Gene

KWMTBOMO04424  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005392

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_proteasome_activator_complex_subunit_3_[Bombyx_mori]

Location

Bomo_Chr8(-):6447209-6452743      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.112

CDS

ATGACAGACGTTGCAAAAAAGGTCCAAGACTACAAAGATTCTTTGAAACTAAAGGCGGAGCATTTGATAATTAAAGGTTTCCCAGAAAAGATAGTGAAATTAAATGAATTACTAGAGACATCAAACTTTCAAAATCGGAATTTATCGGACGTACATCAGGATTTAAACATTCCAATACCAACACCACCTGCGACGTCAAACAATGAGCCAAATGCTAAACGTCAAAGACTGGACTCATCGGAGTTATCCAGCAACTCAACCATAGAAGGAACACGGGTTTATGTACTGCCGAATGGTTCAGTACCCTGCAACAAGCCACTCAGTGATCTTATACATCTTGTTAAGCCACACATTAGGGAACTTGTTGAAGATTCAAACTTACTCAAAATGTGGATTTCATTTATGATTCCGAAAATTGAGGATGGGAACAATTTCGGTGTTTCAATACAAGAGGATACACTGGCAGAGATACAATCAGTAGAATCAGAGGCAGCTGCTTTTTTTGATCAAATCTCACGATATTTCATATCCAGGGCTAAAATAGTATCCAAAGTTGCCAAATACCCCCACATTGATGACTACAGAAGAGCTGTTAGGGAATTGGATGAAAAAGAATATTTGTCACTCTGGTTGGTAATGTGCGAGATCCGCAATCGTTACTGCTCACTCCACGACATTGTCATCAAAAACTTAGAGAAGATTAAAAAACCACGTTCATCGAATGCTGAGTCATTATATTAG

Protein

MTDVAKKVQDYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFFDQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYLSLWLVMCEIRNRYCSLHDIVIKNLEKIKKPRSSNAESLY

Uniprot

A0A2H1WU97   A0A1E1W231   A0A212EHZ3   A0A194RH45   A0A194PWD2   S4PXP4   + More
A0A0L7LJS4   K7J0Y8   A0A232EQP7   V9IM35   A0A088AST4   A0A0N0BC91   A0A310SB15   A0A154PEZ7   F4X2G8   A0A026W7U4   A0A1S4EZB3   A0A195CTL9   A0A023ELB6   E2BDM2   A0A158NFN3   Q1HQZ9   T1DET4   E1ZYI1   A0A3L8DCH7   U5EK08   A0A151IT90   A0A2A3EAR1   B4L206   A0A1Q3F6N4   A0A0L0C898   A0A0T6BCK7   V5GKH4   B0W7R9   A0A067QLS9   A0A182R057   T1DEQ3   T1PGA5   A0A195AY79   A0A0K8TP89   A0A0A1WWL3   A0A1I8M3R6   A0A1Y1LUM1   A0A1I8NR12   A0A182N1I3   A0A0C9Q0L2   A0A1I8NR15   A0A2J7PWK8   A0A1A9ULL9   A0A1A9YQ80   A0A1B0BY21   A0A1B0A096   A0A151WGR0   A0A0K8VNK1   A0A034WH06   A0A2J7PWL0   W8C7Z8   D6X179   R4WE21   A0A1J1I8B3   A0A336L3W4   D3TNU2   A0A182P0U6   A0A1B0GJJ3   B4R4A2   A0A0J7KEP4   B4JLB6   A0A182VV68   A0A084VNX8   A0A182YR81   B4IGP4   A0A1B0GMQ8   A0A0C9QUH0   A0A1A9W9B4   B3NWR1   B4Q227   B4M6N3   A0A182J9X5   A0A0M3QZ69   A0A182M6W0   A0A182RM64   Q9V3P3   A0A1B6GWZ0   A0A182TX72   Q7QF52   A0A182IAN0   A0A182LM31   A0A2M4AEF1   A0A2M4AED6   A0A1W4V7W4   A0A182XBV4   A0A182K957   A0A1B6K7X6   A0A182UQQ5   A0A1L8DST7   A0A1B6KP59   A0A1L8DSQ8   B4NPN0   A0A2M3Z4E1   A0A1L8DT07  

