Silkworm Genome Informatics Database

Gene

KWMTBOMO04416

Pre Gene Modal

BGIBMGA005403

Annotation

PREDICTED:_malate_dehydrogenase?_mitochondrial-like_[Bombyx_mori]

Location

Bomo_Chr8(+):6374854-6379912 View in EpiBrowser

Location in the cell

Extracellular Reliability : 3.716

CDS

ATGGTACCACTTGTAGCCGAAATACAAAGATTGCGTGGCGTGTACAACCCTCGGACGTTGCTCGGCTGTGTGGAACTGAACTGTGTGAGAGCTAACACGGTATTGGCGGACTTCTTGAAAGTACCCCCCGAGGCTGTAAGGGTGCCGGTCATTGGAGGCGCTTCTCCCAATACAATGGTGCCGGTGCTGTCGGCTGCTGTACATCCTTGCACTATGACGCAAGAACAGATAGAGTGCGTAACGTCTTGCATTATGAGCGGAACAGAAGCAGTGTCGTGCGCGAAGGGTTGCAGTACGGAAACCGCGAGTTTGTCGGGTGCCTATGCTGTGGCTCGTAATACTATAAACGTTGTGAAGGGTCTCCAGGGCGCTAAGAACATTGTGCAGTGCGCGTATGTGGACAGCCTCGGTACCTGTGCACCGGATTGTCAATTCTTTGCAAGTGAGGTAATATTAGGATCGTCTGGAGTTGAGAAGAACTTAGGGGTTCCCGAATTGACAAAGTTTGAAAACTGCTTACTGTGCAATTGTTTGCCGTATGTTAGAAATGAAATCGCTCGTGCTGTTTGGCTGGTGTACACGATGTGCCAGGAGTGCTGTTGCTCGACTTGTTACGCGCACCCGTGCACTTGCTTCACCCCGCCGATAGTGCCTTGCGTGCCGCCTTCGAACTGGACATGCGACTGTCCTGACGCGTGCCGCGATGAATATCTAGCTTCGGTTTGCAGAGAAATGACTTGCAAGTGTGGTACTACTGAGTTATGTTGGCGACCGCGCGAGTCTGACTACGACGCGGCGCGGGCCGCCAACTTAACGCATCAAATGCCGCTTAAAGGTTGCGCTTGCTCAGAATGCAGAGTTCCTAGAAGCATAAGAATCGAACAGGAGCTCAGAGAAAAGGCTAGGGATCCGTGCCTGTCTAATTTATGA

Protein

MVPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLADFLKVPPEAVRVPVIGGASPNTMVPVLSAAVHPCTMTQEQIECVTSCIMSGTEAVSCAKGCSTETASLSGAYAVARNTINVVKGLQGAKNIVQCAYVDSLGTCAPDCQFFASEVILGSSGVEKNLGVPELTKFENCLLCNCLPYVRNEIARAVWLVYTMCQECCCSTCYAHPCTCFTPPIVPCVPPSNWTCDCPDACRDEYLASVCREMTCKCGTTELCWRPRESDYDAARAANLTHQMPLKGCACSECRVPRSIRIEQELREKARDPCLSNL

Uniprot

H9J7B1 A0A212EI10 A0A2A4J6S5 A0A2H1W1J4 A0A194PWC6 A0A194RH50 + More

Pubmed

19121390 22118469 26354079

EMBL

BABH01013598 AGBW02014758 OWR41100.1 NWSH01002755 PCG67569.1 ODYU01005767 + More
SOQ46960.1 KQ459589 KPI97681.1 KQ460397 KPJ15261.1

Proteomes

UP000005204 UP000007151 UP000218220 UP000053268 UP000053240

PRIDE

H9J7B1

Pfam

PF02866 Ldh_1_C + More
PF00056 Ldh_1_N

Interpro

IPR022383   Lactate/malate_DH_C        + More
IPR015955   Lactate_DH/Glyco_Ohase_4_C
IPR036291   NAD(P)-bd_dom_sf
IPR001236   Lactate/malate_DH_N

SUPFAM

SSF56327 SSF56327 + More
SSF51735 SSF51735

Gene 3D

3.90.110.10

ProteinModelPortal

H9J7B1 A0A212EI10 A0A2A4J6S5 A0A2H1W1J4 A0A194PWC6 A0A194RH50 + More

PDB

2DFD E-value=3.52734e-28, Score=310

KEGG

101741175 K00026 malate dehydrogenase [EC:1.1.1.37] | (RefSeq) malate dehydrogenase, mitochondrial-like

PATHWAY

00020    Citrate cycle (TCA cycle) - Bombyx mori (domestic silkworm)
00270    Cysteine and methionine metabolism - Bombyx mori (domestic silkworm)
00620    Pyruvate metabolism - Bombyx mori (domestic silkworm)
00630    Glyoxylate and dicarboxylate metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)

GO

GO:0016616 GO:0005975 GO:0003824 GO:0004930 GO:0007186 GO:0016021 GO:0004674 GO:0009058 GO:0016742 GO:0055114

Length:

309

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01106

Exp number, first 60 AAs:

0.00762

Total prob of N-in:

0.01484

outside

1 - 309

Pi

204.223121

Theta

154.787188

Tajima's D

0.989907

CLR

0

CSRT

0.659017049147543

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics