Gene

KWMTBOMO04439

Pre Gene Modal

BGIBMGA005414

Annotation

PREDICTED:_serine--tRNA_ligase?_mitochondrial_[Papilio_polytes]

Location

Bomo_Chr8(+):6715133-6717427      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.807

CDS

ATGCAATTGTATAAAATTATCACAAAAACTTCTGAGGATAATCATGAATACGAAAGAATAAAGCAGGATTTATATGAAGCGCTAAGTATCTTACCAAATAAAACCCATCCTTTTGTAGAAGGAAAGTTTGAACCTCACATTGTCCATGAAATAAATAAAAAGAAAGATTTTGGAGAATACAAGCCTTTTGAATTCAGTGAAATAACAAGATTATTAAATTTAATGAGAATCGAGAAGCTGGGACACACCTGTGGTCATAAAAGTTATTACTTTTTTGGAGAACTAGCAGAATTAGAGGAAGCATTAATAAAATACACAGTAAAAAAATTACTTGATGACGGTTTTCAACTGATATCAGTACCTGACATCCTTGCTAGTAATGTTTTGGAGAGCTGTGGCATGTCTGTAAAAAGCGACAGAACACAGATTTATTCACTTGATCCACACCACCATGGAACTGACCTTTGTCTTTCTGGTACTGCAGAAATGTCTCTGGCTGGATTACTTGCAAACAGTGTACACAATATTAATGATTTGCCTTTGAAATTAGCTGCAGTAAGCAGGTGTTACAGAGCTGAAACTTCTAACTTGGCTGAAGAAAGGGGGATTTACAGAGTTCATCAATTCAATAAAGTTGAAATGTTTGTAGTTACTACTTCTGAACAATCTGAAGAAATGCTTGAAGTGATACGGAACACACAAGAAAAAATATTTACACCACTGGGAATATCTGTAAGGGTTTTAGATATGCCTCCTTATGAATTGGGTGCAGCGGCTTACAGAAAATATGACATGGAGGCATGGATGCCTGGTCGTCAAGCTTATGGTGAAATATCTAGCTGCAAAATTTATGAATGGAAAAAAGTTCATAATGAAGAACACTAA

Protein

MQLYKIITKTSEDNHEYERIKQDLYEALSILPNKTHPFVEGKFEPHIVHEINKKKDFGEYKPFEFSEITRLLNLMRIEKLGHTCGHKSYYFFGELAELEEALIKYTVKKLLDDGFQLISVPDILASNVLESCGMSVKSDRTQIYSLDPHHHGTDLCLSGTAEMSLAGLLANSVHNINDLPLKLAAVSRCYRAETSNLAEERGIYRVHQFNKVEMFVVTTSEQSEEMLEVIRNTQEKIFTPLGISVRVLDMPPYELGAAAYRKYDMEAWMPGRQAYGEISSCKIYEWKKVHNEEH

Uniprot

H9J7C2   A0A2H1WPB6   A0A0L7L359   A0A194RCP1   S4PBJ4   A0A194PY78   + More
A0A1Y1MME9   A0A067RFD8   A0A2J7R1H3   A0A2A4JAN4   D6X4B3   B4JS06   A0A182GRE5   A0A0M4ERI5   A0A1Q3F758   A0A182HAN3   B0WJ55   A0A1B6HU39   B4HDX5   A0A1B6CCF4   Q299G0   B4G547   B4MBK2   B3MSU8   A0A026WA61   B4KCY2   A0A3L8DIZ3   W8BJG1   A0A1B6G2W4   A0A084WF91   A0A182QL34   A0A1I8PB22   A0A1I8PAZ7   A0A1I8PB01   T1GUP6   A0A0K8TKE5   A0A1I8PB50   E9G1N4   A7US27   A0A182VNN4   A0A182PKY5   A0A182Y4T2   A0A1B6M1D8   A0A182IDQ8   B4QYJ1   B4N7Y6   A0A182XNG2   A0A182K5G7   A0A182U1W9   A0A182MFA0   Q9VF85   A0A0J7NMF3   E2A6Q6   E0VNG4   B3P0V2   A0A0N8C814   B4PS47   A0A182VV54   A0A0P6E0U7   A0A0P5GD71   A0A182RM50   A0A0P6D9L3   A0A182JD21   A0A0P5FD94   A0A2R7W3P7   A0A0P5WIE2   O18406   A0A034WMP8   A0A0L7R4H4   E2B6X9   A0A0L0CDY3   A0A0A1WUK3   A0A2G8KAW4   A0A182FMH6   A0A182NC43   A0A195CEQ6   A0A1I8MGL6   A0A158NJE5   A0A0K8U1P4   A0A154PDS0   A0A069DYU5   W5JTV7   A0A2M4BUF0   K7IPG9   A0A2M4BTI8   A0A0V0GCF3   A0A023F1Q1   A0A1W4VEG7   J9JN72   A0A182SSF5   A0A2S2QGJ2   A0A2M4AUB8   A0A2M4AUC1   A0A232FNS9   A0A151X507   A0A336LS85   A0A1B0BJV5   A0A2H8TUC4   A0A1A9VC69   F4WS27  

