SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04432
Pre Gene Modal
BGIBMGA005410
Annotation
nanos-like_protein_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.545
 

Sequence

CDS
ATGGATTCCATGTCATATAACTTCAATATGGAAGATGAGAAGCCTATTTTTACAACAGCTAGCGATGTTACAACCACGACTACGACTGAGAGTTACACGACGACTGGCTTAGACAATATAACCATCAACAGCCAAGAGGGATCATTCTCAGCTACAACGCCATCGTTTCAAAGAGGAGGAAATGATCTTCTCAACTTACTAGCTCGGCAGGAACCAAGAGCCGCGGATCCCGCTCCAAATAGCACCGAAATGGAAGACATTCTACTGAACATGCGACTCAATGGCACTGACCCGCTATTCGATGATATGGATCCAAATCATAACTACTTTCTGGGGGGGCGTCCAGAGTCCGTGGCATCGTCTAATCTGTGGAATGATAATTCAAGTGTGTCGGGAGCTAGAAACGGCGAAATGATGGACACTTTTGACTTTCTCATCAAAAGTTTGTCATCTGCTAACAACTACGTGTCGATGTTGACGCGGGAACAACTCTCGGTACTACGTTCGATTCGACCTAGTCTCTTGTACGAGTTTCTGCAGGAGGTCGCTAAAGTTCGCAGTGATAGAAGAATGCGCAGGGCTCTACCTAACGAATGCGCATTTTGTAAGAACAACGGTGAGAATGAAGAGTGTTACTCTTCGCATGCACTGAAGGATTGGCGCGGGCGTGTACTATGTCCGGTGCTGCGTGCTTTCCGCTGTCCGCGGTGCGGCGCCACCGGTGACCGCGCTCACACAATCAAATACTGCCCGGAGAACTCTGATGCTAGTTCCGATCGTTCTGGAAGTTTGTCCGCGCGTCGTCGCGTGCCACCATCGGCTTCATTGGTTATGGGCGGGACGAACAGAACAGGCTTTGGACCCCTGACTCCTAGCGCGCCAGCTTCTTCACCCGTACCTACTTCTACTTCGTTCCCGAACTCTTCATTCTGGACAAGTTTCAGCATGAACTAA
Protein
MDSMSYNFNMEDEKPIFTTASDVTTTTTTESYTTTGLDNITINSQEGSFSATTPSFQRGGNDLLNLLARQEPRAADPAPNSTEMEDILLNMRLNGTDPLFDDMDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEMMDTFDFLIKSLSSANNYVSMLTREQLSVLRSIRPSLLYEFLQEVAKVRSDRRMRRALPNECAFCKNNGENEECYSSHALKDWRGRVLCPVLRAFRCPRCGATGDRAHTIKYCPENSDASSDRSGSLSARRRVPPSASLVMGGTNRTGFGPLTPSAPASSPVPTSTSFPNSSFWTSFSMN

Summary

Similarity
Belongs to the nanos family.
Pfam
PF05741   zf-nanos
Interpro
IPR024161   Znf_nanos-typ        + More
IPR038129   Nanos_sf       
IPR008705   Nanos/Xcar2       
Gene 3D
PDB
5KL8     E-value=1.6122e-14,     Score=192

Ontologies

Topology

Length:
317
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00139
Exp number, first 60 AAs:
0
Total prob of N-in:
0.02928
outside
1  -  317
 
 

Population Genetic Test Statistics

Pi
200.139261
Theta
184.885702
Tajima's D
0.211734
CLR
39.461277
CSRT
0.43592820358982
Interpretation
Uncertain
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