Pubmed

22118469    26354079    23622113    26227816    20075255    28648823    + More
21719571    24508170    24945155    20798317    21347285    17204158    17510324    24330624    30249741    17994087    26108605    24845553    25315136    26369729    25830018    28004739    25348373    24495485    18362917    19820115    23691247    20353571    24438588    25244985    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    12364791    14747013    17210077    20966253   

EMBL

ODYU01011099    SOQ56623.1    GDQN01010004    JAT81050.1    AGBW02014758    OWR41106.1    + More
KQ460397    KPJ15256.1    KQ459589    KPI97686.1    GAIX01004683    JAA87877.1    JTDY01000856    KOB75660.1    NNAY01002753    OXU20626.1    JR051170    AEY61444.1    KQ435936    KOX68314.1    KQ774645    OAD52311.1    KQ434890    KZC10456.1    GL888580    EGI59354.1    KK107348    EZA52162.1    KQ977279    KYN04010.1    GAPW01003596    JAC10002.1    GL447678    EFN86184.1    ADTU01014687    DQ440295    CH477222    ABF18328.1    EAT47264.1    GALA01000922    JAA93930.1    GL435225    EFN73735.1    QOIP01000010    RLU17842.1    GANO01001996    JAB57875.1    KQ981031    KYN10177.1    KZ288312    PBC28382.1    CH933810    EDW07727.2    GFDL01011838    JAV23207.1    JRES01000755    KNC28663.1    LJIG01001878    KRT85062.1    GALX01003902    JAB64564.1    DS231855    EDS38213.1    KK853275    KDR09086.1    AXCN02001384    GALA01000947    JAA93905.1    KA646913    AFP61542.1    KQ976716    KYM76899.1    GDAI01001630    JAI15973.1    GBXI01011251    JAD03041.1    GEZM01051793    JAV74697.1    GBYB01007408    JAG77175.1    NEVH01020889    PNF20712.1    JXJN01022468    KQ983159    KYQ46998.1    GDHF01011853    JAI40461.1    GAKP01004101    JAC54851.1    PNF20711.1    GAMC01003309    JAC03247.1    KQ971372    EFA09524.2    AK418024    BAN21239.1    CVRI01000044    CRK96527.1    UFQS01001739    UFQT01001739    SSX12127.1    SSX31588.1    CCAG010002930    EZ423094    ADD19370.1    AJWK01021848    CM000366    EDX17804.1    LBMM01008642    KMQ88724.1    CH916370    EDW00369.1    ATLV01014941    KE524996    KFB39672.1    CH480836    EDW48994.1    AJVK01012235    GBYB01007409    JAG77176.1    CH954180    EDV47223.1    CM000162    EDX01548.1    KRK06197.1    CH940653    EDW62450.1    CP012528    ALC48859.1    AXCM01001562    AF215730    AE014298    AY069688    AAF19529.1    AAF48241.1    AAL39833.1    AGB95344.1    GECZ01002823    JAS66946.1    AAAB01008846    EAA06362.3    APCN01001282    GGFK01005819    MBW39140.1    GGFK01005818    MBW39139.1    GECU01000146    JAT07561.1    GFDF01004575    JAV09509.1    GEBQ01026739    JAT13238.1    GFDF01004576    JAV09508.1    CH964291    EDW86470.1    GGFM01002612    MBW23363.1    GFDF01004639    JAV09445.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000037510    UP000002358    UP000215335    + More
UP000005203    UP000053105    UP000076502    UP000007755    UP000053097    UP000078542    UP000008237    UP000005205    UP000008820    UP000000311    UP000279307    UP000078492    UP000242457    UP000009192    UP000037069    UP000002320    UP000027135    UP000075886    UP000095301    UP000078540    UP000095300    UP000075884    UP000235965    UP000078200    UP000092443    UP000092460    UP000092445    UP000075809    UP000007266    UP000183832    UP000092444    UP000075885    UP000092461    UP000000304    UP000036403    UP000001070    UP000075920    UP000030765    UP000076408    UP000001292    UP000092462    UP000091820    UP000008711    UP000002282    UP000008792    UP000075880    UP000092553    UP000075883    UP000075900    UP000000803    UP000075902    UP000007062    UP000075840    UP000075882    UP000192221    UP000076407    UP000075881    UP000075903    UP000007798   

