Gene

KWMTBOMO04427  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005409

Annotation

PREDICTED:_signal_recognition_particle_receptor_beta_subunit_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr8(+):6468284-6471681      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.23 PlasmaMembrane   Reliability : 1.43

CDS

ATGGAATCTGAAGTGGTTAAAGAAAAGATTCATACAGAACCGATCCTGAACGATCCACGATACATAACCTTACTTAGCCTTATTGTTCTAGCAGTAACCCTCATATTTTGGTGGATTTTCTCTCGAAGGTATACTCTTCGCAACTCAGTATTGTTAATGGGCCTATCAGACTCTGGCAAGACTTTGCTGTTTGTAAGACTCGCTTACTCTCAATACAGACAGACTTTTACTTCTATGAAAGAAAATATTGAAGAGTATATAACTTCTAATAAAACATTGAAAATAGTTGATCTGCCTGGACAAGAGAGACTGAGAAATAAATTCTTTGAACAGCACAAGAGTAGTGCTAAGGGAATTGTGTTTGTGATTGATTCTATCAATATACAGAAAGAAATCAGAGATGTAGCAGAATACCTATACACAATCTTGTGTGATCCGATCATTCAGGGAAACACAACTCCCCTTCTAATATTGTGCAACAAACAGGACCAGCCATTAGCAAAAGGAAGCCAAGTTATCAAAGGATTACTCGAAAAAGAAATAAATTTAGTTCGTGTGACCAAATCGAATCAACTGCAGTCCGTCGATCCGTCTGAAGGCAACATCGGGTCGTTCCTAGGTAAAGAGGGTAAAGATTTCGAATTCTCTCACATTAGAAATAAAGTCGAATTCGCAGAGTGCTCGGCCAACACGAATGACGATGAAAATCCGACTGACATCAAGCCTCTGCAGGATTGGATCTCGAAGCTGTAG

Protein

MESEVVKEKIHTEPILNDPRYITLLSLIVLAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEGNIGSFLGKEGKDFEFSHIRNKVEFAECSANTNDDENPTDIKPLQDWISKL

Uniprot

H9J7B7   Q0N2R6   I4DJS1   A0A2A4IZT5   A0A212EI17   A0A194RBP0   + More
S4NYF6   A0A1E1WR94   A0A2H1WB90   A0A154PRJ6   A0A0J7P4Z5   A0A232FAT8   E2AUT6   K7IX44   A0A151WWI8   A0A195D7I8   E2BYA5   A0A088A8V7   A0A2A3EIM1   V9IGH1   A0A0M8ZV53   A0A158NNH1   F4WQH2   E0VFZ7   A0A195F6Z7   A0A2P8XMD1   A0A1L8DVQ5   A0A195DKN0   A0A2J7QR38   A0A0L7R3R7   A0A1B0D5W5   A0A026W8U0   T1IJD7   A0A1B6EEG2   A0A1Q3FWQ9   A0A0K8TSV2   A0A1Q3G1Z6   A0A1B6E0T6   A0A1S3DRH5   A0A067QGT4   A0A0P5TWP1   A0A023EKZ5   D6X187   A0A1S4FNN0   A0A034WBQ9   Q16UQ1   A0A0P5T3G0   A0A0K8V0M7   A0A0P4ZW46   A0A1S3D7Q3   A0A0P5BQL2   A0A0P5KBS0   A0A0A1WDW3   A0A0P5AIY1   A0A0P4YNH9   A0A1B1UZL3   A0A3S1HC35   A0A0P5KQH7   A0A0P6H7V8   A0A0P5X800   A0A0P6EWC5   A0A0P5PQT5   B5M0T7   A0A1Y1LVG5   A0A336LPP0   B4KZ72   A0A0P5H715   A0A069DR19   A0A0N8CBZ4   A0A0P6GWW0   A0A224XWH5   E9FSV7   A0A2M3ZL65   A0A1U7RVM5   A0A1B6EHE8   A0A3M6T4X4   A0A2M4AHE4   A0A2M3Z7P2   Q9VSN9   A0A224Z8M7   A0A182FFR9   Q6IDG2   A0A0M4ED82   A0A182R2F4   A0A2M4BY06   W5JAN6   A0A1B6K7G5   A0A2M4AIA6   A0A2M3ZKZ1   A0A2M4BY78   A0A0P4ZYV2   B4PFK3   B3M673   A0A087UR91   A0A182Q9H6   A0A2L2YLZ9   A0A131XE64   A0A0P4W032  

