Gene

KWMTBOMO04435

Annotation

integrase_core_domain_protein_[Lasius_niger]

Location

Bomo_Chr8(+):6681283-6683007      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.962

CDS

ATGACCAAAGATTATGAGTTAAGTCGCTGCGTGACCATGTTTACGTCAGAAAATAATGACGACTATGACTGCTCTTTACTAACATACAAAGAAGCTGTGACTGGCACCGACAGACGAAATTGGGAGAAGGCGATACAATCTGAAATGGAATCATTACAGAAAAATAACACCTGGGTATTAGTAGACAAGTCAGAAGCCAAAGGACACAAAATACTGTCGAACAAATGGGTATTTCGGATTAAAGATGACGGTACGTACAAGGCTAGATTAGTCGTACGTGGATGCGAGCAGAAAGGAAACCTGGATTTCGAAGACATTTATAGCCCAGTAGTAAGTCAATCTGCATTAAAAACTTTATTAGCAATTGCCGCATCTAAATCTTACTACTTCATGACATTTGACATCAAGACAGCTTTCTTATACGGAGAGTTATCAGATGAAGTTTATATGAAATTGCCTGTTGGCTATGAGACTAACTGCAATACTACTGAAGTAGTTTGCCGATTAAAAAAATCTTTGTACGGATTAAAACAAGCTCCATTTACATGGAACAAAACTTTTACCCAAGCGATGTTTGATTTGGGATTCAAGACAATCAAAACAGATCGATGCGTTTTCATAAACGAAGATAAGTCAATAATAATCGGACTATTCGTTGATGATGGACTTGTCCTAGGAAAAGATAAGAAAAAGATCGAAGCTATTTTGAAGAAACTTGAAACCAAATTTCAAATGAAAAAGAATGAAAATCCAAGTACTTATCTGGGTATGGAAATAAAAAACTCAAAAGAAGGAATAATTCTTACTCAGAGATCCTACATAAATGACGTACTGGAAAAATACAACATGAAAAATGCCAAACCTTGTGACACGCCCGCAAGTAGCGATTCAAAGTCGATACAGGAAACTGCCCAGGAGAAGGAATATCCCTATAGGGAAGCAGTGGGAAGTTTACTGTACCTGTCTACCAGAACCAGACCAGATATCGCACAAGCGGTCAATCTAGTTAGCAGGAAGGTCGAAAACCCCACTAGAGAAGACGTTACAAAAGTGAAGAAAATATTCAAATATTTAGTGGGAACCAAACATAAAGGCATTTTATTCAAACGAAACAAACCGATAGAGAGCATCGATGCTTACAGTGACTCGGATTATGCTGGAGACCCATTGACGAGAAGAAGCACTTCTGGTTCCGTGCTAATGATAGCCGATGGACCAATATCATGGGCATCCAAGAGGCAGCCTATAGTAGCGCTATCGTCGACTGAAGCCGAGTACATAGCCGCAGCCGACTGTTGCAAAGAGGCATTGTATCTCAAATCTCTATTACAGGAAATAACCGGTTTGGACATAAAAATAAATCTACATGTTGATAACCAAAGTTCGATTCAACTTGTGAAGTCTGGATCCTTCAACAAAAGGTCGAAGCACATAGACGTGCGGTACCATTTTATACATGAACACTTCGTGCATGGATTAATAAATATTAGCTACTGTCCCACAGAAATTCAGTTAGCTGACGTAATGACAAAACCATTGTCAAAAGTAAAATTTGAAAGACACTGTGCAAGATTAATGCATGTATAG

