similarity).
Monomer. Component of the ribosomal small subunit (SSU) processome.

Similarity

Belongs to the KRR1 family.

Keywords

Coiled coil   Complete proteome   Developmental protein   Nucleus   Reference proteome   Ribonucleoprotein   Ribosome biogenesis   RNA-binding   rRNA processing  

Feature

chain  KRR1 small subunit processome component homolog

Uniprot

H9J789   A0A0L7L2S1   A0A2H1WNZ0   A0A194Q2S1   A0A1E1WK23   A0A194RBM6   + More
A0A3S2LEP6   A0A212FEJ3   S4Q083   A0A2A4IWZ9   A0A0L0CP20   A0A3B0JFV3   B4KF66   B4N0P7   A0A1W4UPX0   A0A1I8PI01   Q9VPU8   A0A232FKB0   B3N899   K7J0K1   A0A0J9QTL3   A0A1I8MSS8   Q29M77   B4G9L6   B3MM49   B4P2Y8   A0A1B0DJW7   A0A0M8ZRI7   B4JDU5   A0A067R3W7   W8BR48   A0A154PQF0   A0A1B0CAR7   A0A2P8Y6M2   A0A034W1D5   A0A2J7R4X3   A0A0L7RGS6   E2B4R9   B4LTY6   A0A1A9WW01   A0A0M4END3   G3MRU3   A0A0M3QTW6   A0A224Z8D0   A0A131YRW9   A0A1E1XA84   A0A195CJG2   A0A0J7K090   A0A224XFH1   A0A0P4X4M7   A0A1B6MKU8   A0A1L8DS06   E2A7V2   A0A1B6DNS0   A0A1Y1LEQ7   A0A0P5GEB9   A0A151X940   A0A0C9R433   A0A158NYP2   A0A0A9WY59   D3TMN4   A0A195B1M7   A0A158NYP3   E9FX85   A0A1A9XYK3   A0A1B0BVG8   A0A0P5F644   A0A026WMW7   A0A195FTF6   J3JWR7   F4WY06   A0A1A9VDS1   A0A1B0ACG1   A0A069DSB8   E9J4V8   A0A151J8I4   A0A182JT84   A0A3Q0J208   A0A3Q0IWY5   T1IN01   A0A1W4XBL7   Q17NI6   L7LVX6   A0A182V9M2   A0A023F8J4   A0A182QZZ6   A0A182PME4   A0A182TYL8   B7P7L2   A0A1B6FB10   A0A1B6HJG1   A0A182WTA3   R4G807   A0A182HV97   A0A182NE52   A0A182L248   A0A182HEA8   A0A1Z5KWJ1   Q7PNG4   A0A182F4H6  

Pubmed

19121390    26227816    26354079    22118469    23622113    26108605    + More
17994087    11359931    10731132    12537572    16542639    28648823    20075255    22936249    25315136    15632085    24845553    24495485    29403074    25348373    20798317    22216098    28797301    26830274    28503490    28004739    21347285    25401762    26823975    20353571    21292972    24508170    30249741    22516182    21719571    26334808    21282665    17510324    25576852    25474469    20966253    26483478    28528879    12364791    14747013    17210077   

EMBL

BABH01013634    JTDY01003315    KOB69757.1    ODYU01010002    SOQ54791.1    KQ459589    + More
KPI97705.1    GDQN01003700    JAT87354.1    KQ460397    KPJ15238.1    RSAL01000025    RVE52132.1    AGBW02008921    OWR52185.1    GAIX01000238    JAA92322.1    NWSH01005252    PCG64335.1    JRES01000119    KNC34021.1    OUUW01000004    SPP79112.1    CH933807    EDW13049.1    CH963920    EDW77660.1    Z96931    AE014134    AY069529    AAF51440.1    AAL39674.1    CAB09659.1    NNAY01000079    OXU31186.1    CH954177    EDV57286.1    CM002910    KMY87396.1    CH379060    EAL33817.1    CH479180    EDW29046.1    CH902620    EDV30864.1    CM000157    EDW87195.1    AJVK01001180    KQ435944    KOX68173.1    CH916368    EDW03465.1    KK852777    KDR16777.1    GAMC01005013    JAC01543.1    KQ435037    KZC14145.1    AJWK01004213    PYGN01000865    PSN39901.1    GAKP01010453    JAC48499.1    NEVH01007399    PNF35886.1    KQ414596    KOC70060.1    GL445595    EFN89298.1    CH940649    EDW65039.1    CP012523    ALC37932.1    JO844594    AEO36211.1    ALC39599.1    GFPF01011546    MAA22692.1    GEDV01007229    JAP81328.1    GFAC01003015    JAT96173.1    KQ977696    KYN00572.1    LBMM01018169    KMQ83858.1    GFTR01005209    JAW11217.1    GDIP01247012    JAI76389.1    GEBQ01003464    JAT36513.1    GFDF01004954    JAV09130.1    GL437408    EFN70489.1    GEDC01010276    GEDC01009980    JAS27022.1    JAS27318.1    GEZM01057707    JAV72129.1    GDIQ01247759    JAK03966.1    KQ982392    KYQ56882.1    GBYB01001571    GBYB01001572    JAG71338.1    JAG71339.1    ADTU01004150    ADTU01004151    GBHO01030950    GBRD01002100    GDHC01003930    JAG12654.1    JAG63721.1    JAQ14699.1    CCAG010015664    EZ422686    ADD18962.1    KQ976681    KYM78185.1    GL732526    EFX88312.1    JXJN01021276    GDIQ01259768    JAJ91956.1    KK107151    QOIP01000003    EZA57375.1    RLU24412.1    KQ981276    KYN43738.1    BT127685    AEE62647.1    GL888434    EGI60887.1    GBGD01002069    JAC86820.1    GL768119    EFZ12156.1    KQ979528    KYN21146.1    JH431114    CH477199    EAT48230.1    GACK01009282    JAA55752.1    GBBI01001060    JAC17652.1    AXCN02000870    ABJB010407401    ABJB010450657    ABJB011091937    DS652454    EEC02584.1    GECZ01022319    JAS47450.1    GECU01032914    JAS74792.1    ACPB03003277    GAHY01001802    JAA75708.1    APCN01002503    JXUM01035313    KQ561054    KXJ79854.1    GFJQ02007478    JAV99491.1    AAAB01008964    EAA12217.4   