Pubmed

19121390    22651552    26354079    22118469    23622113    28648823    + More
20798317    20075255    21347285    21719571    20566863    29403074    24508170    30249741    26369729    24845553    24945155    18362917    19820115    25348373    17510324    25830018    19166301    28004739    17994087    26334808    21292972    30382153    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28797301    20920257    23761445    17550304    26561354    28049606    27129103   

EMBL

BABH01013609    DQ646415    ABH10805.1    AK401539    KQ459589    BAM18161.1    + More
KPI97689.1    NWSH01004148    PCG65427.1    AGBW02014758    OWR41110.1    KQ460397    KPJ15253.1    GAIX01013825    JAA78735.1    GDQN01001509    JAT89545.1    ODYU01007502    SOQ50328.1    KQ435087    KZC14536.1    LBMM01000096    KMR04984.1    NNAY01000601    OXU27447.1    GL442888    EFN62811.1    AAZX01000571    AAZX01006238    KQ982691    KYQ52253.1    KQ976749    KYN08817.1    GL451420    EFN79384.1    KZ288230    PBC31643.1    JR042163    AEY59566.1    KQ435855    KOX70646.1    ADTU01021600    GL888273    EGI63572.1    DS235129    EEB12303.1    KQ981744    KYN36223.1    PYGN01001735    PSN33114.1    GFDF01003591    JAV10493.1    KQ980765    KYN13406.1    NEVH01011988    PNF31046.1    KQ414661    KOC65535.1    AJVK01000417    KK107343    QOIP01000013    EZA52398.1    RLU15481.1    AFFK01020433    JH430253    GEDC01000959    JAS36339.1    GFDL01003028    JAV32017.1    GDAI01000390    JAI17213.1    GFDL01001210    JAV33835.1    GEDC01005801    JAS31497.1    KK853448    KDR07565.1    GDIP01121558    JAL82156.1    GAPW01003746    JAC09852.1    KQ971372    EFA10591.1    GAKP01005927    GAKP01005926    JAC53026.1    CH477616    EAT38257.1    GDIP01136061    JAL67653.1    GDHF01019913    JAI32401.1    GDIP01220000    GDIP01207948    GDIP01127962    LRGB01003123    JAJ15454.1    KZS04441.1    GDIP01182147    JAJ41255.1    GDIQ01244163    GDIQ01192831    GDIQ01173879    GDIQ01143795    GDIQ01031433    JAK58894.1    GBXI01017195    JAC97096.1    GDIP01198354    JAJ25048.1    GDIP01225099    JAI98302.1    KU568374    ANW09661.1    RQTK01000673    RUS76303.1    GDIQ01180732    JAK70993.1    GDIQ01212716    GDIQ01131602    GDIQ01042487    GDIQ01032936    JAN61801.1    GDIP01076113    JAM27602.1    GDIQ01057179    JAN37558.1    GDIQ01135551    JAL16175.1    EU930273    ACH56901.1    GEZM01050414    GEZM01050413    JAV75596.1    UFQT01000102    SSX20022.1    CH933809    EDW17869.1    GDIQ01230318    JAK21407.1    GBGD01002733    JAC86156.1    GDIQ01094707    JAL57019.1    GDIQ01027371    JAN67366.1    GFTR01003933    JAW12493.1    GL732524    EFX89260.1    GGFM01008449    MBW29200.1    GECZ01032422    JAS37347.1    RCHS01004337    RMX35930.1    GGFK01006821    MBW40142.1    GGFM01003781    MBW24532.1    AF181658    AE014296    AAD55443.1    AAF50377.2    AGB94291.1    GFPF01011758    MAA22904.1    BT014643    AAT27267.1    CP012525    ALC43508.1    GGFJ01008824    MBW57965.1    ADMH02001932    ETN60463.1    GECU01000308    JAT07399.1    GGFK01007141    MBW40462.1    GGFM01008448    MBW29199.1    GGFJ01008823    MBW57964.1    GDIP01209454    JAJ13948.1    CM000159    EDW93129.1    CH902618    EDV39693.2    KK121162    KFM79880.1    AXCN02000584    IAAA01039247    LAA09148.1    GEFH01003939    JAP64642.1    GDKW01001478    JAI55117.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000007151    UP000053240    UP000076502    + More
UP000036403    UP000215335    UP000000311    UP000002358    UP000075809    UP000078542    UP000008237    UP000005203    UP000242457    UP000053105    UP000005205    UP000007755    UP000009046    UP000078541    UP000245037    UP000078492    UP000235965    UP000053825    UP000092462    UP000053097    UP000279307    UP000079169    UP000027135    UP000007266    UP000008820    UP000076858    UP000271974    UP000009192    UP000000305    UP000189705    UP000275408    UP000000803    UP000069272    UP000092553    UP000075900    UP000000673    UP000002282    UP000007801    UP000054359    UP000075886   