Protein

MTKDYELSRCVTMFTSENNDDYDCSLLTYKEAVTGTDRRNWEKAIQSEMESLQKNNTWVLVDKSEAKGHKILSNKWVFRIKDDGTYKARLVVRGCEQKGNLDFEDIYSPVVSQSALKTLLAIAASKSYYFMTFDIKTAFLYGELSDEVYMKLPVGYETNCNTTEVVCRLKKSLYGLKQAPFTWNKTFTQAMFDLGFKTIKTDRCVFINEDKSIIIGLFVDDGLVLGKDKKKIEAILKKLETKFQMKKNENPSTYLGMEIKNSKEGIILTQRSYINDVLEKYNMKNAKPCDTPASSDSKSIQETAQEKEYPYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKVKKIFKYLVGTKHKGILFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAADCCKEALYLKSLLQEITGLDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIHEHFVHGLINISYCPTEIQLADVMTKPLSKVKFERHCARLMHV

Similarity

Belongs to the terpene synthase family.

Uniprot

A0A0A9YCF4   A0A1B6C2D3   A0A0V0G477   A0A0A9W6J9   A0A0A9WDS7   A0A0A9WIY3   + More
A0A0A9Z2D6   A0A0A9X817   A0A0A9YZ93   A0A146M489   A0A0A9XEU3   A0A0A9X3Z4   A0A0A9YMV4   A0A1B6FNY3   A0A1Y1LVN7   A0A2S2NXV8   A0A146LHR9   X1X8M7   A0A0J7KC73   A0A0K8TKJ8   X1XTZ0   X1WLH4   A0A139WJX6   A0A0V1NCR1   A0A0J7KE66   A0A2N9GRB2   A0A1Y1NM77   A0A2N9GCE7   A0A0J7K689   A0A1Y1KNM9   A0A2N9I7V5   A0A085MTW9   A0A0J7K725   A0A1Y1N3G5   A0A2N9GBS9   A0A2N9HJ76   A0A151TNJ8   A0A2N9FRN5   A0A2N9ELY1   A0A0V0WRK3   B8YLY7   A0A2N9FZ01   A0A2N9FQJ1   A0A2N9I8Q5   A0A2N9EK90   A0A2N9FV67   A0A2N9EIR6   A0A1Y1MYL6   A0A2N9H6B2   A0A1Y1MYL8   A0A2N9I6N4   A0A0V1HMN9   A0A0J7KRG1   A0A182H8F8   A0A2N9GA80   A0A2N9GGS7   A0A2N9ID98   A0A1J3DEI6   A0A2N9GBF3   A0A2N9FW82   A0A2N9IGN4   A0A2N9ETC8   A0A0V1IW77   A0A151R2G6   A0A151SDY6   A0A2N9HKJ4   A0A2N9GRZ0   A0A0V0YKY1   A0A151R6U8   A0A151TKT1   A0A151T7T6   B8YLY5   A0A2N9EPH6   A0A1Y1M571   B8YLY3   A0A2N9I1P0   A0A3S3PPW2   A0A151RJN4   A0A151UC72   A0A151UBW1   A0A0V1M1K0   A0A2N9J5P5   I1PXS4   A0A2N9H0T6   A0A0V1B5K0   B8YLY6   A0A0V1B5A2   A0A2N9IUP8   A0A2N9FGL6   A0A2N9I9F7   A0A2N9H4V1   A0A2N9EE21   A0A2N9H4R5   A0A2N9F2B1   A0A0V0TK25   A0A2N9I1C6   A0A0V1DTZ3   A0A1W7R6J6   A0A0P4YJD7   A0A1W7R6K6  

Pubmed

25401762    26823975    28004739    26369729    18362917    19820115    + More
24929829    22057054    19656907    26483478   