PRIDE

Q9V3P3   

Pfam

PF02251   PA28_alpha        + More
PF02252   PA28_beta

Interpro

IPR036997   PA28_C_sf        + More
IPR003185   Proteasome_activ_PA28_N       
IPR036252   Proteasome_activ_sf       
IPR009077   Proteasome_activ_PA28       
IPR036996   PA28_N_sf       
IPR003186   PA28_C       

SUPFAM

SSF47216   SSF47216       

Gene 3D

1.20.120.180     1.20.5.120    

ProteinModelPortal

A0A2H1WU97   A0A1E1W231   A0A212EHZ3   A0A194RH45   A0A194PWD2   S4PXP4   + More
A0A0L7LJS4   K7J0Y8   A0A232EQP7   V9IM35   A0A088AST4   A0A0N0BC91   A0A310SB15   A0A154PEZ7   F4X2G8   A0A026W7U4   A0A1S4EZB3   A0A195CTL9   A0A023ELB6   E2BDM2   A0A158NFN3   Q1HQZ9   T1DET4   E1ZYI1   A0A3L8DCH7   U5EK08   A0A151IT90   A0A2A3EAR1   B4L206   A0A1Q3F6N4   A0A0L0C898   A0A0T6BCK7   V5GKH4   B0W7R9   A0A067QLS9   A0A182R057   T1DEQ3   T1PGA5   A0A195AY79   A0A0K8TP89   A0A0A1WWL3   A0A1I8M3R6   A0A1Y1LUM1   A0A1I8NR12   A0A182N1I3   A0A0C9Q0L2   A0A1I8NR15   A0A2J7PWK8   A0A1A9ULL9   A0A1A9YQ80   A0A1B0BY21   A0A1B0A096   A0A151WGR0   A0A0K8VNK1   A0A034WH06   A0A2J7PWL0   W8C7Z8   D6X179   R4WE21   A0A1J1I8B3   A0A336L3W4   D3TNU2   A0A182P0U6   A0A1B0GJJ3   B4R4A2   A0A0J7KEP4   B4JLB6   A0A182VV68   A0A084VNX8   A0A182YR81   B4IGP4   A0A1B0GMQ8   A0A0C9QUH0   A0A1A9W9B4   B3NWR1   B4Q227   B4M6N3   A0A182J9X5   A0A0M3QZ69   A0A182M6W0   A0A182RM64   Q9V3P3   A0A1B6GWZ0   A0A182TX72   Q7QF52   A0A182IAN0   A0A182LM31   A0A2M4AEF1   A0A2M4AED6   A0A1W4V7W4   A0A182XBV4   A0A182K957   A0A1B6K7X6   A0A182UQQ5   A0A1L8DST7   A0A1B6KP59   A0A1L8DSQ8   B4NPN0   A0A2M3Z4E1   A0A1L8DT07  

PDB

5MX5     E-value=6.37514e-39,     Score=401

KEGG

101742315    K06698 proteasome activator subunit 3 (PA28 gamma) | (RefSeq) proteasome activator complex subunit 3

PATHWAY

03050    Proteasome - Bombyx mori (domestic silkworm)

GO

GO:0008537   GO:0061136   GO:0010950   GO:0005654   GO:0005737   GO:2000045   GO:0061133   GO:0005634   GO:0004866   GO:0005705   GO:0005703   GO:0000398   GO:0071013   GO:0071011   GO:0016021   GO:0008270   GO:0016616   GO:0004930   GO:0007186   GO:0004674   GO:0009058   GO:0016742   GO:0003824  

PANTHER

PTHR10660  

Length:

246

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00069

Exp number, first 60 AAs:

0

Total prob of N-in:

0.21670

outside

1  -  246

 

 

Pi

213.334011

Theta

155.587429

Tajima's D

0.951782

CLR

0.161477

CSRT

0.645067746612669

Interpretation

Uncertain