PRIDE

H9J7B7    Q0N2R6    Q9VSN9    Q6IDG2   

Pfam

PF09439   SRPRB

Interpro

IPR019009   SRP_receptor_beta_su        + More
IPR027417   P-loop_NTPase       
IPR006689   Small_GTPase_ARF/SAR       
IPR005225   Small_GTP-bd_dom       

SUPFAM

SSF52540   SSF52540       

CDD

cd04105  SR_beta

ProteinModelPortal

H9J7B7   Q0N2R6   I4DJS1   A0A2A4IZT5   A0A212EI17   A0A194RBP0   + More
S4NYF6   A0A1E1WR94   A0A2H1WB90   A0A154PRJ6   A0A0J7P4Z5   A0A232FAT8   E2AUT6   K7IX44   A0A151WWI8   A0A195D7I8   E2BYA5   A0A088A8V7   A0A2A3EIM1   V9IGH1   A0A0M8ZV53   A0A158NNH1   F4WQH2   E0VFZ7   A0A195F6Z7   A0A2P8XMD1   A0A1L8DVQ5   A0A195DKN0   A0A2J7QR38   A0A0L7R3R7   A0A1B0D5W5   A0A026W8U0   T1IJD7   A0A1B6EEG2   A0A1Q3FWQ9   A0A0K8TSV2   A0A1Q3G1Z6   A0A1B6E0T6   A0A1S3DRH5   A0A067QGT4   A0A0P5TWP1   A0A023EKZ5   D6X187   A0A1S4FNN0   A0A034WBQ9   Q16UQ1   A0A0P5T3G0   A0A0K8V0M7   A0A0P4ZW46   A0A1S3D7Q3   A0A0P5BQL2   A0A0P5KBS0   A0A0A1WDW3   A0A0P5AIY1   A0A0P4YNH9   A0A1B1UZL3   A0A3S1HC35   A0A0P5KQH7   A0A0P6H7V8   A0A0P5X800   A0A0P6EWC5   A0A0P5PQT5   B5M0T7   A0A1Y1LVG5   A0A336LPP0   B4KZ72   A0A0P5H715   A0A069DR19   A0A0N8CBZ4   A0A0P6GWW0   A0A224XWH5   E9FSV7   A0A2M3ZL65   A0A1U7RVM5   A0A1B6EHE8   A0A3M6T4X4   A0A2M4AHE4   A0A2M3Z7P2   Q9VSN9   A0A224Z8M7   A0A182FFR9   Q6IDG2   A0A0M4ED82   A0A182R2F4   A0A2M4BY06   W5JAN6   A0A1B6K7G5   A0A2M4AIA6   A0A2M3ZKZ1   A0A2M4BY78   A0A0P4ZYV2   B4PFK3   B3M673   A0A087UR91   A0A182Q9H6   A0A2L2YLZ9   A0A131XE64   A0A0P4W032  

PDB

6FRK     E-value=1.96863e-45,     Score=457

KEGG

778523    K12272 signal recognition particle receptor subunit beta | (RefSeq) signal recognition particle rece

PATHWAY

03060    Protein export - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0005525   GO:0035293   GO:0008363   GO:0003924   GO:0012505   GO:0005622   GO:0007264   GO:0016491   GO:0016638   GO:0004674   GO:0009058   GO:0016742   GO:0003824  

PANTHER

PTHR11485:SF34  

Length:

250

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.32326

Exp number, first 60 AAs:

21.8914

Total prob of N-in:

0.83937

POSSIBLE N-term signal

sequence

inside

1  -  20

TMhelix

21  -  40

outside

41  -  250

 

 

Pi

228.998003

Theta

173.363383

Tajima's D

1.252166

CLR

13.979575

CSRT

0.726063696815159

Interpretation

Uncertain