EMBL

GBHO01016409    JAG27195.1    GEDC01029908    JAS07390.1    GECL01003258    JAP02866.1    + More
GBHO01040573    JAG03031.1    GBHO01040574    JAG03030.1    GBHO01035865    JAG07739.1    GBHO01006096    JAG37508.1    GBHO01028636    GBHO01028635    JAG14968.1    JAG14969.1    GBHO01035869    GBHO01006095    JAG07735.1    JAG37509.1    GDHC01005053    JAQ13576.1    GBHO01024362    JAG19242.1    GBHO01031779    JAG11825.1    GBHO01012744    JAG30860.1    GECZ01017843    JAS51926.1    GEZM01048830    JAV76370.1    GGMR01009345    MBY21964.1    GDHC01010945    JAQ07684.1    ABLF02042027    LBMM01009639    KMQ87973.1    GDAI01002967    JAI14636.1    ABLF02043571    ABLF02045585    ABLF02057174    ABLF02063637    ABLF02063640    ABLF02026843    KQ971338    KYB28117.1    JYDM01000512    KRZ81798.1    LBMM01008978    KMQ88491.1    OIVN01002268    SPD02135.1    GEZM01002084    JAV97376.1    OIVN01001729    SPC97049.1    LBMM01012772    KMQ86003.1    GEZM01078128    GEZM01078127    JAV63002.1    OIVN01004910    SPD19931.1    KL367655    KFD60665.1    LBMM01012536    KMQ86167.1    GEZM01013586    JAV92451.1    OIVN01001707    SPC96839.1    OIVN01003897    SPD14257.1    CM003606    KYP68590.1    OIVN01001091    SPC89740.1    OIVN01000183    SPC75833.1    JYDK01000067    KRX78390.1    FJ544857    ACL97387.1    OIVN01001309    SPC92453.1    OIVN01001052    SPC89229.1    OIVN01005024    SPD20514.1    OIVN01000147    SPC75222.1    OIVN01001196    SPC91020.1    OIVN01000116    SPC74628.1    GEZM01017329    JAV90762.1    OIVN01002904    SPD07378.1    GEZM01017328    JAV90763.1    OIVN01004879    SPD19723.1    JYDS01000349    KRZ11769.1    LBMM01003976    KMQ92933.1    JXUM01118474    KQ566190    KXJ70335.1    OIVN01001666    SPC96375.1    OIVN01001890    SPC98658.1    OIVN01005312    SPD21871.1    GEVI01015824    JAU16496.1    OIVN01001669    SPC96464.1    OIVN01001520    SPC94877.1    OIVN01005657    SPD23465.1    OIVN01000557    SPC82046.1    JYDS01000077    KRZ26987.1    KQ484186    KYP36645.1    KQ483417    KYP53032.1    OIVN01003569    SPD12194.1    OIVN01002256    SPD02034.1    JYDU01000007    KRY00737.1    KQ484038    KYP38095.1    CM003607    KYP67664.1    CM003610    KYP63120.1    FJ544854    ACL97385.1    OIVN01000230    SPC76722.1    GEZM01040221    GEZM01040220    JAV80932.1    FJ544851    ACL97383.1    OIVN01004603    SPD18338.1    NCKU01004452    RWS05910.1    KQ483702    KYP42748.1    CM003603    KYP76811.1    KYP76810.1    JYDO01000312    KRZ65659.1    OIVN01006372    SPD31671.1    OIVN01002680    SPD05612.1    JYDH01000102    KRY32233.1    FJ544856    ACL97386.1    KRY32232.1    OIVN01006259    SPD29117.1    OIVN01000823    SPC86071.1    OIVN01005059    SPD20680.1    OIVN01002854    SPD06945.1    OIVN01000036    SPC73022.1    OIVN01002812    SPD06621.1    OIVN01000758    SPC85117.1    JYDJ01000235    KRX39370.1    OIVN01004563    SPD18125.1    JYDR01000237    KRY65040.1    GEHC01000868    JAV46777.1    GDIP01229956    JAI93445.1    GEHC01000867    JAV46778.1   

Proteomes

UP000007819    UP000036403    UP000007266    UP000054924    UP000075243    UP000054673    + More
UP000054805    UP000069940    UP000249989    UP000054815    UP000285301    UP000054843    UP000007306    UP000054776    UP000055048    UP000054632   