Pubmed

19121390    26227816    26354079    23622113    28004739    24845553    + More
18362917    19820115    17994087    26483478    15632085    24508170    30249741    24495485    24438588    26369729    21292972    12364791    14747013    17210077    25244985    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20798317    20566863    17550304    8816471    25348373    26108605    25830018    29023486    25315136    21347285    26334808    20920257    23761445    20075255    25474469    28648823    21719571   

EMBL

BABH01013633    BABH01013634    ODYU01010002    SOQ54792.1    JTDY01003315    KOB69756.1    + More
KQ460397    KPJ15239.1    GAIX01004591    JAA87969.1    KQ459589    KPI97704.1    GEZM01033128    JAV84397.1    KK852669    KDR18863.1    NEVH01008206    PNF34674.1    NWSH01002158    PCG69031.1    KQ971410    EEZ97530.1    CH916373    EDV94546.1    JXUM01082445    JXUM01082446    JXUM01082447    KQ563313    KXJ74080.1    CP012526    ALC47788.1    GFDL01011649    JAV23396.1    JXUM01031292    JXUM01031293    JXUM01031294    JXUM01031295    KQ560917    KXJ80360.1    DS231955    EDS28934.1    GECU01029527    JAS78179.1    CH480815    EDW42067.1    GEDC01026986    GEDC01026293    JAS10312.1    JAS11005.1    CM000070    EAL27743.2    CH479179    EDW24713.1    CH940656    EDW58473.1    CH902623    EDV30338.1    KK107364    EZA51914.1    CH933806    EDW17004.2    QOIP01000007    RLU20415.1    GAMC01005135    JAC01421.1    GECZ01012990    JAS56779.1    ATLV01023319    KE525342    KFB48885.1    AXCN02001427    CAQQ02392188    GDAI01002854    JAI14749.1    GL732529    EFX86781.1    AAAB01008811    EDO64479.2    GEBQ01010226    JAT29751.1    APCN01004772    CM000364    EDX12836.1    CH964232    EDW81237.1    AXCM01002357    AE014297    AY119252    AAF55175.1    AAM51112.1    AGB95980.1    LBMM01003333    KMQ93650.1    GL437183    EFN70896.1    DS235339    EEB14920.1    CH954181    EDV49000.1    GDIQ01105747    JAL45979.1    CM000160    EDW97467.1    GDIQ01069418    JAN25319.1    GDIQ01248097    JAK03628.1    GDIQ01088798    JAN05939.1    GDIQ01259318    JAJ92406.1    KK854188    PTY12825.1    GDIP01098733    LRGB01000007    JAM04982.1    KZS21936.1    Y14823    CAA75101.1    GAKP01002131    JAC56821.1    KQ414657    KOC65782.1    GL446060    EFN88554.1    JRES01000520    KNC30455.1    GBXI01012174    JAD02118.1    MRZV01000734    PIK45113.1    KQ977935    KYM98548.1    ADTU01017661    GDHF01032094    JAI20220.1    KQ434885    KZC10039.1    GBGD01001780    JAC87109.1    ADMH02000114    ETN67792.1    GGFJ01007247    MBW56388.1    GGFJ01007246    MBW56387.1    GECL01000614    JAP05510.1    GBBI01003474    JAC15238.1    ABLF02036424    GGMS01007676    MBY76879.1    GGFK01011065    MBW44386.1    GGFK01011064    MBW44385.1    NNAY01000011    OXU32027.1    KQ982543    KYQ55379.1    UFQS01004709    UFQT01004709    SSX16558.1    SSX35761.1    JXJN01015632    JXJN01015633    GFXV01006049    MBW17854.1    GL888295    EGI63006.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000027135    UP000235965    + More
UP000218220    UP000007266    UP000001070    UP000069940    UP000249989    UP000092553    UP000002320    UP000001292    UP000001819    UP000008744    UP000008792    UP000007801    UP000053097    UP000009192    UP000279307    UP000030765    UP000075886    UP000095300    UP000015102    UP000000305    UP000007062    UP000075903    UP000075885    UP000076408    UP000075840    UP000000304    UP000007798    UP000076407    UP000075881    UP000075902    UP000075883    UP000000803    UP000036403    UP000000311    UP000009046    UP000008711    UP000002282    UP000075920    UP000075900    UP000075880    UP000076858    UP000053825    UP000008237    UP000037069    UP000230750    UP000069272    UP000075884    UP000078542    UP000095301    UP000005205    UP000076502    UP000000673    UP000002358    UP000192221    UP000007819    UP000075901    UP000215335    UP000075809    UP000092460    UP000078200    UP000007755   