Proteomes

UP000005204    UP000037510    UP000053268    UP000053240    UP000283053    UP000007151    + More
UP000218220    UP000037069    UP000268350    UP000009192    UP000007798    UP000192221    UP000095300    UP000000803    UP000215335    UP000008711    UP000002358    UP000095301    UP000001819    UP000008744    UP000007801    UP000002282    UP000092462    UP000053105    UP000001070    UP000027135    UP000076502    UP000092461    UP000245037    UP000235965    UP000053825    UP000008237    UP000008792    UP000091820    UP000092553    UP000078542    UP000036403    UP000000311    UP000075809    UP000005205    UP000092444    UP000078540    UP000000305    UP000092443    UP000092460    UP000053097    UP000279307    UP000078541    UP000007755    UP000078200    UP000092445    UP000078492    UP000075881    UP000079169    UP000192223    UP000008820    UP000075903    UP000075886    UP000075885    UP000075902    UP000001555    UP000076407    UP000015103    UP000075840    UP000075884    UP000075882    UP000069940    UP000249989    UP000007062    UP000069272   

PRIDE

H9J789    B4KF66    Q9VPU8    B4G9L6    B3MM49    B4JDU5    + More
B4LTY6   

Pfam

PF17903   KH_8        + More
PF00013   KH_1

Interpro

IPR036612   KH_dom_type_1_sf        + More
IPR004087   KH_dom       
IPR041174   KH_8       
IPR024166   rRNA_assembly_KRR1       
IPR004088   KH_dom_type_1       

SUPFAM

SSF54791   SSF54791       

Gene 3D

3.30.1370.10    

ProteinModelPortal

H9J789   A0A0L7L2S1   A0A2H1WNZ0   A0A194Q2S1   A0A1E1WK23   A0A194RBM6   + More
A0A3S2LEP6   A0A212FEJ3   S4Q083   A0A2A4IWZ9   A0A0L0CP20   A0A3B0JFV3   B4KF66   B4N0P7   A0A1W4UPX0   A0A1I8PI01   Q9VPU8   A0A232FKB0   B3N899   K7J0K1   A0A0J9QTL3   A0A1I8MSS8   Q29M77   B4G9L6   B3MM49   B4P2Y8   A0A1B0DJW7   A0A0M8ZRI7   B4JDU5   A0A067R3W7   W8BR48   A0A154PQF0   A0A1B0CAR7   A0A2P8Y6M2   A0A034W1D5   A0A2J7R4X3   A0A0L7RGS6   E2B4R9   B4LTY6   A0A1A9WW01   A0A0M4END3   G3MRU3   A0A0M3QTW6   A0A224Z8D0   A0A131YRW9   A0A1E1XA84   A0A195CJG2   A0A0J7K090   A0A224XFH1   A0A0P4X4M7   A0A1B6MKU8   A0A1L8DS06   E2A7V2   A0A1B6DNS0   A0A1Y1LEQ7   A0A0P5GEB9   A0A151X940   A0A0C9R433   A0A158NYP2   A0A0A9WY59   D3TMN4   A0A195B1M7   A0A158NYP3   E9FX85   A0A1A9XYK3   A0A1B0BVG8   A0A0P5F644   A0A026WMW7   A0A195FTF6   J3JWR7   F4WY06   A0A1A9VDS1   A0A1B0ACG1   A0A069DSB8   E9J4V8   A0A151J8I4   A0A182JT84   A0A3Q0J208   A0A3Q0IWY5   T1IN01   A0A1W4XBL7   Q17NI6   L7LVX6   A0A182V9M2   A0A023F8J4   A0A182QZZ6   A0A182PME4   A0A182TYL8   B7P7L2   A0A1B6FB10   A0A1B6HJG1   A0A182WTA3   R4G807   A0A182HV97   A0A182NE52   A0A182L248   A0A182HEA8   A0A1Z5KWJ1   Q7PNG4   A0A182F4H6  

PDB

5WYK     E-value=2.56106e-64,     Score=621

KEGG

101743195    K06961 ribosomal RNA assembly protein | (RefSeq) KRR1 small subunit processome component homolog

GO

GO:0006364   GO:0005730   GO:0003723   GO:0005654   GO:0007275   GO:1990904   GO:0032040   GO:0003676   GO:0005524   GO:0005737   GO:0006434   GO:0004812   GO:0006418   GO:0009058   GO:0016742   GO:0003824  

PANTHER

PTHR12581  

Subcellular location

  

Length:

299

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00624

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07152

outside

1  -  299

 

 

Pi

150.540713

Theta

158.739291

Tajima's D

-0.257542

CLR

0.135725

CSRT

0.299035048247588

Interpretation

Uncertain