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF01397   Terpene_synth
PF03936   Terpene_synth_C

Interpro

IPR013103   RVT_2        + More
IPR012337   RNaseH-like_sf       
IPR036397   RNaseH_sf       
IPR039537   Retrotran_Ty1/copia-like       
IPR025724   GAG-pre-integrase_dom       
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR008949   Isoprenoid_synthase_dom_sf       
IPR005630   Terpene_synthase_metal-bd       
IPR008930   Terpenoid_cyclase/PrenylTrfase       
IPR034741   Terpene_cyclase-like_1_C       
IPR036965   Terpene_synth_N_sf       
IPR001906   Terpene_synth_N       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF48576   SSF48576       
SSF48239   SSF48239       

Gene 3D

3.30.420.10     1.10.600.10     1.50.10.130    

ProteinModelPortal

A0A0A9YCF4   A0A1B6C2D3   A0A0V0G477   A0A0A9W6J9   A0A0A9WDS7   A0A0A9WIY3   + More
A0A0A9Z2D6   A0A0A9X817   A0A0A9YZ93   A0A146M489   A0A0A9XEU3   A0A0A9X3Z4   A0A0A9YMV4   A0A1B6FNY3   A0A1Y1LVN7   A0A2S2NXV8   A0A146LHR9   X1X8M7   A0A0J7KC73   A0A0K8TKJ8   X1XTZ0   X1WLH4   A0A139WJX6   A0A0V1NCR1   A0A0J7KE66   A0A2N9GRB2   A0A1Y1NM77   A0A2N9GCE7   A0A0J7K689   A0A1Y1KNM9   A0A2N9I7V5   A0A085MTW9   A0A0J7K725   A0A1Y1N3G5   A0A2N9GBS9   A0A2N9HJ76   A0A151TNJ8   A0A2N9FRN5   A0A2N9ELY1   A0A0V0WRK3   B8YLY7   A0A2N9FZ01   A0A2N9FQJ1   A0A2N9I8Q5   A0A2N9EK90   A0A2N9FV67   A0A2N9EIR6   A0A1Y1MYL6   A0A2N9H6B2   A0A1Y1MYL8   A0A2N9I6N4   A0A0V1HMN9   A0A0J7KRG1   A0A182H8F8   A0A2N9GA80   A0A2N9GGS7   A0A2N9ID98   A0A1J3DEI6   A0A2N9GBF3   A0A2N9FW82   A0A2N9IGN4   A0A2N9ETC8   A0A0V1IW77   A0A151R2G6   A0A151SDY6   A0A2N9HKJ4   A0A2N9GRZ0   A0A0V0YKY1   A0A151R6U8   A0A151TKT1   A0A151T7T6   B8YLY5   A0A2N9EPH6   A0A1Y1M571   B8YLY3   A0A2N9I1P0   A0A3S3PPW2   A0A151RJN4   A0A151UC72   A0A151UBW1   A0A0V1M1K0   A0A2N9J5P5   I1PXS4   A0A2N9H0T6   A0A0V1B5K0   B8YLY6   A0A0V1B5A2   A0A2N9IUP8   A0A2N9FGL6   A0A2N9I9F7   A0A2N9H4V1   A0A2N9EE21   A0A2N9H4R5   A0A2N9F2B1   A0A0V0TK25   A0A2N9I1C6   A0A0V1DTZ3   A0A1W7R6J6   A0A0P4YJD7   A0A1W7R6K6  

KEGG

101736913    no KO assigned | (RefSeq) uncharacterized LOC101736913

GO

GO:0003676   GO:0015074   GO:0000943   GO:0008270   GO:0000287   GO:0010333  

PANTHER

PTHR11439  

Length:

528

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00914

outside

1  -  528

 

 

Pi

312.542424

Theta

207.215607

Tajima's D

1.930515

CLR

0

CSRT

0.870606469676516

Interpretation

Uncertain