PRIDE

H9J7C2    Q9VF85    O18406   

Pfam

PF00587   tRNA-synt_2b

Interpro

IPR006195   aa-tRNA-synth_II        + More
IPR002317   Ser-tRNA-ligase_type_1       
IPR002314   aa-tRNA-synt_IIb       
IPR033729   SerRS_core       
IPR010978   tRNA-bd_arm       
IPR042103   SerRS_1_N_sf       

SUPFAM

SSF46589   SSF46589       

Gene 3D

1.10.287.40    

CDD

cd00770  SerRS_core

ProteinModelPortal

H9J7C2   A0A2H1WPB6   A0A0L7L359   A0A194RCP1   S4PBJ4   A0A194PY78   + More
A0A1Y1MME9   A0A067RFD8   A0A2J7R1H3   A0A2A4JAN4   D6X4B3   B4JS06   A0A182GRE5   A0A0M4ERI5   A0A1Q3F758   A0A182HAN3   B0WJ55   A0A1B6HU39   B4HDX5   A0A1B6CCF4   Q299G0   B4G547   B4MBK2   B3MSU8   A0A026WA61   B4KCY2   A0A3L8DIZ3   W8BJG1   A0A1B6G2W4   A0A084WF91   A0A182QL34   A0A1I8PB22   A0A1I8PAZ7   A0A1I8PB01   T1GUP6   A0A0K8TKE5   A0A1I8PB50   E9G1N4   A7US27   A0A182VNN4   A0A182PKY5   A0A182Y4T2   A0A1B6M1D8   A0A182IDQ8   B4QYJ1   B4N7Y6   A0A182XNG2   A0A182K5G7   A0A182U1W9   A0A182MFA0   Q9VF85   A0A0J7NMF3   E2A6Q6   E0VNG4   B3P0V2   A0A0N8C814   B4PS47   A0A182VV54   A0A0P6E0U7   A0A0P5GD71   A0A182RM50   A0A0P6D9L3   A0A182JD21   A0A0P5FD94   A0A2R7W3P7   A0A0P5WIE2   O18406   A0A034WMP8   A0A0L7R4H4   E2B6X9   A0A0L0CDY3   A0A0A1WUK3   A0A2G8KAW4   A0A182FMH6   A0A182NC43   A0A195CEQ6   A0A1I8MGL6   A0A158NJE5   A0A0K8U1P4   A0A154PDS0   A0A069DYU5   W5JTV7   A0A2M4BUF0   K7IPG9   A0A2M4BTI8   A0A0V0GCF3   A0A023F1Q1   A0A1W4VEG7   J9JN72   A0A182SSF5   A0A2S2QGJ2   A0A2M4AUB8   A0A2M4AUC1   A0A232FNS9   A0A151X507   A0A336LS85   A0A1B0BJV5   A0A2H8TUC4   A0A1A9VC69   F4WS27  

PDB

1WLE     E-value=1.50953e-54,     Score=537

KEGG

101743331    K01875 seryl-tRNA synthetase [EC:6.1.1.11] | (RefSeq) serine--tRNA ligase, mitochondrial

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0006434   GO:0004828   GO:0005524   GO:0005737   GO:0070158   GO:0005739   GO:0000166   GO:0004812   GO:0006418   GO:0009058   GO:0016742   GO:0003824  

PANTHER

PTHR11778  

Length:

294

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00371

Exp number, first 60 AAs:

0

Total prob of N-in:

0.09551

outside

1  -  294

 

 

Pi

13.894137

Theta

11.772565

Tajima's D

0.142188

CLR

0

CSRT

0.419529023548823

Interpretation

Uncertain